FC878386

Overview
NameFC878386
Unique NameFC878386
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length960
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878386_ssr184 microsatellite FC878386_ssr184:184..198. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig3396 contig Ccv1_Contig3396:80..1040. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC878386 vs. ExPASy Swiss-Prot
Match: GACA_DICDI (Rho GTPase-activating protein gacA OS=Dictyostelium discoideum GN=gacA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.320e-20
Identity = 53/141 (37.59%), Postives = 83/141 (58.87%), Query Frame = 2 
Query:  479 VFGVSTESMQLSFDSRGNSVPTILLLMQRHLYGQGGLQAEGIFRINGENSQEEYVRDQLNRGVIPDGIDIHCLAGLIKAWFRELPAGVLDPLSPEQVMQCQTEEDCLQLVRLLPPTESALLDWAINLMADV-----VNKST 886
            VFGV   +++   +  G  VP IL LM+R L   GGLQ EGIFR+ GE ++ + +++ +NR       DI+ +A LIK W+RELP  +L+ +  E++      ++C+Q  + LP  + +LLDW ++L+  V     VNK T
Sbjct:  143 VFGVDPNTLE-HVEDEGFRVPYILALMKRSLIDNGGLQQEGIFRLAGEQTEIKRLKEAMNRNDFTSSTDINTVASLIKIWYRELPTPILNSIPTEKIFYSTDIDECVQSAKNLPEPQKSLLDWLMHLLLMVSSFSDVNKMT 282
The following BLAST results are available for this feature:
BLAST of FC878386 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
GACA_DICDI3.320e-2037.59Rho GTPase-activating protein gacA OS=Dictyosteliu... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA99CG09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA99CG09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878386 ID=FC878386; Name=FC878386; organism=Citrus clementina; type=EST; length=960bp
ATCATCAGCTTTTAGAGCCATGACCGAAGTCCTCCATTTCCCTTCTTCTC
CAACCACTACCACCACCCCCTCCCCTTCTCCTTCTCCATCCACATCCTCT
TCTCCTTCTTCCTTATCCTGCGCGCCCCCTTCCTGCTTATCCTGCGCGCC
CAGCTCCATTCTTCTCCCCAATGGCGACCCCGTCGACGACGACGACGACG
CCGAGGGTGGTTCTAGTAATAATTCGGTAGCGTTTTCGCGAGAGAGGGAG
GCCGAGGGGGATCAGTTGTCTTTGTTGACTCTGCTCATCGCCATTTTCAG
AAAATCTTTGGTTGCTTGCAAGAGCGATACGAGGGACCTCTGTGCCATGG
AGATCAGCTGGCCTACCAACGTCCGCCACGTGGCTCACGTCACTTTCGAC
AGGTTCAATGGTTTCTTGGGCTTGCCTGTTGAGTTCGAGCCTGAGGTCCC
CCGTCGAGCTCCCAGTGCTAGTGCAACTGTTTTCGGAGTTTCCACAGAAT
CTATGCAGTTGTCATTTGACTCTAGAGGAAATAGTGTGCCAACGATATTA
CTGCTAATGCAAAGGCACTTGTATGGTCAAGGAGGCTTGCAGGCAGAAGG
GATTTTCAGGATAAATGGGGAAAATAGTCAAGAGGAGTATGTCAGAGACC
AATTAAACAGAGGAGTGATACCGGACGGCATTGATATACACTGTTTAGCA
GGACTTATCAAGGCTTGGTTCAGAGAACTCCCAGCCGGGGTTCTGGATCC
ATTATCACCTGAGCAGGTAATGCAATGCCAGACAGAAGAGGATTGTCTTC
AACTTGTGCGGCTTCTACCCCCAACAGAATCTGCTCTGTTAGATTGGGCC
ATCAATCTGATGGCTGATGTTGTCAACAAGAGCACCTAAACAAGATGAAT
GCACGCAATGTTGCAATGGTTTTTGCCCAAATATGACTCAGATGGCAGAC
CCTTTGACTG
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