FC878396

Overview
NameFC878396
Unique NameFC878396
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length872
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11629 contig Ccv1_Contig11629:234..1105. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878396 vs. ExPASy Swiss-Prot
Match: THRC1_ARATH (Threonine synthase 1, chloroplastic OS=Arabidopsis thaliana GN=TS1 PE=1 SV=1)

HSP 1 Score: 417.542 bits (1072), Expect = 4.764e-116
Identity = 216/281 (76.87%), Postives = 227/281 (80.78%), Query Frame = 1
Query:   46 MASCSLFHPQT-----KIKPFNQNHPR-LTYHPPTVISCSFXXXXXXXXXXXXXXXXXXXXXDENIRDEARRQRSTTNNTFSAKYVPFNAGPDSPEFYSLDEIVYRSRSGGLLDVQHDMESLKKFDGAYWRDLFDSRVGKTTWPYGSGVWSKKEWVLPEIDPDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDT 870
            MAS  LF+        K  P  ++    L  H P VISC+                      ++NIRDEARR RS   N FSAKYVPFNA P S E YSLDEIVYRSRSGGLLDV+HDME+LK+FDGAYWRDLFDSRVGK+TWPYGSGVWSKKEWVLPEID DDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKIS+AQLVQPIANGAFVLSIDT
Sbjct:    1 MASSCLFNASVSSLNPKQDPIRRHRSTSLLRHRPVVISCT--ADGNNIKAPIETAVKPPHRTEDNIRDEARRNRSNAVNPFSAKYVPFNAAPGSTESYSLDEIVYRSRSGGLLDVEHDMEALKRFDGAYWRDLFDSRVGKSTWPYGSGVWSKKEWVLPEIDDDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDT 279          
BLAST of FC878396 vs. ExPASy Swiss-Prot
Match: THRC_SOLTU (Threonine synthase, chloroplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 405.986 bits (1042), Expect = 1.434e-112
Identity = 199/219 (90.87%), Postives = 208/219 (94.98%), Query Frame = 1
Query:  214 DENIRDEARRQRSTTNNTFSAKYVPFNAGPDSPEFYSLDEIVYRSRSGGLLDVQHDMESLKKFDGAYWRDLFDSRVGKTTWPYGSGVWSKKEWVLPEIDPDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDT 870
            DENIR+EARR  S+ N  FSA+YVPFNAGP+S E+YSLDEIVYRSRSGGLLDVQHDM++LKKFDG YWR LFDSRVGKTTWPYGSGVWSKKEWVLPEID DDIVSAFEGNSNLFWAERFGKQFLGM DLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKM +PVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKIS+AQLVQPIANGAFVLSIDT
Sbjct:   56 DENIREEARRHCSSHN--FSARYVPFNAGPNSDEWYSLDEIVYRSRSGGLLDVQHDMDALKKFDGQYWRSLFDSRVGKTTWPYGSGVWSKKEWVLPEIDSDDIVSAFEGNSNLFWAERFGKQFLGMTDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMHKPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDT 272          
BLAST of FC878396 vs. ExPASy Swiss-Prot
Match: THRC2_ARATH (Threonine synthase 2, chloroplastic OS=Arabidopsis thaliana GN=TS2 PE=1 SV=1)

HSP 1 Score: 382.489 bits (981), Expect = 1.698e-105
Identity = 196/275 (71.27%), Postives = 215/275 (78.18%), Query Frame = 1
Query:   46 MASCSLFHPQTKIKPFNQNHPRLTYHPPTVISCSFXXXXXXXXXXXXXXXXXXXXXDENIRDEARRQRSTTNNTFSAKYVPFNAGPDSPEFYSLDEIVYRSRSGGLLDVQHDMESLKKFDGAYWRDLFDSRVGKTTWPYGSGVWSKKEWVLPEIDPDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDT 870
            MAS SL H  T    +  +H   +  P +  S +                      DENIRDEARR+     N  SA+YVPFNA P S E YSLDEIVYRS+SG LLDVQHD  +LK++DG +WR+LFDSRVGKT WPYGSGVWSKKEWVLPEID DDIVSAFEGNSNLFWAERFGKQ+L MNDLWVKHCGISHTGSFKDLGM+VLVSQVNRLRKM +PV+GVGCASTGDTSAALSAYCASAGIPSIVFLPA+KIS+AQLVQPIANGAFVLSIDT
Sbjct:    1 MASFSLPHSAT----YFPSHSETSLKPHSAASFTVRCTSASPAVPPQTPQKPRRSPDENIRDEARRRPHQLQN-LSARYVPFNAPPSSTESYSLDEIVYRSQSGALLDVQHDFAALKRYDGEFWRNLFDSRVGKTNWPYGSGVWSKKEWVLPEIDDDDIVSAFEGNSNLFWAERFGKQYLQMNDLWVKHCGISHTGSFKDLGMSVLVSQVNRLRKMNKPVIGVGCASTGDTSAALSAYCASAGIPSIVFLPADKISMAQLVQPIANGAFVLSIDT 270          
BLAST of FC878396 vs. ExPASy Swiss-Prot
Match: THRC_METJA (Probable threonine synthase OS=Methanocaldococcus jannaschii GN=thrC PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.775e-23
Identity = 72/182 (39.56%), Postives = 104/182 (57.14%), Query Frame = 1
Query:  319 YSLDEIVYRSRSGGLLDVQHDMESLKKFDGAYWRDLFDSRVGKTTWPYGSGVWSKKEWVLPEIDPDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSI 864
            Y +DEI+Y    GGLL++ +D E +K         + + ++ K       GVW   E+ LP  D   IVS  EG + L+      K+ LG+ +L+VK+ G + TGSFKD GMTV V++ N L      V  VGCASTG+TSA+L+AY A +G   IV LP  K+++ +L Q +  GA V+ +
Sbjct:   12 YDVDEIIYTCECGGLLEIIYDYEEIKD-------KVSEEKLRKRE----IGVWRYLEY-LPVKDESKIVSLCEGGTPLYRCNNLEKE-LGIKELYVKNEGANPTGSFKDRGMTVGVTRANELG-----VEVVGCASTGNTSASLAAYSARSGKKCIVLLPEGKVALGKLAQAMFYGAKVIQV 175          
BLAST of FC878396 vs. ExPASy Swiss-Prot
Match: THRC_SYNY3 (Threonine synthase OS=Synechocystis sp. (strain PCC 6803) GN=thrC PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.526e-13
Identity = 46/124 (37.10%), Postives = 71/124 (57.26%), Query Frame = 1
Query:  496 LPEIDPDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSID 867
            LP  D   +V+  EGN+ L  A    K+      ++VK+ G++ TGSFKD GMT+ +S+       +     V CASTG+TSAA +AY   AG+ + V +P   +++ +L Q +  GA V++ID
Sbjct:   45 LPVSDQTPVVTLLEGNTPLIPAPAIAKRIGKDVRVFVKYDGLNPTGSFKDRGMTMAISKAK-----EAGAKAVICASTGNTSAAAAAYARRAGLRAFVIIPDGYVALGKLGQALIYGAEVIAID 163          
BLAST of FC878396 vs. ExPASy Swiss-Prot
Match: THRC_MYCLE (Probable threonine synthase OS=Mycobacterium leprae GN=thrC PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.292e-12
Identity = 54/138 (39.13%), Postives = 77/138 (55.80%), Query Frame = 1
Query:  454 WPYGSGVWSKKEWVLPEIDPDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSID 867
            WP   GV +     LP  D    V+  EG + L  A R  +Q      L V+  G++ TGSFKD GMT+ V+    L + +R V+   CASTG+TSA+ +AY A AGI   V +P  KI++ +L Q + +GA ++ ID
Sbjct:   12 WP---GVIAAYRDRLPVGDDWTPVTLLEGGTPLIAAPRLSEQTGCTIHLKVE--GLNPTGSFKDRGMTMAVTDA--LARGQRAVL---CASTGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQID 139          
BLAST of FC878396 vs. ExPASy Swiss-Prot
Match: THRC_BACHD (Threonine synthase OS=Bacillus halodurans GN=thrC PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.292e-12
Identity = 49/132 (37.12%), Postives = 77/132 (58.33%), Query Frame = 1
Query:  469 GVWSKKEWVLPEIDPDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSI 864
            G+  + +  LP  +   +++  EGN+ L   E   K++ G+   +VK+ G + TGSFKD GM + V++     +  R ++   CASTG+TSAA +AY A AG+  IV +P  KI++ +L Q +  GA VL I
Sbjct:    6 GLLQEYKEFLPVTEETPLLTLGEGNTPLIPLENLSKEW-GVK-AYVKYEGANPTGSFKDRGMVMAVAKAKE--EGSRTII---CASTGNTSAAAAAYGARAGLRCIVVIPEGKIALGKLAQAVMYGAEVLEI 130          
BLAST of FC878396 vs. ExPASy Swiss-Prot
Match: THRC_BACSU (Threonine synthase OS=Bacillus subtilis GN=thrC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.204e-12
Identity = 47/124 (37.90%), Postives = 70/124 (56.45%), Query Frame = 1
Query:  496 LPEIDPDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSID 867
            LP  D    ++  EGN+ L    +  +Q LG+ +L VK  G++ TGSFKD GM + V++             + CASTG+TSAA +AY A A +  IV +P  KI+  +L Q +  GA +++ID
Sbjct:   13 LPVTDQTPALTLHEGNTPLIHLPKLSEQ-LGI-ELHVKTEGVNPTGSFKDRGMVMAVAKAKEEGNDT-----IMCASTGNTSAAAAAYAARANMKCIVIIPNGKIAFGKLAQAVMYGAEIIAID 129          
BLAST of FC878396 vs. ExPASy Swiss-Prot
Match: THRC_MYCTU (Probable threonine synthase OS=Mycobacterium tuberculosis GN=thrC PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.759e-12
Identity = 54/138 (39.13%), Postives = 75/138 (54.35%), Query Frame = 1
Query:  454 WPYGSGVWSKKEWVLPEIDPDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSID 867
            WP   GV +     LP  D    V+  EG + L  A    KQ      L V+  G++ TGSFKD GMT+ V+    L   +R V+   CASTG+TSA+ +AY A AGI   V +P  KI++ +L Q + +GA ++ ID
Sbjct:   12 WP---GVIAAYRDRLPVGDDWTPVTLLEGGTPLIAATNLSKQTGCTIHLKVE--GLNPTGSFKDRGMTMAVTDA--LAHGQRAVL---CASTGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQID 139          
BLAST of FC878396 vs. ExPASy Swiss-Prot
Match: THRC_MYCBO (Probable threonine synthase OS=Mycobacterium bovis GN=thrC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.759e-12
Identity = 54/138 (39.13%), Postives = 75/138 (54.35%), Query Frame = 1
Query:  454 WPYGSGVWSKKEWVLPEIDPDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSID 867
            WP   GV +     LP  D    V+  EG + L  A    KQ      L V+  G++ TGSFKD GMT+ V+    L   +R V+   CASTG+TSA+ +AY A AGI   V +P  KI++ +L Q + +GA ++ ID
Sbjct:   12 WP---GVIAAYRDRLPVGDDWTPVTLLEGGTPLIAATNLSKQTGCTIHLKVE--GLNPTGSFKDRGMTMAVTDA--LAHGQRAVL---CASTGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQID 139          
The following BLAST results are available for this feature:
BLAST of FC878396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
THRC1_ARATH4.764e-11676.87Threonine synthase 1, chloroplastic OS=Arabidopsis... [more]
THRC_SOLTU1.434e-11290.87Threonine synthase, chloroplastic OS=Solanum tuber... [more]
THRC2_ARATH1.698e-10571.27Threonine synthase 2, chloroplastic OS=Arabidopsis... [more]
THRC_METJA2.775e-2339.56Probable threonine synthase OS=Methanocaldococcus ... [more]
THRC_SYNY31.526e-1337.10Threonine synthase OS=Synechocystis sp. (strain PC... [more]
THRC_MYCLE1.292e-1239.13Probable threonine synthase OS=Mycobacterium lepra... [more]
THRC_BACHD1.292e-1237.12Threonine synthase OS=Bacillus halodurans GN=thrC ... [more]
THRC_BACSU2.204e-1237.90Threonine synthase OS=Bacillus subtilis GN=thrC PE... [more]
THRC_MYCTU3.759e-1239.13Probable threonine synthase OS=Mycobacterium tuber... [more]
THRC_MYCBO3.759e-1239.13Probable threonine synthase OS=Mycobacterium bovis... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA15CB03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA15CB03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878396 ID=FC878396; Name=FC878396; organism=Citrus clementina; type=EST; length=872bp
CACAAAGATACCCAAAACGACAGCCGCTGTGAGCATTTATCGAACATGGC
ATCTTGCTCACTGTTTCACCCCCAAACCAAAATCAAACCGTTCAATCAAA
ACCACCCTCGCCTCACATACCATCCGCCCACCGTTATCTCTTGCAGCTTC
TCCACATCCAATCCCTCCTCTCCTCCTCCACCAGCAGCGGCTTCAAAAAA
TCGCCGCGCAGCCGATGAGAACATTCGTGACGAAGCTCGACGACAACGTT
CCACTACAAATAACACTTTTTCCGCGAAGTACGTACCCTTCAATGCGGGT
CCTGATTCACCCGAGTTCTACTCGCTCGACGAGATTGTCTACCGGAGCCG
CTCCGGCGGCCTTCTCGACGTTCAGCACGACATGGAGTCGTTGAAGAAAT
TCGACGGCGCCTACTGGAGAGACCTCTTCGACTCTCGCGTGGGTAAGACC
ACTTGGCCTTATGGTTCCGGAGTGTGGAGCAAAAAGGAGTGGGTCCTACC
TGAGATCGATCCCGACGACATTGTTTCGGCCTTTGAAGGGAACTCCAACT
TGTTCTGGGCGGAGCGTTTTGGCAAACAGTTCCTGGGCATGAATGATTTG
TGGGTTAAACACTGCGGTATTAGCCACACTGGGAGTTTCAAAGACTTGGG
CATGACCGTTTTGGTCAGCCAAGTCAACAGACTTCGTAAAATGAAACGAC
CCGTCGTCGGAGTCGGCTGTGCATCCACCGGTGACACATCAGCTGCTCTA
TCTGCTTATTGTGCCTCAGCAGGTATTCCTTCCATTGTGTTTTTACCTGC
CAATAAGATTTCAATAGCTCAATTGGTGCAGCCAATTGCCAATGGGGCTT
TTGTTTTGAGTATTGATACTGA
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