FC878377

Overview
NameFC878377
Unique NameFC878377
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length884
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8446 contig Ccv1_Contig8446:29..912. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878377 vs. ExPASy Swiss-Prot
Match: ATL1N_ARATH (RING-H2 finger protein ATL1N OS=Arabidopsis thaliana GN=ATL1N PE=2 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 4.203e-51
Identity = 116/239 (48.54%), Postives = 145/239 (60.67%), Query Frame = 2
Query:  149 DHGVVNFLFLFLYLHA----LPYVTAQTXXXXXDAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSF-IPVLNPDVGSSRLEQGSDNIQEISSTDVQRRDEEAPDVILTNQNRPPRSRSIGW 850
            DHG +  L LFL L +      +V  Q      D  S    +F+ TMAI+ ++LVSVFF LGFFSVYIR+C ER            G     +R+ ARGLD S+I TFPTF YS V+ L+IGK +LEC+VCLNEF D+ETLRLIPKC HVFH  CIDAWL +H TCP+CRA+L+P PGE+  S  IP L  D   S  +   D I+ + S D +  +  A   +  NQ+ P RS S GW
Sbjct:   18 DHGSILQLLLFLLLLSSHGGFKFVAGQATHGGSDV-SGDSSRFDPTMAILMIVLVSVFFFLGFFSVYIRRCLERVMGMDYGNPNDAGNWLATNRQQARGLDASIIETFPTFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWLRSHTTCPLCRADLIPVPGESIVSIQIPGLVNDPPGS--DPNGDRIRSLGSPDARLIESVA---LTCNQSMPRRSMSTGW 250          
BLAST of FC878377 vs. ExPASy Swiss-Prot
Match: ATL1C_ARATH (RING-H2 finger protein ATL1C OS=Arabidopsis thaliana GN=ATL1C PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 3.226e-43
Identity = 100/208 (48.08%), Postives = 129/208 (62.02%), Query Frame = 2
Query:  263 FNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSSRLEQGSDNIQE--ISSTDVQRRDEEAPDVILTNQNRPPRSRSIGWRRPSRWFPRS 880
            F+ T AI+ ++LVSVFF LG  SVY+R+C +      D+       +N R      GLD SVI TFPTF YS V+ L+IGK +LEC VCLNEF D+ETLRLIP+C HVFH  CIDAWL +  TCP+CRANLVP PGE+ SS IP L  + G + L    D+ ++  ++S D +  D  A      NQ+ P +S S GW+    + P S
Sbjct:   35 FSPTTAIIMIVLVSVFFALGCISVYMRRCLQHALGM-DSGGGPGNWLNVRQTTEP-GLDASVIETFPTFPYSTVKTLRIGKEALECPVCLNEFEDDETLRLIPQCCHVFHPGCIDAWLRSQTTCPLCRANLVPVPGESVSSEIPGLARETGQNSLRTPIDDNRKRVLTSPDERLIDSVA---WTGNQSMPRKSMSTGWKLAELYSPAS 237          
BLAST of FC878377 vs. ExPASy Swiss-Prot
Match: ATL3B_ARATH (RING-H2 finger protein ATL3B OS=Arabidopsis thaliana GN=ATL3B PE=1 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 6.726e-41
Identity = 81/143 (56.64%), Postives = 98/143 (68.53%), Query Frame = 2
Query:  260 KFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRS--RRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPS 682
            + +  MA++ VIL++  F +GFFS+Y R C+      PDA  +  GG   R+     ARGLD SV+ TFPTFLYS V+  K+GKG LECA+CLNEF D+ETLRL+PKC HVFH  CIDAWL AH TCPVCRANL  Q  E  S
Sbjct:   44 RLSPAMAVIVVILIAALFFMGFFSIYFRHCS----GVPDAGVSPAGGARSRATVNAAARGLDVSVVETFPTFLYSDVKTQKLGKGELECAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPVCRANLAEQVAEGES 182          
BLAST of FC878377 vs. ExPASy Swiss-Prot
Match: ATL1H_ARATH (RING-H2 finger protein ATL1H OS=Arabidopsis thaliana GN=ATL1H PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 7.436e-40
Identity = 95/217 (43.78%), Postives = 122/217 (56.22%), Query Frame = 2
Query:  281 IVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFA--TIIGGINQRS--RRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSSRLEQGSDNIQEISSTDVQRRDEEAPDVIL---------TNQNRPPRSRSIG---WRRPSRWFPRSH 883
            +  VI+  + F L F  +    C +    SP   +  T  GG  + +  RR +RGL   VIN+FP+FLYS V+ LKIGKG +ECA+CLNEF DEETLRL+P CSH FH  CID WLS+ +TCPVCRA+L P+PG   +S  P + P           +   ++ +   +R   E+PDV L         T  N PPRSRS G   WR     FPRSH
Sbjct:   45 VPAVIIAMLMFTLLFSMLACCVCYKYTNTSPHGTSSDTEEGGHGEVAFTRRTSRGLGKDVINSFPSFLYSQVKGLKIGKGGVECAICLNEFEDEETLRLMPPCSHAFHASCIDVWLSSRSTCPVCRASLPPKPGSDQNSLYPFIRPH---------DNQDMDLENVTARRSVLESPDVRLLDRLSWSNNTGANTPPRSRSTGLSNWRITELLFPRSH 252          
BLAST of FC878377 vs. ExPASy Swiss-Prot
Match: ATL2G_ARATH (RING-H2 finger protein ATL2G OS=Arabidopsis thaliana GN=ATL2G PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.402e-38
Identity = 101/246 (41.06%), Postives = 131/246 (53.25%), Query Frame = 2
Query:  167 FLFLFLYLHALPYVTAQTXXXXXDAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQ--RSRR-GARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV-PQPGETPSSFIPVLNPDVGSSRLEQGSDNIQEISSTDVQRRDEEAPDVILTNQNRPPRSRSIG---WRRPSRWFPRSH 883
            FL L L L ++PY   QT          T  K N  + +V  +L  V F + F S++ R+   +   S    +T     +Q  R RR  ARGLD   I TFPTFLYS V+ ++IGKG +ECAVCL EF D+ETLRL+P C HVFH DC+D WLS H+TCP+CRA+LV  Q G+   S       D G+       +    + S+D    D     V  +N N  PRS+S G   W+     FPRSH
Sbjct:   18 FLLLLLLLQSVPYGFGQTQTTPP---GTTKTKPNDPVVVVITVLFLVIFFMVFGSIFCRRSNAQFSRSSIFRSTDADAESQVVRIRRLTARGLDAEAIETFPTFLYSEVKAVRIGKGGVECAVCLCEFEDDETLRLMPPCCHVFHADCVDVWLSEHSTCPLCRADLVLNQQGDDDDSTESYSGTDPGTISSSTDPERGMVLESSDAHLLDA----VTWSNSNITPRSKSTGLSSWQITGILFPRSH 256          
BLAST of FC878377 vs. ExPASy Swiss-Prot
Match: ATL5H_ARATH (RING-H2 finger protein ATL5H OS=Arabidopsis thaliana GN=ATL5H PE=2 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 5.329e-38
Identity = 78/148 (52.70%), Postives = 97/148 (65.54%), Query Frame = 2
Query:  236 DAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRG--ARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGE 673
            D ++ +G   +  MA+V V++++  F +GFF+VYIR CT     + D   T  GG  +R      ARGLD   I TFPTF+YS V+  KIGKG+LECA+CLNEF D+ETLRL+PKC HVFH  CI AWL  H TCPVCR NL  Q  E
Sbjct:   33 DPYAYSG-SLSPAMAVVVVVVIAALFFMGFFTVYIRHCT----GAVDGSVTPAGGARRRVTNATVARGLDAETIETFPTFVYSEVKTQKIGKGALECAICLNEFEDDETLRLLPKCDHVFHPHCIGAWLQGHVTCPVCRTNLAEQTPE 175          
BLAST of FC878377 vs. ExPASy Swiss-Prot
Match: ATL4C_ARATH (Putative RING-H2 finger protein ATL4C OS=Arabidopsis thaliana GN=ATL4C PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.924e-36
Identity = 102/249 (40.96%), Postives = 131/249 (52.61%), Query Frame = 2
Query:  155 GVVNFLFLFLYLHALPYVTAQTXXXXXDAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQR--SRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSSRLEQGSDNIQEISSTDVQRRDEEAPDVILTNQNRPPRSRSIG----WRRPSRWFPRSH 883
            GV+  LFLF   H LPYVT Q      ++   T    +   +I+ ++++++F  LG  S  +     R           IG   Q     R  RGL+  VI +FPTFLYS V+ LKIGKG +ECA+CL+EF D+ETLR +P CSH FH +CID WLS+ +TCPVCRANL  +PGE+     P LN DV     E G           VQ+   E     LT  +   RSRS G    WR    + PRSH
Sbjct:   15 GVILPLFLF---HLLPYVTCQQESVPTNSIRQTNLSAD---SIIAIVVLAIFISLGMVSCCLHCIFYREE---------IGAAGQDVLHSRARRGLEKEVIESFPTFLYSEVKGLKIGKGGVECAICLSEFEDQETLRWMPPCSHTFHANCIDVWLSSWSTCPVCRANLSLKPGES----YPYLNMDV-----ETGG----------VQKLPNERS---LTGNSVTTRSRSTGLLSSWRMAEIFVPRSH 226          
BLAST of FC878377 vs. ExPASy Swiss-Prot
Match: ATL2F_ARATH (RING-H2 finger protein ATL2F OS=Arabidopsis thaliana GN=ATL2F PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.453e-32
Identity = 80/191 (41.88%), Postives = 109/191 (57.07%), Query Frame = 2
Query:  272 TMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQR-SRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSSRLEQGSDNIQEISSTDVQRRDEEAPDVILTNQNRPPRSRS 841
            T+ ++T+IL ++F I+G  SV  R  + +  +           +  R S    RGLD+++IN+FPTFLYS V+E +IG G +ECAVC+ EF D ETLRL+P+C HVFH DC+  WLS H+TCP+CR +L  QPGE        LNP+               + ST+    D     V  TN+NRP RS S
Sbjct:   14 TLLVITIILFAIF-IVGLASVCFRWTSRQFYSQESINPFTDSDVESRTSITAVRGLDEAIINSFPTFLYSEVKERRIGIGGVECAVCICEFEDHETLRLMPECCHVFHADCVSVWLSDHSTCPLCRVDLCLQPGER-----SYLNPEP------------DLVESTNSHLFD----GVTWTNRNRPSRSWS 182          
BLAST of FC878377 vs. ExPASy Swiss-Prot
Match: ATL4O_ARATH (RING-H2 finger protein ATL4O OS=Arabidopsis thaliana GN=ATL4O PE=2 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 1.271e-31
Identity = 68/135 (50.37%), Postives = 92/135 (68.15%), Query Frame = 2
Query:  284 VTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGI--NQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP---QPGE 673
            V  +LV++FF+ G  SVYIR C    R++PD+          +  SRRG  GLD++V+ +FP F YS+V+E KIG   LECA+CLNE  D ET+RL+P C+H+FH+DCID WL +H TCPVCR+NL     +PG+
Sbjct:   48 VFAVLVTLFFLTGLLSVYIRHCA---RSNPDSSTRYFRNRANDGSSRRG--GLDNAVVESFPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCPVCRSNLTAKSNKPGD 177          
BLAST of FC878377 vs. ExPASy Swiss-Prot
Match: ATL4B_ARATH (Putative RING-H2 finger protein ATL4B OS=Arabidopsis thaliana GN=ATL4B PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.310e-31
Identity = 75/191 (39.27%), Postives = 110/191 (57.59%), Query Frame = 2
Query:  176 LFLYLHALPYVTAQTXXXXXDAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGR---NSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSSRLEQGS 739
            LFL +H LPYVT Q      D    T      T  ++ +I++++F  L   + ++ +   R      S + F +          R  RGL+  ++ +FP FLYS V+ LKIGKG +ECA+CL+EF D+ETLR +P CSH FH +CID WLS+ +TCP CRANL  +PGE  S   P+ + + G+ + ++ S
Sbjct:   20 LFL-VHLLPYVTCQQESESVDRNRKTNFP---TETVIAIIVLAIFISLSMVACFLHKTFYRAEVEAASQEVFHS----------RARRGLEKELVESFPIFLYSEVKGLKIGKGGVECAICLSEFVDKETLRWMPPCSHTFHANCIDVWLSSQSTCPACRANLSLKPGE--SYPYPITDLETGNEQRDEHS 194          
The following BLAST results are available for this feature:
BLAST of FC878377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
ATL1N_ARATH4.203e-5148.54RING-H2 finger protein ATL1N OS=Arabidopsis thalia... [more]
ATL1C_ARATH3.226e-4348.08RING-H2 finger protein ATL1C OS=Arabidopsis thalia... [more]
ATL3B_ARATH6.726e-4156.64RING-H2 finger protein ATL3B OS=Arabidopsis thalia... [more]
ATL1H_ARATH7.436e-4043.78RING-H2 finger protein ATL1H OS=Arabidopsis thalia... [more]
ATL2G_ARATH1.402e-3841.06RING-H2 finger protein ATL2G OS=Arabidopsis thalia... [more]
ATL5H_ARATH5.329e-3852.70RING-H2 finger protein ATL5H OS=Arabidopsis thalia... [more]
ATL4C_ARATH2.924e-3640.96Putative RING-H2 finger protein ATL4C OS=Arabidops... [more]
ATL2F_ARATH7.453e-3241.88RING-H2 finger protein ATL2F OS=Arabidopsis thalia... [more]
ATL4O_ARATH1.271e-3150.37RING-H2 finger protein ATL4O OS=Arabidopsis thalia... [more]
ATL4B_ARATH6.310e-3139.27Putative RING-H2 finger protein ATL4B OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA53BG06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA53BG06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878377 ID=FC878377; Name=FC878377; organism=Citrus clementina; type=EST; length=884bp
CTTTTGCTTTGTCTTAGAAACAAATCTTCAGAGCTCCGAGCAAAAGAACC
ACTCATGATCATGAACAACAACTACAATTACTTTACTTGAAGTGATGACT
GTTCTAACGCCTAATCCGAGCCGTTCAATTTTCAATCCTATGATATGCGA
TCATGGCGTGGTCAACTTTCTTTTTCTCTTTCTCTATCTCCACGCCTTAC
CGTATGTCACCGCACAAACTCCACCGCCGCCACCGGACGCGTTTTCTGTT
ACGGGGCCGAAATTCAACGGTACTATGGCCATAGTAACCGTAATATTGGT
CAGCGTTTTCTTCATCTTGGGCTTCTTCTCCGTTTACATCCGTCAGTGCA
CTGAACGGGGCCGAAACAGCCCTGACGCTTTTGCTACTATAATTGGAGGG
ATCAACCAACGGTCCCGCAGAGGCGCGCGCGGGCTTGACGATTCTGTTAT
CAACACTTTTCCCACCTTCCTCTACTCGGCGGTCAGAGAGCTTAAAATCG
GCAAGGGTTCTTTAGAATGCGCGGTTTGCTTGAACGAGTTTGGAGATGAG
GAAACGCTGCGTTTGATACCAAAGTGTAGCCACGTGTTTCACATGGATTG
CATCGACGCTTGGTTGTCTGCTCATAACACGTGTCCCGTCTGCCGCGCAA
ATTTGGTGCCACAACCTGGCGAAACTCCCTCCAGCTTCATTCCAGTTCTT
AACCCGGATGTTGGCTCGAGTCGATTGGAACAAGGTTCAGATAATATTCA
AGAGATTTCATCGACTGATGTGCAGAGGAGAGATGAAGAAGCTCCTGACG
TGATCCTGACCAATCAGAATAGGCCACCTAGATCGAGATCGATAGGGTGG
AGGAGGCCGTCCCGGTGGTTTCCACGTTCACACT
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