FC878380
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC878380 vs. ExPASy Swiss-Prot
Match: MYBG_DICDI (Myb-like protein G OS=Dictyostelium discoideum GN=mybG PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 4.748e-27 Identity = 39/50 (78.00%), Postives = 44/50 (88.00%), Query Frame = 2 Query: 188 SKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQ 337 S K RKPYTI+K RE+WT+ EH KFLEAL LFDRDWKKIE+F+GSKTVIQ Sbjct: 28 SLKSRKPYTISKQRENWTDEEHQKFLEALTLFDRDWKKIESFVGSKTVIQ 77 HSP 2 Score: 56.6102 bits (135), Expect = 4.748e-27 Identity = 44/187 (23.53%), Postives = 75/187 (40.11%), Query Frame = 3 Query: 366 IRSHAQKYFLKVQKNGTAEHLXXXXXXXXXXXXXXQKASKNAPMLXXXXXXXXXXXXXLEPGHFLRPDSSSMLMIPMASAATSWTN------NVQTVSLSPASKGPEVANNRSNSTDSTPKARVSGELTDQGGELTDQGNNSHPLRVLPDFAQVYTFIGSVFDSNASDHVQKLKKMDPIDVETVLLL 908 IRSHAQKYF+KVQKN T E + QK + G F+ PDS S +S+ +W N+ ++P+ ++ + + GG + +N+ + P+F ++Y F+ ++F+SN + + L + ID ET+ +L Sbjct: 78 IRSHAQKYFIKVQKNNTGERIPPPRPKRKSIQPYPQKQKHDG------------------MGAFI-PDSLSGNHFISSSSFATWMTYRGLMPNISESQINPSDLQKQLEQLQQAQQYIQQAVTTAQSSQRNGGLPPNPSSNNGGTTLTPNFPKIYAFLSNLFESNGTSFTEALSDLSMIDRETMQIL 245
BLAST of FC878380 vs. ExPASy Swiss-Prot
Match: LHY_ARATH (Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 3.729e-14 Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 2 Query: 179 EDPSKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQ 337 E+ K RKPYTITK RE WTE EH++FLEAL+L+ R W++IE IG+KT +Q Sbjct: 8 EELLAKARKPYTITKQRERWTEDEHERFLEALRLYGRAWQRIEEHIGTKTAVQ 60 HSP 2 Score: 26.5646 bits (57), Expect = 3.729e-14 Identity = 13/43 (30.23%), Postives = 18/43 (41.86%), Query Frame = 3 Query: 366 IRSHAQKYFLKVQKNGTAEHLXXXXXXXXXXXXXXQKASKNAP 494 IRSHAQK+F K++K + + K N P Sbjct: 61 IRSHAQKFFTKLEKEAEVKGIPVCQALDIEIPPPRPKRKPNTP 103
BLAST of FC878380 vs. ExPASy Swiss-Prot
Match: CCA1_ARATH (Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 3.734e-14 Identity = 31/53 (58.49%), Postives = 40/53 (75.47%), Query Frame = 2 Query: 179 EDPSKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQ 337 ED K RKPYTITK RE WTE EH++F+EAL+L+ R W+KIE + +KT +Q Sbjct: 8 EDLVIKTRKPYTITKQRERWTEEEHNRFIEALRLYGRAWQKIEEHVATKTAVQ 60 HSP 2 Score: 28.4906 bits (62), Expect = 3.734e-14 Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = 3 Query: 366 IRSHAQKYFLKVQKNGTAE 422 IRSHAQK+F KV+K A+ Sbjct: 61 IRSHAQKFFSKVEKEAEAK 79 The following BLAST results are available for this feature:
BLAST of FC878380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 3
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878380 ID=FC878380; Name=FC878380; organism=Citrus clementina; type=EST; length=908bpback to top |