FC878365

Overview
NameFC878365
Unique NameFC878365
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length899
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5925 contig Ccv1_Contig5925:1..898. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878365 vs. ExPASy Swiss-Prot
Match: WDR53_MOUSE (WD repeat-containing protein 53 OS=Mus musculus GN=Wdr53 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.892e-22
Identity = 67/203 (33.00%), Postives = 105/203 (51.72%), Query Frame = 2
Query:   56 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENN-----GNAGQCYNPAFVHAIAI 649
            GH ++  C  A++D  G VAS GE G +  +      +  +   G   VTS+ F +     +Y S G+ +   DV        L+ ++ N+EEIN +  N   S LA ADD G +KI+D+ +  + +SL+  HS+ICSSV F P +P  ++S GLD ++++W   K RP  I N    E          G+  NPA  H++++
Sbjct:    8 GHSSSILCLNANKD--GLVASGGEGGDLVAWGEDGTPLGHMQLEGADDVTSVLFSASCPTKLYASHGETISVLDVRSLKG--SLDHFHVNEEEINCLSLNETESLLASADDSGAIKILDLEKKKVTRSLKR-HSNICSSVAFRPQRPQSLVSCGLDMQVMLWSLQKARPVWITNLQEDETEETEGPQTPGRLLNPALAHSVSV 205          
BLAST of FC878365 vs. ExPASy Swiss-Prot
Match: WDR53_BOVIN (WD repeat-containing protein 53 OS=Bos taurus GN=WDR53 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.189e-22
Identity = 69/207 (33.33%), Postives = 107/207 (51.69%), Query Frame = 2
Query:   56 GHKATATCCIASRDRPGFVASSGEDG-CICWFDLRSKDVQLVTDV---GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENN-----GNAGQCYNPAFVHAIAI 649
            GH +   C  AS++  G VAS  E G  + W     +D  L+      G   VT++ F       +Y S G+ +   DV   +   PL+ ++ N+EEIN +  N   + LA ADD G +KI+D+    + +SL+  HS+ICSSV F P +P  ++S GLD ++++W+  K RP  I N    E        + GQ  NPA  H++++
Sbjct:    8 GHSSPILCLNASQE--GLVASGAEGGDLVVW----GEDGTLLGHTCFQGAEDVTNVLFSPSCPTKLYASHGETISILDVR--SLKEPLDDFHVNEEEINCLSLNETENLLASADDSGTIKILDLENKKISRSLKR-HSNICSSVAFRPQRPQSLVSCGLDMQVMLWNLRKARPLWITNLQEDETEEMESPQSPGQLLNPALAHSVSV 205          
BLAST of FC878365 vs. ExPASy Swiss-Prot
Match: WDR53_HUMAN (WD repeat-containing protein 53 OS=Homo sapiens GN=WDR53 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.732e-21
Identity = 66/203 (32.51%), Postives = 101/203 (49.75%), Query Frame = 2
Query:   56 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENN-----GNAGQCYNPAFVHAIAI 649
            GH +   C  AS++  G +AS  E G +  +      +      G   VTS+ F       +Y S G+ +   DV        L+ ++ N+EEIN +  N   + LA ADD G +KI+D+    + +SL+  HS+ICSSV F P +P  ++S GLD ++++W   K RP  I N    E        + GQ  NPA  H+I++
Sbjct:    8 GHSSPVLCLNASKE--GLLASGAEGGDLTAWGEDGTPLGHTRFQGADDVTSVLFSPSCPTKLYASHGETISVLDVRSLKD--SLDHFHVNEEEINCLSLNQTENLLASADDSGAIKILDLENKKVIRSLKR-HSNICSSVAFRPQRPQSLVSCGLDMQVMLWSLQKARPLWITNLQEDETEEMEGPQSPGQLLNPALAHSISV 205          
BLAST of FC878365 vs. ExPASy Swiss-Prot
Match: WDR53_DICDI (WD repeat-containing protein 53 homolog OS=Dictyostelium discoideum GN=wdr53 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.339e-19
Identity = 72/247 (29.15%), Postives = 118/247 (47.77%), Query Frame = 2
Query:   47 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRS-KDVQLVTDVGNG-PVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP-ASWRPLES-YNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNF---GLPENNGNAGQ----------CYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 736
            +L GHK T  C I+S ++   +AS  +D  +  +DL + K +Q + +   G PV ++CF    +  +Y S    + SFD+  P    +   + Y +N EEINQ+  + K  +LA  DD G  KIID+ ++ L +SL   H++I +   F P    E+I+  +D  ++ WDF K +      F    LP+N   + Q            NP FV ++           +K   ++ GDG + +  I S
Sbjct:   24 KLIGHKDTVLC-ISSHNKKEIIASGSDDCTVRIWDLNTNKSIQSIVEGFQGNPVNNVCFDQ--DFTLYCSYDNIIVSFDLRQPNVILKEFNTQYKFNTEEINQLSFDSKYQYLAACDDSGQTKIIDVTKNKLVESLNKKHTNIATGCVFRPNSKNELITSSMDFSIIHWDFLKAKVLHRDTFKEGSLPQNISKSQQQQQETTEPNRMLNPPFVTSVD------CSNNSKYVAISMGDGTIVINEISS 261          
The following BLAST results are available for this feature:
BLAST of FC878365 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
WDR53_MOUSE1.892e-2233.00WD repeat-containing protein 53 OS=Mus musculus GN... [more]
WDR53_BOVIN7.189e-2233.33WD repeat-containing protein 53 OS=Bos taurus GN=W... [more]
WDR53_HUMAN2.732e-2132.51WD repeat-containing protein 53 OS=Homo sapiens GN... [more]
WDR53_DICDI3.339e-1929.15WD repeat-containing protein 53 homolog OS=Dictyos... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA99CG02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA99CG02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878365 ID=FC878365; Name=FC878365; organism=Citrus clementina; type=EST; length=899bp
CCGACGGGTCGGTACGAGTATGACCGACGCAGAGGCGAAGCCACGACGGT
TGAGAGGTCACAAGGCCACTGCCACGTGTTGCATAGCCTCACGTGACCGC
CCTGGCTTTGTTGCCTCTTCTGGGGAGGATGGTTGCATTTGCTGGTTTGA
TTTGAGAAGCAAAGACGTGCAGCTTGTCACTGATGTTGGAAATGGACCTG
TTACTTCACTTTGTTTCAAGTCAGGGAATGAAGACATTATCTACGTTTCC
TCGGGAAAGGAAGTCAAATCTTTTGATGTGCATATGCCTGCATCGTGGAG
GCCATTAGAGAGCTACAACTATAACAAAGAGGAGATAAATCAGATCGTGT
GCAACCCTAAGTCATCTTTTCTTGCTTGCGCAGATGATGGTGGTGATGTT
AAGATCATTGATATTCGCCAGCATTGCCTTTATAAATCACTGAGAGCTGG
CCATTCAAGTATCTGTAGCAGTGTGCAATTCATACCCTGGAAACCTTGGG
AAGTCATTTCTGGAGGTCTGGATTCAAAGCTTGTCATGTGGGACTTCTCC
AAAGGGCGTCCAAACAAGATTGTGAATTTTGGCTTACCTGAAAACAATGG
TAATGCTGGGCAATGCTATAACCCTGCTTTTGTGCATGCAATAGCAATTC
CAGATGCTGATATGTTAGACAAAACAAACAAAATATGTGTCGTTGCTAAG
GGTGATGGTGTTGTTGATGTGATCAATATTGAATCAGAACTTAATATAAG
TAGGTCAAAAAGTACCACAAAACCGCTGAAGGGCTCTCAATCCACATCAA
AAGTTAATATTCGGGATGCAGAAATGGAAATTCTAAATCAAAGTGGTGGA
AAGAGGCTGCATCTAGATTATTTCTGTTGGTGGCCATACTGCTGCTGCT
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