FC878392

Overview
NameFC878392
Unique NameFC878392
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length908
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878392 vs. ExPASy Swiss-Prot
Match: ABTB1_RAT (Ankyrin repeat and BTB/POZ domain-containing protein 1 OS=Rattus norvegicus GN=Abtb1 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.599e-19
Identity = 46/85 (54.12%), Postives = 59/85 (69.41%), Query Frame = 1
Query:  286 DVFEASRAGDVDRLRYLLES-GVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVRKLLKAYE 537
            D+F + R GDV R+RYLLE   V VN RD+WDS  LYYACL GH +  R LL +GA C  +TFDG+RC Y AL+  +R+ L+ Y+
Sbjct:    5 DLFASCRKGDVGRVRYLLEQRDVEVNVRDKWDSTPLYYACLCGHEELVRYLLANGARCEANTFDGERCLYGALSDPIRRALRDYK 89          
BLAST of FC878392 vs. ExPASy Swiss-Prot
Match: ABTB1_MOUSE (Ankyrin repeat and BTB/POZ domain-containing protein 1 OS=Mus musculus GN=Abtb1 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.599e-19
Identity = 46/85 (54.12%), Postives = 59/85 (69.41%), Query Frame = 1
Query:  286 DVFEASRAGDVDRLRYLLES-GVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVRKLLKAYE 537
            D+F + R GDV R+RYLLE   V VN RD+WDS  LYYACL GH +  R LL +GA C  +TFDG+RC Y AL+  +R+ L+ Y+
Sbjct:    5 DLFASCRKGDVGRVRYLLEQRDVEVNVRDKWDSTPLYYACLCGHEELVRYLLANGARCEANTFDGERCLYGALSDPIRRALRDYK 89          
BLAST of FC878392 vs. ExPASy Swiss-Prot
Match: ABTB1_HUMAN (Ankyrin repeat and BTB/POZ domain-containing protein 1 OS=Homo sapiens GN=ABTB1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.684e-18
Identity = 45/85 (52.94%), Postives = 58/85 (68.24%), Query Frame = 1
Query:  286 DVFEASRAGDVDRLRYLLES-GVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVRKLLKAYE 537
            D+F + R GDV R+RYLLE   V VN RD+WDS  LYYACL GH +    LL +GA C  +TFDG+RC Y AL+  +R+ L+ Y+
Sbjct:    5 DLFASCRKGDVGRVRYLLEQRDVEVNVRDKWDSTPLYYACLCGHEELVLYLLANGARCEANTFDGERCLYGALSDPIRRALRDYK 89          
BLAST of FC878392 vs. ExPASy Swiss-Prot
Match: YIA1_YEAST (Ankyrin repeat-containing protein YIL001W OS=Saccharomyces cerevisiae GN=YIL001W PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.443e-11
Identity = 31/78 (39.74%), Postives = 49/78 (62.82%), Query Frame = 1
Query:  304 RAGDVDRLRYLLESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVRKLLKAYE 537
            R GD+D +  L+ +GVNVN+ D++D+  L+ A L GH    ++LL+ GA+C    ++G RC Y AL   +R  L +Y+
Sbjct:   18 RTGDMDNVDRLISTGVNVNSVDKFDNSPLFLASLCGHEAVVKLLLQRGAVCDRDRYEGARCIYGALTDTIRDTLLSYD 95          
BLAST of FC878392 vs. ExPASy Swiss-Prot
Match: BTB3_SCHPO (BTB/POZ domain-containing protein 3 OS=Schizosaccharomyces pombe GN=btb3 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.443e-11
Identity = 34/85 (40.00%), Postives = 53/85 (62.35%), Query Frame = 1
Query:  286 DVFEASRAGDVDRLRYLLES-GVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVRKLLKAYE 537
            ++ EA R GD++ ++ L+E+    +N  DQ+D   L  A L GH    + LLE+GA+C   TF G+RC Y ALN  +R++L +Y+
Sbjct:   55 ELCEACRRGDLEVVKSLVENYNTPINQVDQFDYSPLVLASLCGHEPVVKFLLENGALCERDTFQGERCLYGALNDNIRRMLLSYD 139          
The following BLAST results are available for this feature:
BLAST of FC878392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ABTB1_RAT2.599e-1954.12Ankyrin repeat and BTB/POZ domain-containing prote... [more]
ABTB1_MOUSE2.599e-1954.12Ankyrin repeat and BTB/POZ domain-containing prote... [more]
ABTB1_HUMAN1.684e-1852.94Ankyrin repeat and BTB/POZ domain-containing prote... [more]
YIA1_YEAST4.443e-1139.74Ankyrin repeat-containing protein YIL001W OS=Sacch... [more]
BTB3_SCHPO4.443e-1140.00BTB/POZ domain-containing protein 3 OS=Schizosacch... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA15CB02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA15CB02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878392 ID=FC878392; Name=FC878392; organism=Citrus clementina; type=EST; length=908bp
AAATTATCACTCTCTGCCTCTCTCCTCTGTGTTCCTGATCTTCCTAATCC
ACACACAATTTTCACAAAACCCCGAAACACCAGGAATTGCAAATGCCCCT
TCTCTTAAACCCTTATTTACTAAACCCCACCCAATCATGAACAAAACTAA
ACACCCGCTAAACTTCAAATTATTACCAAAATGCCGTCAAACCGTCAATC
AACTATCGACGCGGAGCTTGACGAGATCGACCTCGACGCCTCCGACTTCA
GCTCATCCGTACCGCTGAAGAAAGTCCCCAACGGCGACGTATTCGAGGCG
TCACGTGCCGGTGACGTCGACCGGCTTAGGTACCTTCTTGAATCCGGAGT
CAACGTCAACGCGCGTGACCAGTGGGACTCCGTGGCGCTCTACTACGCCT
GCCTCGCCGGACACCTTGATGCCGCCAGGATGTTACTGGAGAGCGGCGCG
ATTTGTTCCGAGCACACTTTCGATGGCGACAGGTGTCACTACGCCGCGCT
TAATTTGAAGGTGAGGAAGCTTTTGAAGGCGTATGAAGCTAGGCCGCCGC
CGTTAGGACCGTTGCAGGCGGCGTTGAGAGACACCTTCTTAGGCTGTGGA
GCTAATCGGCAGTTTCTTGAGGAGGCTGAGGTCGTTTTGGGGATTTCAGT
GGATGACATGGAGGATCTTGTGAAAATTTGCAAGGTGTGCAAGTGTGAAT
CTTTGCAGAGGATTATTGAGAAAGAATTGATTCATCAAAAATATGCAGAG
TATAAGGCACTGAGAGATGTAGACAACTCTCAAAAACGGTTCATCTTACA
AGGCTCAGCACTACCTGAAGAGGACCGGCTTCCTGCTGCCTTGTCTCGGA
TCCTTTCAATTTCCTTAGCAAGGTCAACATGGATCACAATATTGATAATG
GCATTTGT
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