FC878380

Overview
NameFC878380
Unique NameFC878380
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length908
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5565 contig Ccv1_Contig5565:1..908. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878380 vs. ExPASy Swiss-Prot
Match: MYBG_DICDI (Myb-like protein G OS=Dictyostelium discoideum GN=mybG PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 4.748e-27
Identity = 39/50 (78.00%), Postives = 44/50 (88.00%), Query Frame = 2
Query:  188 SKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQ 337
            S K RKPYTI+K RE+WT+ EH KFLEAL LFDRDWKKIE+F+GSKTVIQ
Sbjct:   28 SLKSRKPYTISKQRENWTDEEHQKFLEALTLFDRDWKKIESFVGSKTVIQ 77          

HSP 2 Score: 56.6102 bits (135), Expect = 4.748e-27
Identity = 44/187 (23.53%), Postives = 75/187 (40.11%), Query Frame = 3
Query:  366 IRSHAQKYFLKVQKNGTAEHLXXXXXXXXXXXXXXQKASKNAPMLXXXXXXXXXXXXXLEPGHFLRPDSSSMLMIPMASAATSWTN------NVQTVSLSPASKGPEVANNRSNSTDSTPKARVSGELTDQGGELTDQGNNSHPLRVLPDFAQVYTFIGSVFDSNASDHVQKLKKMDPIDVETVLLL 908
            IRSHAQKYF+KVQKN T E +              QK   +                    G F+ PDS S      +S+  +W        N+    ++P+    ++   +            +      GG   +  +N+    + P+F ++Y F+ ++F+SN +   + L  +  ID ET+ +L
Sbjct:   78 IRSHAQKYFIKVQKNNTGERIPPPRPKRKSIQPYPQKQKHDG------------------MGAFI-PDSLSGNHFISSSSFATWMTYRGLMPNISESQINPSDLQKQLEQLQQAQQYIQQAVTTAQSSQRNGGLPPNPSSNNGGTTLTPNFPKIYAFLSNLFESNGTSFTEALSDLSMIDRETMQIL 245          
BLAST of FC878380 vs. ExPASy Swiss-Prot
Match: LHY_ARATH (Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 3.729e-14
Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 2
Query:  179 EDPSKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQ 337
            E+   K RKPYTITK RE WTE EH++FLEAL+L+ R W++IE  IG+KT +Q
Sbjct:    8 EELLAKARKPYTITKQRERWTEDEHERFLEALRLYGRAWQRIEEHIGTKTAVQ 60          

HSP 2 Score: 26.5646 bits (57), Expect = 3.729e-14
Identity = 13/43 (30.23%), Postives = 18/43 (41.86%), Query Frame = 3
Query:  366 IRSHAQKYFLKVQKNGTAEHLXXXXXXXXXXXXXXQKASKNAP 494
            IRSHAQK+F K++K    + +               K   N P
Sbjct:   61 IRSHAQKFFTKLEKEAEVKGIPVCQALDIEIPPPRPKRKPNTP 103          
BLAST of FC878380 vs. ExPASy Swiss-Prot
Match: CCA1_ARATH (Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.734e-14
Identity = 31/53 (58.49%), Postives = 40/53 (75.47%), Query Frame = 2
Query:  179 EDPSKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQ 337
            ED   K RKPYTITK RE WTE EH++F+EAL+L+ R W+KIE  + +KT +Q
Sbjct:    8 EDLVIKTRKPYTITKQRERWTEEEHNRFIEALRLYGRAWQKIEEHVATKTAVQ 60          

HSP 2 Score: 28.4906 bits (62), Expect = 3.734e-14
Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = 3
Query:  366 IRSHAQKYFLKVQKNGTAE 422
            IRSHAQK+F KV+K   A+
Sbjct:   61 IRSHAQKFFSKVEKEAEAK 79          
The following BLAST results are available for this feature:
BLAST of FC878380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
MYBG_DICDI4.748e-2778.00Myb-like protein G OS=Dictyostelium discoideum GN=... [more]
LHY_ARATH3.729e-1460.38Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV... [more]
CCA1_ARATH3.734e-1458.49Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 ... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA53BG07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA53BG07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878380 ID=FC878380; Name=FC878380; organism=Citrus clementina; type=EST; length=908bp
AAAAACTAAAACCTCCAAACAAAAAGATTTGATGGTATCAAAAATCCCGA
ACCCGGCAGAAGGATTCTACTTGGATCCTAATGGCATGGCCTTACCTGGA
CTCGGACCTTTCGCCTCGTCAGCTACAACGCCAACGGCAGCAGCTGCTGC
CGCCGGGACGTCAACGGTGTCCACGTCGGAGGATCCGAGTAAGAAGATCC
GGAAACCGTATACAATCACCAAGTCTAGAGAGAGCTGGACCGAACCCGAG
CACGACAAGTTCCTTGAAGCTCTTCAGCTATTTGACCGTGACTGGAAGAA
GATTGAAGCATTTATTGGGTCAAAGACGGTTATTCAGTCAATTCCTGAGT
GCCGACTGATTTGATATTCGCAGTCATGCACAGAAGTACTTTCTAAAGGT
GCAGAAGAATGGAACAGCTGAACATTTACCTCCGCCCAGGCCTAAAAGGA
AAGCTGCTCATCCTTATCCTCAAAAGGCCTCGAAAAATGCTCCAATGCTC
TCACAAGTGTCTGGTTCCTTCCAATCATCATCTGCTCAACTAGAACCTGG
ACATTTTCTGAGGCCTGATTCTTCATCAATGCTTATGATTCCTATGGCTA
GTGCTGCAACTTCCTGGACAAACAATGTTCAAACAGTCAGCTTATCACCT
GCGTCAAAAGGACCAGAAGTGGCAAACAATCGTAGCAATAGTACCGATAG
TACTCCAAAAGCACGAGTATCAGGGGAATTGACTGATCAAGGAGGGGAAT
TGACTGATCAAGGGAATAATAGCCATCCATTAAGAGTTCTGCCTGACTTT
GCTCAAGTGTACACCTTCATCGGCAGTGTCTTTGACTCCAATGCTTCTGA
TCATGTGCAGAAACTTAAAAAGATGGATCCTATAGATGTTGAAACAGTTC
TGTTGTTG
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