FC878367

Overview
NameFC878367
Unique NameFC878367
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7984 contig Ccv1_Contig7984:97..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878367 vs. ExPASy Swiss-Prot
Match: DCE_PETHY (Glutamate decarboxylase OS=Petunia hybrida GN=GAD PE=1 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 2.948e-51
Identity = 105/153 (68.63%), Postives = 123/153 (80.39%), Query Frame = 1
Query:    4 ENAMVLKEGLETTGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHELDSLPSKV---LVPASEQNGRNG----KKTEIETQREVTTYWRKFVSERKANNKNKIC 441
            ENA VL+EGLE TGRFNI+SK+ GVPLVAFSLKDN++H+EFE++E LRRFGWIVPAYTMP +AQHITVLRVVIREDFSRTLAERLV DI KVLHELD+LP++V   L  A EQ   NG    KKT+ E Q E+ T W+KFV E+K    N++C
Sbjct:  349 ENASVLREGLEKTGRFNIISKEIGVPLVAFSLKDNRQHNEFEISETLRRFGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVRDIEKVLHELDTLPARVNAKLAVAEEQAAANGSEVHKKTDSEVQLEMITAWKKFVEEKK-KKTNRVC 500          
BLAST of FC878367 vs. ExPASy Swiss-Prot
Match: DCE2_ARATH (Glutamate decarboxylase 2 OS=Arabidopsis thaliana GN=GAD2 PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 8.028e-49
Identity = 103/148 (69.59%), Postives = 117/148 (79.05%), Query Frame = 1
Query:    4 ENAMVLKEGLETTGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHELDSLPSKVLVPASEQNGRNG-------KKTEIETQREVTTYWRKFVSERKANN 426
            EN +VLKEG+E T RFNIVSKD+GVP+VAFSLKD+  H+EFE++E+LRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLV DI+KVLHELD+LPSK+    S++ G  G       KK E E   EV   WRKFV ERK  N
Sbjct:  348 ENMVVLKEGIEKTERFNIVSKDQGVPVVAFSLKDHSFHNEFEISEMLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVADISKVLHELDTLPSKI----SKKMGIEGIAENVKEKKMEKEILMEVIVGWRKFVKERKKMN 491          
BLAST of FC878367 vs. ExPASy Swiss-Prot
Match: DCE1_ARATH (Glutamate decarboxylase 1 OS=Arabidopsis thaliana GN=GAD1 PE=1 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 3.373e-47
Identity = 97/148 (65.54%), Postives = 118/148 (79.73%), Query Frame = 1
Query:    4 ENAMVLKEGLETTGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHELDSLPSKVL------VPASEQNGRN----GKKTEIETQREVTTYWRKFVSERK 417
            EN +VL+EGLE T RFNIVSKDEGVPLVAFSLKD+  H EFE++++LRR+GWIVPAYTMP +AQHITVLRVVIREDFSRTLAERLV+DI KV+ ELD LPS+V+         SE N  N     KK++I+ QR++ T W+KFV++RK
Sbjct:  349 ENMIVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVMRELDELPSRVIHKISLGQEKSESNSDNLMVTVKKSDIDKQRDIITGWKKFVADRK 496          
BLAST of FC878367 vs. ExPASy Swiss-Prot
Match: DCE_SOLLC (Glutamate decarboxylase OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.499e-36
Identity = 81/147 (55.10%), Postives = 101/147 (68.71%), Query Frame = 1
Query:    7 NAMVLKEGLETTGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHELDSLPSK-----VLVPASEQNGRNG------KKTEIETQREVTTYWRKFVSER 414
            NA VL EG+   GRF+IVSKD GVP+VAFSL+D+ ++  FEV+E LRRFGWIVPAYTMP DA+HI VLRVVIREDFS +LAERLV DI K+L ELD+ P +     V V A E     G          +ETQ+++  +WRK   ++
Sbjct:  351 NAKVLTEGITKMGRFDIVSKDVGVPVVAFSLRDSSKYTVFEVSEHLRRFGWIVPAYTMPPDAEHIAVLRVVIREDFSHSLAERLVSDIEKILSELDTQPPRLPTKAVRVTAEEVRDDKGDGLHHFHMDTVETQKDIIKHWRKIAGKK 497          
The following BLAST results are available for this feature:
BLAST of FC878367 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
DCE_PETHY2.948e-5168.63Glutamate decarboxylase OS=Petunia hybrida GN=GAD ... [more]
DCE2_ARATH8.028e-4969.59Glutamate decarboxylase 2 OS=Arabidopsis thaliana ... [more]
DCE1_ARATH3.373e-4765.54Glutamate decarboxylase 1 OS=Arabidopsis thaliana ... [more]
DCE_SOLLC3.499e-3655.10Glutamate decarboxylase OS=Solanum lycopersicum PE... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA91BA12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA91BA12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878367 ID=FC878367; Name=FC878367; organism=Citrus clementina; type=EST; length=620bp
CACGAAAATGCAATGGTGCTGAAAGAAGGACTAGAGACCACCGGCCGCTT
CAACATTGTGTCAAAGGACGAAGGGGTTCCGTTGGTGGCATTTTCTCTCA
AGGACAACAAACGCCACGATGAATTCGAAGTGGCCGAATTGCTGCGCCGT
TTTGGTTGGATTGTGCCAGCGTACACCATGCCCGCTGACGCTCAGCACAT
CACCGTGTTACGTGTCGTCATCAGGGAAGACTTCTCTCGCACACTTGCCG
AGCGCCTTGTGCTTGACATCACAAAAGTGCTTCATGAGCTTGATTCGCTT
CCTTCAAAAGTGCTTGTACCTGCTTCTGAACAGAATGGAAGGAATGGAAA
GAAGACTGAAATTGAGACTCAGAGGGAAGTCACTACTTACTGGAGGAAAT
TCGTCTCCGAAAGGAAAGCTAATAACAAGAATAAAATTTGTTAAGACACA
ACCCCCCCCCCCCCTTTTCATTTTTTGAATTTTAGTATTTTACATTTTAT
TTTTGGTATATGAAACTGCTGGCGTGTAGCATGTTGACGATTTTGATTAT
TTGTATTTTTTCTGAGACCTATTGTTAACTGTTAAGACCATTTACTAAAT
CAAAGTTCATCTATATATTC
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