FC878374

Overview
NameFC878374
Unique NameFC878374
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length609
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10522 contig Ccv1_Contig10522:1..609. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878374 vs. ExPASy Swiss-Prot
Match: MTHR1_MAIZE (Methylenetetrahydrofolate reductase 1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.419e-58
Identity = 105/123 (85.37%), Postives = 113/123 (91.87%), Query Frame = -2
Query:    3 MKVIDKIQEKVASDKVVFSFEFFPPKTEDGVENLFERMDRMVAHNPAFCDITWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQ 371
            MKVI+KI E     +  FSFE+FPPKTE+GVENLFERMDRMVAH P+FCDITWGAGGSTADLTL+IANRMQN +CVETMMHLTCTNMPVEKIDHAL+TIKSNGIQNVLALRGDPPHGQDKFVQ
Sbjct:    1 MKVIEKILEAAGDGRTAFSFEYFPPKTEEGVENLFERMDRMVAHGPSFCDITWGAGGSTADLTLEIANRMQNMVCVETMMHLTCTNMPVEKIDHALETIKSNGIQNVLALRGDPPHGQDKFVQ 123          
BLAST of FC878374 vs. ExPASy Swiss-Prot
Match: MTHR2_ARATH (Methylenetetrahydrofolate reductase 2 OS=Arabidopsis thaliana GN=MTHFR2 PE=1 SV=2)

HSP 1 Score: 224.172 bits (570), Expect = 4.129e-58
Identity = 105/123 (85.37%), Postives = 112/123 (91.06%), Query Frame = -2
Query:    3 MKVIDKIQEKVASDKVVFSFEFFPPKTEDGVENLFERMDRMVAHNPAFCDITWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQ 371
            MKVIDKIQ      K  FSFEFFPPKTEDGV+NLFERMDRMVA+ P FCDITWGAGGSTADLTLDIA+RMQN +CVE+MMHLTCTNMPVEKIDHAL+TI+SNGIQNVLALRGDPPHGQDKFVQ
Sbjct:    1 MKVIDKIQSLADEGKTAFSFEFFPPKTEDGVDNLFERMDRMVAYGPTFCDITWGAGGSTADLTLDIASRMQNVVCVESMMHLTCTNMPVEKIDHALETIRSNGIQNVLALRGDPPHGQDKFVQ 123          
BLAST of FC878374 vs. ExPASy Swiss-Prot
Match: MTHR_ORYSJ (Probable methylenetetrahydrofolate reductase OS=Oryza sativa subsp. japonica GN=Os03g0815200 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 7.042e-58
Identity = 105/123 (85.37%), Postives = 113/123 (91.87%), Query Frame = -2
Query:    3 MKVIDKIQEKVASDKVVFSFEFFPPKTEDGVENLFERMDRMVAHNPAFCDITWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQ 371
            MKVI+KIQE  A  + VFSFE+FPPKTE+G++NLFERMDRMVAH P FCDITWGAGGSTADLTL+IANRMQN +CVETMMHLTCTNMPVEKID AL TIKSNGIQNVLALRGDPPHGQDKFVQ
Sbjct:    1 MKVIEKIQEAAADGRTVFSFEYFPPKTEEGLDNLFERMDRMVAHGPNFCDITWGAGGSTADLTLEIANRMQNMVCVETMMHLTCTNMPVEKIDDALTTIKSNGIQNVLALRGDPPHGQDKFVQ 123          
BLAST of FC878374 vs. ExPASy Swiss-Prot
Match: MTHR1_ARATH (Methylenetetrahydrofolate reductase 1 OS=Arabidopsis thaliana GN=MTHFR1 PE=1 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 7.786e-57
Identity = 101/123 (82.11%), Postives = 112/123 (91.06%), Query Frame = -2
Query:    3 MKVIDKIQEKVASDKVVFSFEFFPPKTEDGVENLFERMDRMVAHNPAFCDITWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQ 371
            MKV+DKI+      +  FSFEFFPPKTEDGVENLFERMDR+V++ P FCDITWGAGGSTADLTL+IA+RMQN ICVETMMHLTCTNMP+EKIDHAL+TI+SNGIQNVLALRGDPPHGQDKFVQ
Sbjct:    1 MKVVDKIKSVTEQGQTAFSFEFFPPKTEDGVENLFERMDRLVSYGPTFCDITWGAGGSTADLTLEIASRMQNVICVETMMHLTCTNMPIEKIDHALETIRSNGIQNVLALRGDPPHGQDKFVQ 123          
BLAST of FC878374 vs. ExPASy Swiss-Prot
Match: MTHR1_SCHPO (Methylenetetrahydrofolate reductase 1 OS=Schizosaccharomyces pombe GN=met9 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.594e-28
Identity = 61/120 (50.83%), Postives = 79/120 (65.83%), Query Frame = -2
Query:   15 MKVIDKIQEKVASDKVVFSFEFFPPKTEDGVENLFERMDRMVAHN-PAFCDITWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQD 371
            MK+ DK+      +KV +S+EFFPPKT  GV+NL+ R+DRM     P F D+TWGAGG++++LT  I N +Q    V+T MHLTCTNM  E ID AL+     G +N+LALRGDP    D
Sbjct:    1 MKISDKLLHPDWKEKVTYSYEFFPPKTSTGVQNLYNRIDRMKTWGRPMFVDVTWGAGGTSSELTPGIVNVIQTDFEVDTCMHLTCTNMSTEMIDAALKRAHETGCRNILALRGDPVKDTD 120          
BLAST of FC878374 vs. ExPASy Swiss-Prot
Match: MTHR2_YEAST (Methylenetetrahydrofolate reductase 2 OS=Saccharomyces cerevisiae GN=MET13 PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.097e-26
Identity = 61/124 (49.19%), Postives = 82/124 (66.13%), Query Frame = -2
Query:    9 MKVIDKI-QEKVASDKVVFSFEFFPPKTEDGVENLFERMDRMV-AHNPAFCDITWGAGGST-ADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKF 371
            MK+ +K+ Q +  S K  +SFE+F PKT  GV+NL++RMDRM  A  P F DITW AGG   + L+ D+    Q+ + +ET MHLTCTNMP+  ID AL+    +G QN+LALRGDPP   + +
Sbjct:    1 MKITEKLEQHRQTSGKPTYSFEYFVPKTTQGVQNLYDRMDRMYEASLPQFIDITWNAGGGRLSHLSTDLVATAQSVLGLETCMHLTCTNMPISMIDDALENAYHSGCQNILALRGDPPRDAENW 124          
BLAST of FC878374 vs. ExPASy Swiss-Prot
Match: MTHR1_YEAST (Methylenetetrahydrofolate reductase 1 OS=Saccharomyces cerevisiae GN=MET12 PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 9.283e-26
Identity = 57/101 (56.44%), Postives = 69/101 (68.32%), Query Frame = -2
Query:   15 SFEFFPPKTEDGVENLFERMDRMVAHNPAFCDITWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQD 317
            S EFFPPKTE G  NL ERM RM A +P F  +TWGAGG+TA+ TL +A+  Q T+ +   MHLTCTN     ID AL    + GI+N+LALRGDPP G+D
Sbjct:   16 SLEFFPPKTELGTRNLMERMHRMTALDPLFITVTWGAGGTTAEKTLTLASLAQQTLNIPVCMHLTCTNTEKAIIDDALDRCYNAGIRNILALRGDPPIGED 116          
BLAST of FC878374 vs. ExPASy Swiss-Prot
Match: MTHR2_SCHPO (Methylenetetrahydrofolate reductase 2 OS=Schizosaccharomyces pombe GN=met11 PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 1.936e-23
Identity = 54/120 (45.00%), Postives = 78/120 (65.00%), Query Frame = -2
Query:   15 MKVIDKIQEKVASDKVVFSFEFFPPKTEDGVENLFERMDRMVAHN-PAFCDITWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQD 371
            MK++D I +K+ +    +SFE+FPPKT  G+ENL  R+ RM  +  P F  +TWG  GSTA++++ +A  ++    +   +HLTCTN+    ID AL+T K  GI+N+LALRGDPP   D
Sbjct:    1 MKIVDLI-DKIPNGNAFYSFEYFPPKTTVGLENLSSRITRMSRNMMPLFSSVTWGTAGSTAEVSIYLAKMLEQHHKIPACLHLTCTNVDKAIIDKALETAKEYGIRNILALRGDPPLNSD 119          
BLAST of FC878374 vs. ExPASy Swiss-Prot
Match: METF_AQUAE (5,10-methylenetetrahydrofolate reductase OS=Aquifex aeolicus GN=metF PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.893e-19
Identity = 51/115 (44.35%), Postives = 70/115 (60.87%), Query Frame = -2
Query:   27 MKVIDKIQEKVASDKVVFSFEFFPPKTEDGVENLFERMDRMVAHNPAFCDITWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPP 371
            MK+ D +++ V S     SFEFFPPKTE+G   LFE + ++   NP F  +T+GAGGST D T +I  ++     +  M HLTC     E++   LQ  K+ GI+N+LALRGD P
Sbjct:    1 MKIGDILRKGVFS----ISFEFFPPKTEEGERQLFETIRKLEKLNPTFVSVTYGAGGSTRDRTRNIVQKIHEETNLTVMAHLTCIAHTREELIDILQDYKNIGIENILALRGDVP 111          
BLAST of FC878374 vs. ExPASy Swiss-Prot
Match: MTHR_MACFA (Methylenetetrahydrofolate reductase OS=Macaca fascicularis GN=MTHFR PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.707e-17
Identity = 45/114 (39.47%), Postives = 65/114 (57.02%), Query Frame = -2
Query:   30 DKIQEKVASDKVVFSFEFFPPKTEDGVENLFERMDRMVAHNPAFCDITWGAGGSTAD----LTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDP 359
            DK++ ++ S    FS EFFPP+T +G  NL  R DRM A  P F D+TW   G         ++ IA+   N   +ET++H+TC    +E+I   L   K  G++N++ALRGDP
Sbjct:   47 DKMRRRMESGDKWFSLEFFPPRTAEGAVNLISRFDRMAAGGPLFIDVTWHPAGDPGSDKETSSMMIASTAVNYCGLETILHMTCCCQRLEEITGHLHKAKQLGLKNIMALRGDP 160          
The following BLAST results are available for this feature:
BLAST of FC878374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
MTHR1_MAIZE1.419e-5885.37Methylenetetrahydrofolate reductase 1 OS=Zea mays ... [more]
MTHR2_ARATH4.129e-5885.37Methylenetetrahydrofolate reductase 2 OS=Arabidops... [more]
MTHR_ORYSJ7.042e-5885.37Probable methylenetetrahydrofolate reductase OS=Or... [more]
MTHR1_ARATH7.786e-5782.11Methylenetetrahydrofolate reductase 1 OS=Arabidops... [more]
MTHR1_SCHPO7.594e-2850.83Methylenetetrahydrofolate reductase 1 OS=Schizosac... [more]
MTHR2_YEAST1.097e-2649.19Methylenetetrahydrofolate reductase 2 OS=Saccharom... [more]
MTHR1_YEAST9.283e-2656.44Methylenetetrahydrofolate reductase 1 OS=Saccharom... [more]
MTHR2_SCHPO1.936e-2345.00Methylenetetrahydrofolate reductase 2 OS=Schizosac... [more]
METF_AQUAE2.893e-1944.355,10-methylenetetrahydrofolate reductase OS=Aquife... [more]
MTHR_MACFA2.707e-1739.47Methylenetetrahydrofolate reductase OS=Macaca fasc... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA53BG05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA53BG05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878374 ID=FC878374; Name=FC878374; organism=Citrus clementina; type=EST; length=609bp
ATCTGAACGAACTTATCCTGACCGTGAGGAGGATCGCCGCGAAGAGCGAG
AACGTTCTGGATGCCGTTGGACTTAATAGTCTGAAGAGCGTGATCGATCT
TCTCGACGGGCATGTTCGTGCACGTCAAATGCATCATCGTCTCGACGCAT
ATCGTGTTCTGCATCCTGTTCGCGATGTCGAGAGTCAGATCGGCCGTGGA
GCCACCCGCCCCCCACGTGATGTCGCAGAATGCCGGGTTGTGGGCCACCA
TGCGGTCCATCCGCTCGAACAAGTTCTCCACGCCATCTTCCGTCTTCGGC
GGGAAGAATTCGAAGGAGAAGACGACCTTGTCGGAGGCTACTTTCTCTTG
AATCTTGTCTATTACCTTCATTTTTGGTTCGGAGAGTAGCTACTGCTGCC
ACCGACAGGTCGTTTACGAGTGAGTTGTCGGTTGAGTTCAGATCTGCGAG
GGTGATTTATGAAAAAGAAAAATGGAAAGAATGGATGCGAGATGAAAGTA
AAAGAGAGTGGGTCTTTGTTTTTCTGCCTTTCGGAAATAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAA
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