FC878400

Overview
NameFC878400
Unique NameFC878400
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length885
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878400_ssr61 microsatellite FC878400_ssr61:61..72. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11040 contig Ccv1_Contig11040:201..1085. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878400 vs. ExPASy Swiss-Prot
Match: MO25N_ARATH (Putative MO25-like protein At5g47540 OS=Arabidopsis thaliana GN=At5g47540 PE=2 SV=1)

HSP 1 Score: 387.497 bits (994), Expect = 5.431e-107
Identity = 190/231 (82.25%), Postives = 218/231 (94.37%), Query Frame = 1
Query:  202 MKGLFKSKPRTPVDIVRQTRDLIIYANRSA---DVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYNWFFAEYNSKLLESSHYITR 885
            MKGLFKSKPRTP D+VRQTRDL+++++RS    D+R+SKR++KMAEL +NIR++KSILYGNSE+EPV+EACAQLT EFF+E+TLRLLITCLPKLNLE RKDATQVVANLQRQQV+S+LIASDYLEANIDL+D+LI G+ENTDMALHYGAM RECIRHQ VA+YVLES H+KKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFL+KN +WFFA+YNSKLLESS+YITR
Sbjct:    1 MKGLFKSKPRTPADLVRQTRDLLLFSDRSTSLPDLRDSKRDEKMAELSRNIRDMKSILYGNSEAEPVAEACAQLTQEFFKEDTLRLLITCLPKLNLETRKDATQVVANLQRQQVNSRLIASDYLEANIDLMDVLIEGFENTDMALHYGAMFRECIRHQIVAKYVLESDHVKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLTKNEDWFFADYNSKLLESSNYITR 231          
BLAST of FC878400 vs. ExPASy Swiss-Prot
Match: MO25M_ARATH (Putative MO25-like protein At4g17270 OS=Arabidopsis thaliana GN=At4g17270 PE=2 SV=1)

HSP 1 Score: 366.311 bits (939), Expect = 1.296e-100
Identity = 182/231 (78.79%), Postives = 210/231 (90.91%), Query Frame = 1
Query:  202 MKGLFKSKPRTPVDIVRQTRDLIIYANRS---ADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYNWFFAEYNSKLLESSHYITR 885
            M+GLFKSKPRTP DIVRQTRDL++YA+RS    D+RESKRE+KM EL K+IR+LK ILYGNSE+EPV+EACAQLT EFF+ +TLR L+T LP LNLEARKDATQVVANLQRQQV+S+LIA+DYLE+NIDL+D L+ G+ENTDMALHYG M RECIRHQ VA+YVL+S+H+KKFF YIQLPNFDIAADAAATFKELLTRHKSTVAEFL KN +WFFA+YNSKLLES++YITR
Sbjct:    1 MRGLFKSKPRTPADIVRQTRDLLLYADRSNSFPDLRESKREEKMVELSKSIRDLKLILYGNSEAEPVAEACAQLTQEFFKADTLRRLLTSLPNLNLEARKDATQVVANLQRQQVNSRLIAADYLESNIDLMDFLVDGFENTDMALHYGTMFRECIRHQIVAKYVLDSEHVKKFFYYIQLPNFDIAADAAATFKELLTRHKSTVAEFLIKNEDWFFADYNSKLLESTNYITR 231          
BLAST of FC878400 vs. ExPASy Swiss-Prot
Match: MO25L_ARATH (MO25-like protein At2g03410 OS=Arabidopsis thaliana GN=At2g03410 PE=2 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 8.732e-81
Identity = 148/232 (63.79%), Postives = 186/232 (80.17%), Query Frame = 1
Query:  202 MKGLFKSKPRTPVDIVRQTRDLIIYAN---RSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENT-DMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYNWFFAEYNSKLLESSHYITR 885
            MKGLFK+K R P +IVRQTRDLI  A       D R SKR    AELC+NIR+LKSILYGN E+EPV EAC  LT EFFR +TLR LI  +PKL+LEARKDATQ+VANLQ+QQV  +L+AS+YLE+N+D++D L+ G ++  ++ALHY  ML+EC+RHQ VA+Y+LES++++KFFDY+QLP FD+A DA+  F+ELLTRHKSTVAE+L+KNY WFFAEYN+KLLE   Y T+
Sbjct:    1 MKGLFKNKSRLPGEIVRQTRDLIALAESEEEETDARNSKRLGICAELCRNIRDLKSILYGNGEAEPVPEACLLLTQEFFRADTLRPLIKSIPKLDLEARKDATQIVANLQKQQVEFRLVASEYLESNLDVIDSLVEGIDHDHELALHYTGMLKECVRHQVVAKYILESKNLEKFFDYVQLPYFDVATDASKIFRELLTRHKSTVAEYLAKNYEWFFAEYNTKLLEKGSYFTK 232          
BLAST of FC878400 vs. ExPASy Swiss-Prot
Match: CAB39_HUMAN (Calcium-binding protein 39 OS=Homo sapiens GN=CAB39 PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.902e-43
Identity = 89/224 (39.73%), Postives = 141/224 (62.95%), Query Frame = 1
Query:  214 FKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYNWFFAEYNSKLLESSHYITR 885
            F    ++P DIV+  ++ +    +  D+ + K E    E+ KN+  +K ILYG +E EP +EA AQL  E +    L  L+  L  ++ E +KD  Q+  N+ R+Q+ ++    +Y+    ++L +L+ GYE+ ++AL+ G MLRECIRH+ +A+ +L S+    FF Y+++  FDIA+DA ATFK+LLTRHK   AEFL ++Y+ FF+EY  KLL S +Y+T+
Sbjct:    5 FGKSHKSPADIVKNLKESMAVLEKQ-DISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEY-EKLLHSENYVTK 226          
BLAST of FC878400 vs. ExPASy Swiss-Prot
Match: CAB39_BOVIN (Calcium-binding protein 39 OS=Bos taurus GN=CAB39 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.902e-43
Identity = 89/224 (39.73%), Postives = 141/224 (62.95%), Query Frame = 1
Query:  214 FKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYNWFFAEYNSKLLESSHYITR 885
            F    ++P DIV+  ++ +    +  D+ + K E    E+ KN+  +K ILYG +E EP +EA AQL  E +    L  L+  L  ++ E +KD  Q+  N+ R+Q+ ++    +Y+    ++L +L+ GYE+ ++AL+ G MLRECIRH+ +A+ +L S+    FF Y+++  FDIA+DA ATFK+LLTRHK   AEFL ++Y+ FF+EY  KLL S +Y+T+
Sbjct:    5 FGKSHKSPADIVKNLKESMAVLEKQ-DISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEY-EKLLHSENYVTK 226          
BLAST of FC878400 vs. ExPASy Swiss-Prot
Match: CAB39_MOUSE (Calcium-binding protein 39 OS=Mus musculus GN=Cab39 PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.484e-43
Identity = 89/224 (39.73%), Postives = 141/224 (62.95%), Query Frame = 1
Query:  214 FKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYNWFFAEYNSKLLESSHYITR 885
            F    ++P DIV+  ++ +    +  D+ + K E    E+ KN+  +K ILYG +E EP +EA AQL  E +    L  L+  L  ++ E +KD  Q+  N+ R+Q+ ++    +Y+    ++L +L+ GYE+ ++AL+ G MLRECIRH+ +A+ +L S+    FF Y+++  FDIA+DA ATFK+LLTRHK   AEFL ++Y+ FF+EY  KLL S +Y+T+
Sbjct:    5 FGKSHKSPADIVKNLKESMAVLEKQ-DISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNSGLLGTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEY-EKLLHSENYVTK 226          
BLAST of FC878400 vs. ExPASy Swiss-Prot
Match: CB39L_HUMAN (Calcium-binding protein 39-like OS=Homo sapiens GN=CAB39L PE=1 SV=3)

HSP 1 Score: 172.94 bits (437), Expect = 2.103e-42
Identity = 93/230 (40.43%), Postives = 143/230 (62.17%), Query Frame = 1
Query:  199 KMKGLFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAE-LCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYNWFFAEYNSKLLESSHYITR 885
            K   LF    + P +IV+  +D     N +   ++ K+ DK +E + K+++ +K IL G +E EP +EA AQL  E +    L  LI  L  ++ E +KD TQ+  N+ R+Q+ ++    +Y+ A+  +L +L+ GYE   +AL  G MLRECIRH+ +A+ +L S   + FF Y++L  FDIA+DA ATFK+LLTRHK  VA+FL +NY+  F +Y  KLL+S +Y+T+
Sbjct:    2 KKMPLFSKSHKNPAEIVKILKD-----NLAILEKQDKKTDKASEEVSKSLQAMKEILCGTNEKEPPTEAVAQLAQELYSSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVEYISAHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVELSTFDIASDAFATFKDLLTRHKVLVADFLEQNYDTIFEDY-EKLLQSENYVTK 225          
BLAST of FC878400 vs. ExPASy Swiss-Prot
Match: MO25M_CAEEL (MO25-like protein 2 OS=Caenorhabditis elegans GN=mop-25.2 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.586e-42
Identity = 91/229 (39.74%), Postives = 138/229 (60.26%), Query Frame = 1
Query:  202 MKGLFKSKPRTPVDIVRQTRDLIIYANR-SADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYNWFFAEYNSKLLESSHYITR 885
            +K LF    +TP D+V+  RD ++  +R   +  E K E  + E  K +   K+ +YG+  +EP +E   QL  E +  N L +LI  L K   E +KD   V  NL R+Q+ ++    +YL A  ++L  L+ GYE  D+AL  G+MLRE +RH+ +AR VL S++ ++FF ++Q   FDIA DA +TFK+L+T+HK+  AE+L  NY+ FF +Y S L  S +Y+TR
Sbjct:    2 LKPLFGKADKTPADVVKNLRDALLVIDRHGTNTSERKVEKAIEETAKMLALAKTFIYGSDANEPNNEQVTQLAQEVYNANVLPMLIKHLHKFEFECKKDVASVFNNLLRRQIGTRSPTVEYLAARPEILITLLLGYEQPDIALTCGSMLREAVRHEHLARIVLYSEYFQRFFVFVQSDVFDIATDAFSTFKDLMTKHKNMCAEYLDNNYDRFFGQY-SALTNSENYVTR 229          
BLAST of FC878400 vs. ExPASy Swiss-Prot
Match: CB39L_MOUSE (Calcium-binding protein 39-like OS=Mus musculus GN=Cab39l PE=1 SV=3)

HSP 1 Score: 171.014 bits (432), Expect = 7.990e-42
Identity = 91/230 (39.57%), Postives = 143/230 (62.17%), Query Frame = 1
Query:  199 KMKGLFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAE-LCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYNWFFAEYNSKLLESSHYITR 885
            K   LF    + P +IV+  +D     N +   ++ K+ DK +E + K+++ +K IL G ++ EP +EA AQL  E +    L  LI  L  ++ E +KD TQ+  N+ R+Q+ ++    +Y+ ++  +L +L+ GYE   +AL  G MLRECIRH+ +A+ +L S   + FF Y++L  FDIA+DA ATFK+LLTRHK  VA+FL +NY+  F +Y  KLL+S +Y+T+
Sbjct:    2 KKMPLFSKSHKNPAEIVKILKD-----NLAILEKQDKKTDKASEEVSKSLQAMKEILCGTNDKEPPTEAVAQLAQELYSSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRCPTVEYISSHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVELSTFDIASDAFATFKDLLTRHKVLVADFLEQNYDTIFEDY-EKLLQSENYVTK 225          
BLAST of FC878400 vs. ExPASy Swiss-Prot
Match: MO25_DROME (Protein Mo25 OS=Drosophila melanogaster GN=Mo25 PE=2 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 2.842e-39
Identity = 85/228 (37.28%), Postives = 145/228 (63.60%), Query Frame = 1
Query:  211 LFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSE-ACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENT--DMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYNWFFAEYNSKLLESSHYITR 885
            LF    ++PV++V+  ++ I     + +  + K E    ++ KN+  +K++LYG+S++EP ++   AQL+ E +  N L LLI  L +++ E +K    +  N+ R+Q+ ++    +Y+    ++L  L+AGYE+   ++AL+ G MLREC R++++A+ +L S    KFF Y+++  FDIA+DA +TFKELLTRHK   AEFL  NY+ FF+++  +LL S +Y+TR
Sbjct:    3 LFGKSQKSPVELVKSLKEAI----NALEAGDRKVEKAQEDVSKNLVSIKNMLYGSSDAEPPADYVVAQLSQELYNSNLLLLLIQNLHRIDFEGKKHVALIFNNVLRRQIGTRSPTVEYICTKPEILFTLMAGYEDAHPEIALNSGTMLRECARYEALAKIMLHSDEFFKFFRYVEVSTFDIASDAFSTFKELLTRHKLLCAEFLDANYDKFFSQHYQRLLNSENYVTR 226          
The following BLAST results are available for this feature:
BLAST of FC878400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
MO25N_ARATH5.431e-10782.25Putative MO25-like protein At5g47540 OS=Arabidopsi... [more]
MO25M_ARATH1.296e-10078.79Putative MO25-like protein At4g17270 OS=Arabidopsi... [more]
MO25L_ARATH8.732e-8163.79MO25-like protein At2g03410 OS=Arabidopsis thalian... [more]
CAB39_HUMAN1.902e-4339.73Calcium-binding protein 39 OS=Homo sapiens GN=CAB3... [more]
CAB39_BOVIN1.902e-4339.73Calcium-binding protein 39 OS=Bos taurus GN=CAB39 ... [more]
CAB39_MOUSE2.484e-4339.73Calcium-binding protein 39 OS=Mus musculus GN=Cab3... [more]
CB39L_HUMAN2.103e-4240.43Calcium-binding protein 39-like OS=Homo sapiens GN... [more]
MO25M_CAEEL3.586e-4239.74MO25-like protein 2 OS=Caenorhabditis elegans GN=m... [more]
CB39L_MOUSE7.990e-4239.57Calcium-binding protein 39-like OS=Mus musculus GN... [more]
MO25_DROME2.842e-3937.28Protein Mo25 OS=Drosophila melanogaster GN=Mo25 PE... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA60DB03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA60DB03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878400 ID=FC878400; Name=FC878400; organism=Citrus clementina; type=EST; length=885bp
CTGTAACAACAACTCAGACAGCAAAATTAAATTCGAAAGCTGAAACCCTA
AAGCCTAATTAGAAGAAGAAGATACACAATAGGAATCTGTGCGTCAAAGC
CGAAAGCTGAGGCGCTCTCAGCCTCGGCGAGTCAATCGGTCCAGCGCCTC
TCGAGCTCAGCCAGTTCAAGTTCGATTAACGAATTAGACCCTAACACAAA
AATGAAGGGACTTTTCAAATCCAAGCCTCGTACTCCCGTCGACATCGTCC
GCCAAACTCGGGATCTTATTATTTACGCCAATCGCAGCGCAGATGTTCGT
GAATCGAAGCGCGAAGACAAGATGGCAGAGTTATGTAAAAACATCAGGGA
GTTAAAGTCAATACTTTATGGCAATAGTGAATCTGAGCCAGTTTCAGAGG
CATGTGCACAATTGACTGCAGAGTTCTTCAGGGAAAACACGTTACGGCTT
TTGATAACTTGTCTTCCAAAGTTGAACTTGGAGGCAAGGAAAGATGCCAC
TCAGGTTGTTGCTAATTTACAGAGGCAACAAGTTCACTCAAAGTTGATTG
CCTCTGACTACTTAGAAGCAAACATAGATCTTTTGGATATTCTGATAGCT
GGTTATGAAAACACAGACATGGCTTTACATTATGGTGCTATGCTTAGGGA
GTGTATTCGTCATCAGAGTGTTGCAAGATATGTGTTGGAATCCCAGCACA
TGAAGAAGTTTTTTGACTATATACAGCTTCCAAATTTTGACATTGCTGCA
GATGCTGCTGCAACTTTTAAGGAACTGTTGACAAGGCACAAATCCACTGT
GGCCGAATTTCTTTCTAAGAATTATAACTGGTTTTTTGCAGAATATAACT
CAAAACTGTTGGAATCTTCTCATTACATTACCAGA
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