FC878377
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC878377 vs. ExPASy Swiss-Prot
Match: ATL1N_ARATH (RING-H2 finger protein ATL1N OS=Arabidopsis thaliana GN=ATL1N PE=2 SV=2) HSP 1 Score: 201.83 bits (512), Expect = 4.203e-51 Identity = 116/239 (48.54%), Postives = 145/239 (60.67%), Query Frame = 2 Query: 149 DHGVVNFLFLFLYLHA----LPYVTAQTXXXXXDAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSF-IPVLNPDVGSSRLEQGSDNIQEISSTDVQRRDEEAPDVILTNQNRPPRSRSIGW 850 DHG + L LFL L + +V Q D S +F+ TMAI+ ++LVSVFF LGFFSVYIR+C ER G +R+ ARGLD S+I TFPTF YS V+ L+IGK +LEC+VCLNEF D+ETLRLIPKC HVFH CIDAWL +H TCP+CRA+L+P PGE+ S IP L D S + D I+ + S D + + A + NQ+ P RS S GW Sbjct: 18 DHGSILQLLLFLLLLSSHGGFKFVAGQATHGGSDV-SGDSSRFDPTMAILMIVLVSVFFFLGFFSVYIRRCLERVMGMDYGNPNDAGNWLATNRQQARGLDASIIETFPTFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWLRSHTTCPLCRADLIPVPGESIVSIQIPGLVNDPPGS--DPNGDRIRSLGSPDARLIESVA---LTCNQSMPRRSMSTGW 250
BLAST of FC878377 vs. ExPASy Swiss-Prot
Match: ATL1C_ARATH (RING-H2 finger protein ATL1C OS=Arabidopsis thaliana GN=ATL1C PE=1 SV=1) HSP 1 Score: 175.637 bits (444), Expect = 3.226e-43 Identity = 100/208 (48.08%), Postives = 129/208 (62.02%), Query Frame = 2 Query: 263 FNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSSRLEQGSDNIQE--ISSTDVQRRDEEAPDVILTNQNRPPRSRSIGWRRPSRWFPRS 880 F+ T AI+ ++LVSVFF LG SVY+R+C + D+ +N R GLD SVI TFPTF YS V+ L+IGK +LEC VCLNEF D+ETLRLIP+C HVFH CIDAWL + TCP+CRANLVP PGE+ SS IP L + G + L D+ ++ ++S D + D A NQ+ P +S S GW+ + P S Sbjct: 35 FSPTTAIIMIVLVSVFFALGCISVYMRRCLQHALGM-DSGGGPGNWLNVRQTTEP-GLDASVIETFPTFPYSTVKTLRIGKEALECPVCLNEFEDDETLRLIPQCCHVFHPGCIDAWLRSQTTCPLCRANLVPVPGESVSSEIPGLARETGQNSLRTPIDDNRKRVLTSPDERLIDSVA---WTGNQSMPRKSMSTGWKLAELYSPAS 237
BLAST of FC878377 vs. ExPASy Swiss-Prot
Match: ATL3B_ARATH (RING-H2 finger protein ATL3B OS=Arabidopsis thaliana GN=ATL3B PE=1 SV=2) HSP 1 Score: 167.933 bits (424), Expect = 6.726e-41 Identity = 81/143 (56.64%), Postives = 98/143 (68.53%), Query Frame = 2 Query: 260 KFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRS--RRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPS 682 + + MA++ VIL++ F +GFFS+Y R C+ PDA + GG R+ ARGLD SV+ TFPTFLYS V+ K+GKG LECA+CLNEF D+ETLRL+PKC HVFH CIDAWL AH TCPVCRANL Q E S Sbjct: 44 RLSPAMAVIVVILIAALFFMGFFSIYFRHCS----GVPDAGVSPAGGARSRATVNAAARGLDVSVVETFPTFLYSDVKTQKLGKGELECAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPVCRANLAEQVAEGES 182
BLAST of FC878377 vs. ExPASy Swiss-Prot
Match: ATL1H_ARATH (RING-H2 finger protein ATL1H OS=Arabidopsis thaliana GN=ATL1H PE=2 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 7.436e-40 Identity = 95/217 (43.78%), Postives = 122/217 (56.22%), Query Frame = 2 Query: 281 IVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFA--TIIGGINQRS--RRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSSRLEQGSDNIQEISSTDVQRRDEEAPDVIL---------TNQNRPPRSRSIG---WRRPSRWFPRSH 883 + VI+ + F L F + C + SP + T GG + + RR +RGL VIN+FP+FLYS V+ LKIGKG +ECA+CLNEF DEETLRL+P CSH FH CID WLS+ +TCPVCRA+L P+PG +S P + P + ++ + +R E+PDV L T N PPRSRS G WR FPRSH Sbjct: 45 VPAVIIAMLMFTLLFSMLACCVCYKYTNTSPHGTSSDTEEGGHGEVAFTRRTSRGLGKDVINSFPSFLYSQVKGLKIGKGGVECAICLNEFEDEETLRLMPPCSHAFHASCIDVWLSSRSTCPVCRASLPPKPGSDQNSLYPFIRPH---------DNQDMDLENVTARRSVLESPDVRLLDRLSWSNNTGANTPPRSRSTGLSNWRITELLFPRSH 252
BLAST of FC878377 vs. ExPASy Swiss-Prot
Match: ATL2G_ARATH (RING-H2 finger protein ATL2G OS=Arabidopsis thaliana GN=ATL2G PE=2 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 1.402e-38 Identity = 101/246 (41.06%), Postives = 131/246 (53.25%), Query Frame = 2 Query: 167 FLFLFLYLHALPYVTAQTXXXXXDAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQ--RSRR-GARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV-PQPGETPSSFIPVLNPDVGSSRLEQGSDNIQEISSTDVQRRDEEAPDVILTNQNRPPRSRSIG---WRRPSRWFPRSH 883 FL L L L ++PY QT T K N + +V +L V F + F S++ R+ + S +T +Q R RR ARGLD I TFPTFLYS V+ ++IGKG +ECAVCL EF D+ETLRL+P C HVFH DC+D WLS H+TCP+CRA+LV Q G+ S D G+ + + S+D D V +N N PRS+S G W+ FPRSH Sbjct: 18 FLLLLLLLQSVPYGFGQTQTTPP---GTTKTKPNDPVVVVITVLFLVIFFMVFGSIFCRRSNAQFSRSSIFRSTDADAESQVVRIRRLTARGLDAEAIETFPTFLYSEVKAVRIGKGGVECAVCLCEFEDDETLRLMPPCCHVFHADCVDVWLSEHSTCPLCRADLVLNQQGDDDDSTESYSGTDPGTISSSTDPERGMVLESSDAHLLDA----VTWSNSNITPRSKSTGLSSWQITGILFPRSH 256
BLAST of FC878377 vs. ExPASy Swiss-Prot
Match: ATL5H_ARATH (RING-H2 finger protein ATL5H OS=Arabidopsis thaliana GN=ATL5H PE=2 SV=2) HSP 1 Score: 158.303 bits (399), Expect = 5.329e-38 Identity = 78/148 (52.70%), Postives = 97/148 (65.54%), Query Frame = 2 Query: 236 DAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRG--ARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGE 673 D ++ +G + MA+V V++++ F +GFF+VYIR CT + D T GG +R ARGLD I TFPTF+YS V+ KIGKG+LECA+CLNEF D+ETLRL+PKC HVFH CI AWL H TCPVCR NL Q E Sbjct: 33 DPYAYSG-SLSPAMAVVVVVVIAALFFMGFFTVYIRHCT----GAVDGSVTPAGGARRRVTNATVARGLDAETIETFPTFVYSEVKTQKIGKGALECAICLNEFEDDETLRLLPKCDHVFHPHCIGAWLQGHVTCPVCRTNLAEQTPE 175
BLAST of FC878377 vs. ExPASy Swiss-Prot
Match: ATL4C_ARATH (Putative RING-H2 finger protein ATL4C OS=Arabidopsis thaliana GN=ATL4C PE=3 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 2.924e-36 Identity = 102/249 (40.96%), Postives = 131/249 (52.61%), Query Frame = 2 Query: 155 GVVNFLFLFLYLHALPYVTAQTXXXXXDAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQR--SRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSSRLEQGSDNIQEISSTDVQRRDEEAPDVILTNQNRPPRSRSIG----WRRPSRWFPRSH 883 GV+ LFLF H LPYVT Q ++ T + +I+ ++++++F LG S + R IG Q R RGL+ VI +FPTFLYS V+ LKIGKG +ECA+CL+EF D+ETLR +P CSH FH +CID WLS+ +TCPVCRANL +PGE+ P LN DV E G VQ+ E LT + RSRS G WR + PRSH Sbjct: 15 GVILPLFLF---HLLPYVTCQQESVPTNSIRQTNLSAD---SIIAIVVLAIFISLGMVSCCLHCIFYREE---------IGAAGQDVLHSRARRGLEKEVIESFPTFLYSEVKGLKIGKGGVECAICLSEFEDQETLRWMPPCSHTFHANCIDVWLSSWSTCPVCRANLSLKPGES----YPYLNMDV-----ETGG----------VQKLPNERS---LTGNSVTTRSRSTGLLSSWRMAEIFVPRSH 226
BLAST of FC878377 vs. ExPASy Swiss-Prot
Match: ATL2F_ARATH (RING-H2 finger protein ATL2F OS=Arabidopsis thaliana GN=ATL2F PE=2 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 7.453e-32 Identity = 80/191 (41.88%), Postives = 109/191 (57.07%), Query Frame = 2 Query: 272 TMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQR-SRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSSRLEQGSDNIQEISSTDVQRRDEEAPDVILTNQNRPPRSRS 841 T+ ++T+IL ++F I+G SV R + + + + R S RGLD+++IN+FPTFLYS V+E +IG G +ECAVC+ EF D ETLRL+P+C HVFH DC+ WLS H+TCP+CR +L QPGE LNP+ + ST+ D V TN+NRP RS S Sbjct: 14 TLLVITIILFAIF-IVGLASVCFRWTSRQFYSQESINPFTDSDVESRTSITAVRGLDEAIINSFPTFLYSEVKERRIGIGGVECAVCICEFEDHETLRLMPECCHVFHADCVSVWLSDHSTCPLCRVDLCLQPGER-----SYLNPEP------------DLVESTNSHLFD----GVTWTNRNRPSRSWS 182
BLAST of FC878377 vs. ExPASy Swiss-Prot
Match: ATL4O_ARATH (RING-H2 finger protein ATL4O OS=Arabidopsis thaliana GN=ATL4O PE=2 SV=2) HSP 1 Score: 137.117 bits (344), Expect = 1.271e-31 Identity = 68/135 (50.37%), Postives = 92/135 (68.15%), Query Frame = 2 Query: 284 VTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGI--NQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP---QPGE 673 V +LV++FF+ G SVYIR C R++PD+ + SRRG GLD++V+ +FP F YS+V+E KIG LECA+CLNE D ET+RL+P C+H+FH+DCID WL +H TCPVCR+NL +PG+ Sbjct: 48 VFAVLVTLFFLTGLLSVYIRHCA---RSNPDSSTRYFRNRANDGSSRRG--GLDNAVVESFPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCPVCRSNLTAKSNKPGD 177
BLAST of FC878377 vs. ExPASy Swiss-Prot
Match: ATL4B_ARATH (Putative RING-H2 finger protein ATL4B OS=Arabidopsis thaliana GN=ATL4B PE=2 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 6.310e-31 Identity = 75/191 (39.27%), Postives = 110/191 (57.59%), Query Frame = 2 Query: 176 LFLYLHALPYVTAQTXXXXXDAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGR---NSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSSRLEQGS 739 LFL +H LPYVT Q D T T ++ +I++++F L + ++ + R S + F + R RGL+ ++ +FP FLYS V+ LKIGKG +ECA+CL+EF D+ETLR +P CSH FH +CID WLS+ +TCP CRANL +PGE S P+ + + G+ + ++ S Sbjct: 20 LFL-VHLLPYVTCQQESESVDRNRKTNFP---TETVIAIIVLAIFISLSMVACFLHKTFYRAEVEAASQEVFHS----------RARRGLEKELVESFPIFLYSEVKGLKIGKGGVECAICLSEFVDKETLRWMPPCSHTFHANCIDVWLSSQSTCPACRANLSLKPGE--SYPYPITDLETGNEQRDEHS 194 The following BLAST results are available for this feature:
BLAST of FC878377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 79
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878377 ID=FC878377; Name=FC878377; organism=Citrus clementina; type=EST; length=884bpback to top |