FC878385

Overview
NameFC878385
Unique NameFC878385
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length831
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15212 contig Ccv1_Contig15212:121..951. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878385 vs. ExPASy Swiss-Prot
Match: PARK7_MESAU (Protein DJ-1 OS=Mesocricetus auratus GN=PARK7 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.337e-30
Identity = 76/186 (40.86%), Postives = 114/186 (61.29%), Query Frame = 2
Query:   83 KKVLVPVANGSEPIEALITIDVLRRSGADVAVASVETQLRVDACHGVKVVADALVSDCR-DAVFDLIALPGGMPGATNLKESEVLESIVKKQASDGRLYAAICASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTSRGPGTTMEFVVALVEQLYGKEKADEVSGPLVMR 634
            K+ LV +A G+E +E +I +D++RR+G  V VA +  +  V     V +  D  + D +    +D++ LPGG  GA NL ES V++ I+K+Q S   L AAICA P  AL +  +  G K T +P   +++      +  ESRV++DG ++TSRGPGT+ EF +A+VE L GKE AD+V  PLV++
Sbjct:    4 KRALVILAKGAEEMETVIPVDIMRRAGIKVTVAGLAGKDPVQCSRDVMICPDTSLEDAKKQGPYDVVVLPGGNLGAQNLSESPVVKEILKEQESRKGLIAAICAGPT-ALLAHEIGFGSKVTTHPGAKDKMMNGSHYSYSESRVEKDGLILTSRGPGTSFEFALAIVEALSGKEAADQVKAPLVLK 188          
BLAST of FC878385 vs. ExPASy Swiss-Prot
Match: PARK7_CHICK (Protein DJ-1 OS=Gallus gallus GN=PARK7 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.844e-29
Identity = 79/188 (42.02%), Postives = 115/188 (61.17%), Query Frame = 2
Query:   83 KKVLVPVANGSEPIEALITIDVLRRSGADVAVASVETQLRVDACHGVKVVADALVSDCR-DAVFDLIALPGGMPGATNLKESEVLESIVKKQASDGRLYAAICASPAVALGSWGLLKGLKATCYPSFMEQL---APACAATVESRVQQDGKVVTSRGPGTTMEFVVALVEQLYGKEKADEVSGPLVMR 634
            K+ LV +A G+E +E +I  DV+RR+G  V VA +  +  V     V +  DA + D R +  +D+I LPGG  GA NL ES  ++ I+K Q S   L AAICA P  AL + G+  G K   +P   +++   A  C +  ESRV++DG ++TSRGPGT+ EF +A+VE L GKE A++V  PL+++
Sbjct:    4 KRALVILAKGAEEMETVIPTDVMRRAGIKVTVAGLTGKEPVQCSRDVLICPDASLEDARKEGPYDVIVLPGGNLGAQNLSESAAVKDILKDQESRKGLIAAICAGPT-ALLAHGIGFGSKVITHPLAKDKMMNGAHYCYS--ESRVEKDGNILTSRGPGTSFEFGLAIVEALMGKEVAEQVKAPLILK 188          
BLAST of FC878385 vs. ExPASy Swiss-Prot
Match: PARK7_MOUSE (Protein DJ-1 OS=Mus musculus GN=Park7 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.195e-28
Identity = 74/186 (39.78%), Postives = 114/186 (61.29%), Query Frame = 2
Query:   83 KKVLVPVANGSEPIEALITIDVLRRSGADVAVASVETQLRVDACHGVKVVADALVSDCR-DAVFDLIALPGGMPGATNLKESEVLESIVKKQASDGRLYAAICASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTSRGPGTTMEFVVALVEQLYGKEKADEVSGPLVMR 634
            K+ LV +A G+E +E +I +DV+RR+G  V VA +  +  V     V +  D  + D +    +D++ LPGG  GA NL ES +++ I+K+Q S   L AAICA P  AL +  +  G K T +P   +++      +  ESRV++DG ++TSRGPGT+ EF +A+VE L GK+ A++V  PLV++
Sbjct:    4 KRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVMICPDTSLEDAKTQGPYDVVVLPGGNLGAQNLSESPMVKEILKEQESRKGLIAAICAGPT-ALLAHEVGFGCKVTTHPLAKDKMMNGSHYSYSESRVEKDGLILTSRGPGTSFEFALAIVEALVGKDMANQVKAPLVLK 188          
BLAST of FC878385 vs. ExPASy Swiss-Prot
Match: PARK7_HUMAN (Protein DJ-1 OS=Homo sapiens GN=PARK7 PE=1 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 2.038e-28
Identity = 75/186 (40.32%), Postives = 114/186 (61.29%), Query Frame = 2
Query:   83 KKVLVPVANGSEPIEALITIDVLRRSGADVAVASVETQLRVDACHGVKVVADALVSDCR-DAVFDLIALPGGMPGATNLKESEVLESIVKKQASDGRLYAAICASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTSRGPGTTMEFVVALVEQLYGKEKADEVSGPLVMR 634
            K+ LV +A G+E +E +I +DV+RR+G  V VA +  +  V     V +  DA + D + +  +D++ LPGG  GA NL ES  ++ I+K+Q +   L AAICA P  AL +  +  G K T +P   +++      T  E+RV++DG ++TSRGPGT+ EF +A+VE L GKE A +V  PLV++
Sbjct:    4 KRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPT-ALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 188          
BLAST of FC878385 vs. ExPASy Swiss-Prot
Match: PARK7_BOVIN (Protein DJ-1 OS=Bos taurus GN=PARK7 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.038e-28
Identity = 74/186 (39.78%), Postives = 113/186 (60.75%), Query Frame = 2
Query:   83 KKVLVPVANGSEPIEALITIDVLRRSGADVAVASVETQLRVDACHGVKVVADALVSDCR-DAVFDLIALPGGMPGATNLKESEVLESIVKKQASDGRLYAAICASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTSRGPGTTMEFVVALVEQLYGKEKADEVSGPLVMR 634
            K+ LV +A G+E +E +I +DV+RR+G  V VA +  +  V     V +  DA + D + +  +D++ LPGG  GA NL ES  ++ I+K+Q     L AAICA P  AL +  +  G K T +P   +++      +  E+RV++DG ++TSRGPGT+ EF + +VE L GKE AD+V  PLV++
Sbjct:    4 KRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQEKRKGLIAAICAGPT-ALLAHEIGFGSKVTTHPLAKDKMMNGSHYSYSENRVEKDGLILTSRGPGTSFEFALKIVEVLVGKEVADQVKAPLVLK 188          
BLAST of FC878385 vs. ExPASy Swiss-Prot
Match: PARK7_DANRE (Protein DJ-1 OS=Danio rerio GN=park7 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.662e-28
Identity = 72/186 (38.71%), Postives = 111/186 (59.68%), Query Frame = 2
Query:   83 KKVLVPVANGSEPIEALITIDVLRRSGADVAVASVETQLRVDACHGVKVVADALVSDC-RDAVFDLIALPGGMPGATNLKESEVLESIVKKQASDGRLYAAICASPAVALGSWGLLKGLKATCYPSFMEQL-APACAATVESRVQQDGKVVTSRGPGTTMEFVVALVEQLYGKEKADEVSGPLVMR 634
            K+ LV +A G+E +E +I +DV+RR+G  V VA +  +  V     V +  D+ + D  +   +D++ LPGG+ GA NL ES  ++ ++K Q     L AAICA P  AL + G+  G   T +P   +++ A       E+RVQ+DG V+TSRGPGT+ EF + +VE+L G E A +V  PL+++
Sbjct:    4 KRALVILAKGAEEMETVIPVDVMRRAGIAVTVAGLAGKEPVQCSREVMICPDSSLEDAHKQGPYDVVLLPGGLLGAQNLSESPAVKEVLKDQEGRKGLIAAICAGPT-ALLAHGIAYGSTVTTHPGAKDKMMAGDHYKYSEARVQKDGNVITSRGPGTSFEFALTIVEELMGAEVAAQVKAPLILK 188          
BLAST of FC878385 vs. ExPASy Swiss-Prot
Match: PARK7_CERAE (Protein DJ-1 OS=Cercopithecus aethiops GN=PARK7 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.662e-28
Identity = 74/186 (39.78%), Postives = 114/186 (61.29%), Query Frame = 2
Query:   83 KKVLVPVANGSEPIEALITIDVLRRSGADVAVASVETQLRVDACHGVKVVADALVSDCR-DAVFDLIALPGGMPGATNLKESEVLESIVKKQASDGRLYAAICASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTSRGPGTTMEFVVALVEQLYGKEKADEVSGPLVMR 634
            K+ LV +A G+E +E +I +DV+RR+G  V +A +  +  V     V +  DA + D + +  +D++ LPGG  GA NL ES  ++ I+K+Q +   L AAICA P  AL +  +  G K T +P   +++      T  E+RV++DG ++TSRGPGT+ EF +A+VE L GKE A +V  PLV++
Sbjct:    4 KRALVILAKGAEEMETVIPVDVMRRAGIKVTIAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPT-ALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 188          
BLAST of FC878385 vs. ExPASy Swiss-Prot
Match: PARK7_RAT (Protein DJ-1 OS=Rattus norvegicus GN=Park7 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.726e-27
Identity = 71/186 (38.17%), Postives = 114/186 (61.29%), Query Frame = 2
Query:   83 KKVLVPVANGSEPIEALITIDVLRRSGADVAVASVETQLRVDACHGVKVVADALVSDCR-DAVFDLIALPGGMPGATNLKESEVLESIVKKQASDGRLYAAICASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTSRGPGTTMEFVVALVEQLYGKEKADEVSGPLVMR 634
            K+ LV +A G+E +E +I +D++RR+G  V VA +  +  V     V +  D  + + +    +D++ LPGG  GA NL ES +++ I+K+Q +   L AAICA P  AL +  +  G K T +P   +++      +  ESRV++DG ++TSRGPGT+ EF +A+VE L GK+ A++V  PLV++
Sbjct:    4 KRALVILAKGAEEMETVIPVDIMRRAGIKVTVAGLAGKDPVQCSRDVVICPDTSLEEAKTQGPYDVVVLPGGNLGAQNLSESALVKEILKEQENRKGLIAAICAGPT-ALLAHEVGFGCKVTSHPLAKDKMMNGSHYSYSESRVEKDGLILTSRGPGTSFEFALAIVEALSGKDMANQVKAPLVLK 188          
BLAST of FC878385 vs. ExPASy Swiss-Prot
Match: THIJ_ECOLI (Protein thiJ OS=Escherichia coli (strain K12) GN=thiJ PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 2.109e-25
Identity = 74/186 (39.78%), Postives = 111/186 (59.68%), Query Frame = 2
Query:   92 LVPVANGSEPIEALITIDVLRRSGADVAVASVETQ--LRVDACHGVKVVADALVSDCRDAVFDLIALPGGMPGATNLKESEVLESIVKKQASDGRLYAAICASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDG--KVVTSRGPGTTMEFVVALVEQLYGKEKADEVSGPLVMRA 637
            LV +A GSE  EA+ TID+L R G  V  ASV +   L +    GVK++ADA + +  D  +D+I LPGG+ GA   ++S +L   VK+    GR+ AAICA+PA  L    +      T +P+  +++ PA    ++ RV  D   K++TS+GPGT ++F + +++ L G+EKA EV+  LVM A
Sbjct:    6 LVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDKI-PA-EQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEVASQLVMAA 189          
BLAST of FC878385 vs. ExPASy Swiss-Prot
Match: THIJ_SALTY (Protein thiJ OS=Salmonella typhimurium GN=thiJ PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 3.046e-24
Identity = 73/188 (38.83%), Postives = 111/188 (59.04%), Query Frame = 2
Query:   86 KVLVPVANGSEPIEALITIDVLRRSGADVAVASVETQ--LRVDACHGVKVVADALVSDCRDAVFDLIALPGGMPGATNLKESEVLESIVKKQASDGRLYAAICASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDG--KVVTSRGPGTTMEFVVALVEQLYGKEKADEVSGPLVMRA 637
            + LV +A GSE  EA+ TID+L R G  V  ASV +   L +    GVK++ADA + +  D  +D+I LPGG+ GA   ++S +L   VK+    GR+ AAICA+ A  L    +      T +P+  +++ PA    ++ RV  D   K++TS+GPGT ++F + +++ L G+EKA EV+  LVM A
Sbjct:    4 QALVCLAPGSEETEAVTTIDLLVRGGIHVTTASVASDGNLTIVCSRGVKLLADAPLVEVADGDYDIIVLPGGIKGAECFRDSPLLVETVKQFHRSGRIVAAICAAAATVLVPHDIFPIGNMTGFPALKDKI-PA-EQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLAGREKAHEVASQLVMAA 189          
The following BLAST results are available for this feature:
BLAST of FC878385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
PARK7_MESAU6.337e-3040.86Protein DJ-1 OS=Mesocricetus auratus GN=PARK7 PE=1... [more]
PARK7_CHICK1.844e-2942.02Protein DJ-1 OS=Gallus gallus GN=PARK7 PE=2 SV=1[more]
PARK7_MOUSE1.195e-2839.78Protein DJ-1 OS=Mus musculus GN=Park7 PE=1 SV=1[more]
PARK7_HUMAN2.038e-2840.32Protein DJ-1 OS=Homo sapiens GN=PARK7 PE=1 SV=2[more]
PARK7_BOVIN2.038e-2839.78Protein DJ-1 OS=Bos taurus GN=PARK7 PE=2 SV=1[more]
PARK7_DANRE2.662e-2838.71Protein DJ-1 OS=Danio rerio GN=park7 PE=2 SV=1[more]
PARK7_CERAE2.662e-2839.78Protein DJ-1 OS=Cercopithecus aethiops GN=PARK7 PE... [more]
PARK7_RAT1.726e-2738.17Protein DJ-1 OS=Rattus norvegicus GN=Park7 PE=1 SV... [more]
THIJ_ECOLI2.109e-2539.78Protein thiJ OS=Escherichia coli (strain K12) GN=t... [more]
THIJ_SALTY3.046e-2438.83Protein thiJ OS=Salmonella typhimurium GN=thiJ PE=... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA65DC10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA65DC10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878385 ID=FC878385; Name=FC878385; organism=Citrus clementina; type=EST; length=831bp
ACATTTTCTCCCCAAACAAATTCCTGCTTTGAAAAATCGCATTTTCTCCT
TCACAGCAACAGCTACAATGTCTTCAACTTCCAAAAAGGTTTTGGTGCCT
GTTGCGAACGGGAGTGAGCCGATTGAGGCTTTGATAACGATCGATGTTTT
GAGAAGGTCTGGAGCAGACGTCGCGGTTGCGTCTGTGGAGACACAGCTTC
GTGTCGACGCGTGTCATGGTGTCAAGGTTGTCGCTGATGCTCTGGTGTCT
GACTGCCGCGACGCCGTTTTTGATCTTATAGCTCTTCCCGGTGGCATGCC
CGGTGCTACCAATCTGAAAGAATCTGAAGTATTAGAAAGCATTGTGAAGA
AGCAGGCTTCAGATGGGCGTCTTTATGCTGCTATCTGTGCTTCACCTGCT
GTGGCGTTAGGGTCTTGGGGTCTGTTGAAGGGATTGAAGGCTACTTGTTA
TCCATCATTTATGGAGCAATTAGCTCCTGCTTGTGCAGCAACTGTTGAAT
CAAGAGTACAGCAGGATGGTAAAGTTGTTACGAGTCGTGGACCGGGCACT
ACCATGGAGTTTGTCGTTGCACTTGTTGAGCAGTTGTATGGGAAAGAGAA
AGCTGATGAAGTTTCTGGGCCACTGGTAATGCGTGCAAATCATGGAGATG
AATACACTATTGCTGAGTTCAATCCAATTCAGTGGACATTTGACAATTCT
CCCCAGATTCTTGTGCCTATTGCGAATGGTTCAGAGGAGATGGAAGCTGT
TATGATAATTGATATTCTGCGACGAGCTAAAGCAAACGTTGTGGTTGCAT
CGGTTGAGGATAAACTAGAAATTCTGGCTTC
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