FC878395

Overview
NameFC878395
Unique NameFC878395
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length830
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878395_ssr112 microsatellite FC878395_ssr112:112..126. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11731 contig Ccv1_Contig11731:77..906. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878395 vs. ExPASy Swiss-Prot
Match: WIPI3_XENTR (WD repeat domain phosphoinositide-interacting protein 3 OS=Xenopus tropicalis GN=wdr45l PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.408e-37
Identity = 78/156 (50.00%), Postives = 104/156 (66.67%), Query Frame = 3
Query:  285 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFV-DLKLLHQIETLANPRGLCCLSHHSSTSVLACPGLQRGQVRI 749
            L+   +NQD+GCFA G   GFR+YN +P KE  +++   GG   VEMLFRCN LALVG G   +YPP KV+IWDD + + + E  F ++V++VKL RDRIVVVL+  I V++F  +   LH  ET  NP+GLC L  +S+ S+LA PG   G V+I
Sbjct:   13 LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVGYVEMLFRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQLHVFETCYNPKGLCVLCPNSNNSLLAFPGAHTGHVQI 168          
BLAST of FC878395 vs. ExPASy Swiss-Prot
Match: WIPI3_CHICK (WD repeat domain phosphoinositide-interacting protein 3 OS=Gallus gallus GN=WDR45L PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.408e-37
Identity = 78/156 (50.00%), Postives = 104/156 (66.67%), Query Frame = 3
Query:  285 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFV-DLKLLHQIETLANPRGLCCLSHHSSTSVLACPGLQRGQVRI 749
            L+   +NQD+GCFA G   GFR+YN +P KE  +++   GG   VEMLFRCN LALVG G   +YPP KV+IWDD + + + E  F ++V++VKL RDRIVVVL+  I V++F  +   LH  ET  NP+GLC L  +S+ S+LA PG   G V+I
Sbjct:   13 LLYAGFNQDHGCFACGMENGFRVYNADPLKEKEKQEFPEGGVGHVEMLFRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQLHVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQI 168          
BLAST of FC878395 vs. ExPASy Swiss-Prot
Match: WIPI3_XENLA (WD repeat domain phosphoinositide-interacting protein 3 OS=Xenopus laevis GN=wdr45l PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.839e-37
Identity = 78/156 (50.00%), Postives = 104/156 (66.67%), Query Frame = 3
Query:  285 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFV-DLKLLHQIETLANPRGLCCLSHHSSTSVLACPGLQRGQVRI 749
            L+   +NQD+GCFA G   GFR+YN +P KE  +++   GG   VEMLFRCN LALVG G   +YPP KV+IWDD + + + E  F ++V++VKL RDRIVVVL+  I V++F  +   LH  ET  NP+GLC L  +S+ S+LA PG   G V+I
Sbjct:   13 LLYSGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVSYVEMLFRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQLHVFETCYNPKGLCVLCPNSNNSLLAFPGAHTGHVQI 168          
BLAST of FC878395 vs. ExPASy Swiss-Prot
Match: WIPI3_PONAB (WD repeat domain phosphoinositide-interacting protein 3 OS=Pongo abelii GN=WDR45L PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.098e-37
Identity = 77/156 (49.36%), Postives = 104/156 (66.67%), Query Frame = 3
Query:  285 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFV-DLKLLHQIETLANPRGLCCLSHHSSTSVLACPGLQRGQVRI 749
            L+   +NQD+GCFA G   GFR+YN +P KE  +++   GG   VEMLFRCN LALVG G   +YPP KV+IWDD + + + E  F ++V++VKL RDRIVVVL+  I V++F  +   LH  ET  NP+GLC L  +S+ S+LA PG   G V++
Sbjct:   13 LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVGHVEMLFRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQLHVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQL 168          
BLAST of FC878395 vs. ExPASy Swiss-Prot
Match: WIPI3_MOUSE (WD repeat domain phosphoinositide-interacting protein 3 OS=Mus musculus GN=Wdr45l PE=2 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 4.098e-37
Identity = 77/156 (49.36%), Postives = 104/156 (66.67%), Query Frame = 3
Query:  285 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFV-DLKLLHQIETLANPRGLCCLSHHSSTSVLACPGLQRGQVRI 749
            L+   +NQD+GCFA G   GFR+YN +P KE  +++   GG   VEMLFRCN LALVG G   +YPP KV+IWDD + + + E  F ++V++VKL RDRIVVVL+  I V++F  +   LH  ET  NP+GLC L  +S+ S+LA PG   G V++
Sbjct:   13 LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVGHVEMLFRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQLHVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQL 168          
BLAST of FC878395 vs. ExPASy Swiss-Prot
Match: WIPI3_HUMAN (WD repeat domain phosphoinositide-interacting protein 3 OS=Homo sapiens GN=WDR45L PE=2 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 4.098e-37
Identity = 77/156 (49.36%), Postives = 104/156 (66.67%), Query Frame = 3
Query:  285 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFV-DLKLLHQIETLANPRGLCCLSHHSSTSVLACPGLQRGQVRI 749
            L+   +NQD+GCFA G   GFR+YN +P KE  +++   GG   VEMLFRCN LALVG G   +YPP KV+IWDD + + + E  F ++V++VKL RDRIVVVL+  I V++F  +   LH  ET  NP+GLC L  +S+ S+LA PG   G V++
Sbjct:   13 LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVGHVEMLFRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQLHVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQL 168          
BLAST of FC878395 vs. ExPASy Swiss-Prot
Match: WIPI3_DANRE (WD repeat domain phosphoinositide-interacting protein 3 OS=Danio rerio GN=wdr45l PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.352e-37
Identity = 84/181 (46.41%), Postives = 111/181 (61.33%), Query Frame = 3
Query:  285 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFV-DLKLLHQIETLANPRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKL---INAHDSHIACFT 815
            L+   +NQD+GCFA G   GFR+YN +P KE  + +   GG   VEMLFRCN LALVG G   +YPP KV+IWDD + + + E  F ++V++VKL RDRIVVVL+  I V++F  +   LH  ET  NP+GLC L  +S+ S+LA P    G V+I     N  K    I AH+  + C T
Sbjct:   13 LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKHEFLEGGVGHVEMLFRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQLHVFETCYNPKGLCVLCPNSNNSLLAFPATHSGHVQIVDLA-NTEKPPVDIPAHEGVLCCIT 192          
BLAST of FC878395 vs. ExPASy Swiss-Prot
Match: ATG18_CANGA (Autophagy-related protein 18 OS=Candida glabrata GN=ATG18 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.492e-26
Identity = 63/148 (42.57%), Postives = 93/148 (62.84%), Query Frame = 3
Query:  279 IELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANPRGLCCLSHHSSTSVLACP 722
            + +  +++NQ   C + GTS GF I+NC PF + +  D  SGG+ IVEMLF  ++LALVG GD     P ++ I +  +   I E  F + + SVK++R RIVVVL+ +IY+Y   +++LLH IE   NP GL  LS ++ T++LA P
Sbjct:    6 VSIYYLNFNQTGTCISMGTSNGFLIFNCAPFGKFYSED--SGGYGIVEMLFSTSLLALVGIGDQPMLSPRRLRIINTKKHSIICEVTFPTKILSVKMNRSRIVVVLKEQIYIYDINNMRLLHTIEIAPNPEGLVALSCNTDTNLLAYP 151          
BLAST of FC878395 vs. ExPASy Swiss-Prot
Match: ATG18_YEAST (Autophagy-related protein 18 OS=Saccharomyces cerevisiae GN=ATG18 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.250e-26
Identity = 61/143 (42.66%), Postives = 90/143 (62.94%), Query Frame = 3
Query:  294 VSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANPRGLCCLSHHSSTSVLACP 722
            +++NQ   C + GTS GF+I+NCEPF + +  D  SGG+ IVEMLF  ++LALVG GD     P ++ I +  +   I E  F + + SVK+++ R+VV+L+ +IY+Y    ++LLH IET  NPRGL  +S   + S L  P
Sbjct:   11 INFNQTGTCISLGTSKGFKIFNCEPFGKFYSED--SGGYAIVEMLFSTSLLALVGIGDQPALSPRRLRIINTKKHSIICEVTFPTSILSVKMNKSRLVVLLQEQIYIYDINTMRLLHTIETNPNPRGLMAMSPSVANSYLVYP 151          
BLAST of FC878395 vs. ExPASy Swiss-Prot
Match: ATG18_YEAS7 (Autophagy-related protein 18 OS=Saccharomyces cerevisiae (strain YJM789) GN=ATG18 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.250e-26
Identity = 61/143 (42.66%), Postives = 90/143 (62.94%), Query Frame = 3
Query:  294 VSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANPRGLCCLSHHSSTSVLACP 722
            +++NQ   C + GTS GF+I+NCEPF + +  D  SGG+ IVEMLF  ++LALVG GD     P ++ I +  +   I E  F + + SVK+++ R+VV+L+ +IY+Y    ++LLH IET  NPRGL  +S   + S L  P
Sbjct:   11 INFNQTGTCISLGTSKGFKIFNCEPFGKFYSED--SGGYAIVEMLFSTSLLALVGIGDQPALSPRRLRIINTKKHSIICEVTFPTSILSVKMNKSRLVVLLQEQIYIYDINTMRLLHTIETNPNPRGLMAMSPSVANSYLVYP 151          
The following BLAST results are available for this feature:
BLAST of FC878395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
WIPI3_XENTR1.408e-3750.00WD repeat domain phosphoinositide-interacting prot... [more]
WIPI3_CHICK1.408e-3750.00WD repeat domain phosphoinositide-interacting prot... [more]
WIPI3_XENLA1.839e-3750.00WD repeat domain phosphoinositide-interacting prot... [more]
WIPI3_PONAB4.098e-3749.36WD repeat domain phosphoinositide-interacting prot... [more]
WIPI3_MOUSE4.098e-3749.36WD repeat domain phosphoinositide-interacting prot... [more]
WIPI3_HUMAN4.098e-3749.36WD repeat domain phosphoinositide-interacting prot... [more]
WIPI3_DANRE5.352e-3746.41WD repeat domain phosphoinositide-interacting prot... [more]
ATG18_CANGA2.492e-2642.57Autophagy-related protein 18 OS=Candida glabrata G... [more]
ATG18_YEAST4.250e-2642.66Autophagy-related protein 18 OS=Saccharomyces cere... [more]
ATG18_YEAS74.250e-2642.66Autophagy-related protein 18 OS=Saccharomyces cere... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA60DB02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA60DB02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878395 ID=FC878395; Name=FC878395; organism=Citrus clementina; type=EST; length=830bp
AAAGCGAAAGAGAAAATTTGATCTGATGATCATTAATTTGATTTCTCATA
TCACAGCATCAAGGGGGTGCCACTGAAATTATTCACAATCGAGAAGATTT
TCATCTTTGATTGCTGCTGCTGCTGCTGACCGTTTCTTCGTCCCACATGA
CTTCAACTGTTTCGACATCTCGAGAAATTCTTCCACCGGGCCCCTTTGGA
TCCCCCAATGCTGGCGCTTCGGCTTCGGCTTCGGCTTCATTTGGCCACCC
GCAAACGGCGTTCAGTGATGTTGATGAAATTGAGTTGATCTCTGTGTCTT
GGAACCAGGACTATGGTTGTTTTGCCGCTGGAACTAGTTGTGGGTTTCGA
ATTTATAATTGTGAGCCGTTTAAGGAAACTTTTAGACGTGATTTGAAAAG
TGGTGGGTTTAGGATTGTTGAGATGTTGTTTCGTTGTAATATATTGGCAC
TCGTTGGTGCTGGGGATAATTCTCAGTATCCTCCTACTAAAGTTATTATT
TGGGATGATCATCAGAGCAGGTGCATTGGTGAGTTTGCGTTTAGGTCTGA
TGTTCGCTCTGTGAAATTGAGTAGGGATCGAATTGTGGTTGTTCTTGAGC
ATAAGATATATGTTTATAGTTTTGTTGATCTCAAGTTGCTTCATCAGATT
GAGACTCTTGCGAATCCGAGGGGGCTTTGTTGTCTTTCTCATCATTCGAG
TACTTCTGTGTTGGCTTGCCCGGGTCTCCAACGTGGACAGGTTCGCATTG
AGCACTTTGGGCTCAATATGATAAAGCTAATAAATGCTCATGATTCTCAT
ATTGCGTGCTTTACCTCACATTGGATGGCC
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