FC878401

Overview
NameFC878401
Unique NameFC878401
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length882
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11714 contig Ccv1_Contig11714:68..949. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878401 vs. ExPASy Swiss-Prot
Match: PME68_ARATH (Probable pectinesterase 68 OS=Arabidopsis thaliana GN=PME68 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 5.471e-43
Identity = 86/143 (60.14%), Postives = 103/143 (72.03%), Query Frame = 2
Query:  131 FLSLALFQVTISATAQAANSTK-------HHHMWIGPVGHRVITVDVNGSGEFKSVQAAVDSVPERNRMNVLIQISAGCYIEKVTVPVSKPYITFQGAGRDRTVIEWHDRACDRGANGQQLRTYQTASVTVFANYFSARNISF 538
            F+S        S  A  +NST        HH  W+GP GH+VITV +NG  +F+SVQ AVDS+P+ N  ++ I+I+ G Y EKV VP +KPYITF+GAGRD T IEWHDRA D GANGQQLRTYQTASVTV+ANYF+ARNISF
Sbjct:   19 FVSFHCLCFRFSLVAACSNSTDDQQIQHHHHRKWVGPSGHKVITVSLNGHAQFRSVQDAVDSIPKNNNKSITIKIAPGFYREKVVVPATKPYITFKGAGRDVTAIEWHDRASDLGANGQQLRTYQTASVTVYANYFTARNISF 161          

HSP 2 Score: 114.005 bits (284), Expect = 1.153e-24
Identity = 51/57 (89.47%), Postives = 53/57 (92.98%), Query Frame = 1
Query:  712 VMFT*NTAPAPLPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAXRHYFKECY 882
            + FT NTAPAPLPGMQGWQA AFRISGDKA+FSGCGFYGAQDTLCDDA RHYFKECY
Sbjct:  159 ISFT-NTAPAPLPGMQGWQAVAFRISGDKAFFSGCGFYGAQDTLCDDAGRHYFKECY 214          
BLAST of FC878401 vs. ExPASy Swiss-Prot
Match: PME62_ARATH (Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT1 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.450e-19
Identity = 53/106 (50.00%), Postives = 70/106 (66.04%), Query Frame = 2
Query:  230 RVITVDVNGSGEFKSVQAAVDSVPERNRMNVLIQISAGCYIEKVTVPVSKPYITFQG--AGRDRTVIEWHDRACDRGANGQQLRTYQTASVTVFANYFSARNISFK 541
            RVI VD NG G+  +VQ AVD VP+ N   V I I  G Y EKV VP SKPYI+F G  +    TVI W D+A D G +G++L TY+TASV++ +++F A  I+F+
Sbjct:   80 RVIVVDKNGGGDSVTVQGAVDMVPDSNSQRVKIFILPGIYREKVIVPKSKPYISFIGNESYAGDTVISWSDKASDLGCDGKELGTYRTASVSIESDFFCATAITFE 185          
BLAST of FC878401 vs. ExPASy Swiss-Prot
Match: PME53_ARATH (Probable pectinesterase 53 OS=Arabidopsis thaliana GN=PME53 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.830e-15
Identity = 38/97 (39.18%), Postives = 62/97 (63.92%), Query Frame = 2
Query:  251 NGSGEFKSVQAAVDSVPERNRMNVLIQISAGCYIEKVTVPVSKPYITFQGAGRDRTVIEWHDRACDRGANGQQLRTYQTASVTVFANYFSARNISFK 541
            +  G+F  +Q A+DS+P  N + V+I++ AG Y EKV++P  K +IT +G G ++T +EW D A    + G  + TY +AS  V + +F A+NI+F+
Sbjct:   91 SNKGDFTKIQDAIDSLPLINFVRVVIKVHAGVYKEKVSIPPLKAFITIEGEGAEKTTVEWGDTAQTPDSKGNPMGTYNSASFAVNSPFFVAKNITFR 187          

HSP 2 Score: 69.3218 bits (168), Expect = 3.256e-11
Identity = 31/52 (59.62%), Postives = 34/52 (65.38%), Query Frame = 1
Query:  727 NTAPAPLPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAXRHYFKECY 882
            NT P PLPG  G QA A R+S D A F GC   GAQDTL D   RHY+K+CY
Sbjct:  188 NTTPVPLPGAVGKQAVALRVSADNAAFFGCRMLGAQDTLYDHLGRHYYKDCY 239          
BLAST of FC878401 vs. ExPASy Swiss-Prot
Match: PME15_ARATH (Probable pectinesterase 15 OS=Arabidopsis thaliana GN=PME15 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.826e-15
Identity = 50/127 (39.37%), Postives = 68/127 (53.54%), Query Frame = 2
Query:  197 HHH-------MWIGPVGHR-----VITVDVNGSGEFKSVQAAVDSVPERNRMNVLIQISAGCYIEKVTVPVSKPYITFQGAGRDRTVIEWHDRACDRGANGQQLRTYQTASVTVFANYFSARNISFK 541
            HHH        W   + H+     V+TVD++G G F +VQ+A+D VP+ +    LI +++G Y EKVTV  +K  +  QG G   T IEW+D A   G       T  + S  VFA  F+A NISFK
Sbjct:   66 HHHEPIKCCEKWTSRLRHQYKTSLVLTVDLHGCGNFSNVQSAIDVVPDLSSSKTLIIVNSGSYREKVTVNENKTNLVIQGRGYQNTSIEWNDTAKSAG------NTADSFSFVVFAANFTAYNISFK 186          

HSP 2 Score: 75.0998 bits (183), Expect = 5.933e-13
Identity = 34/52 (65.38%), Postives = 37/52 (71.15%), Query Frame = 1
Query:  727 NTAPAPLPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAXRHYFKECY 882
            N AP P PG    QA A RI GD+A F GCGFYGAQDTL DD  RH+FKEC+
Sbjct:  187 NNAPEPDPGEADAQAVALRIEGDQAAFYGCGFYGAQDTLLDDKGRHFFKECF 238          
BLAST of FC878401 vs. ExPASy Swiss-Prot
Match: PME8_ARATH (Probable pectinesterase 8 OS=Arabidopsis thaliana GN=PME8 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 5.336e-14
Identity = 46/101 (45.54%), Postives = 62/101 (61.39%), Query Frame = 2
Query:  236 ITVDVNGSGEFKSVQAAVDSVPERNRMNVLIQISAGCYIEKVTVPVSKPYITFQGAGRDRTVIEWHDRACDRGANGQQLRTYQTASVTVFANYFSARNISF 538
            + VD NG   F +VQ+AVD+V   ++   +I I++G Y EKV +P +KP IT QG G D T I W+D A    ANG    T+  A+V VF + F A+NISF
Sbjct:   91 LCVDKNGCCNFTTVQSAVDAVGNFSQRRNVIWINSGMYYEKVVIPKTKPNITLQGQGFDITAIAWNDTA--YSANG----TFYCATVQVFGSQFVAKNISF 185          

HSP 2 Score: 76.6406 bits (187), Expect = 2.039e-13
Identity = 34/52 (65.38%), Postives = 39/52 (75.00%), Query Frame = 1
Query:  727 NTAPAPLPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAXRHYFKECY 882
            N AP P PG  G QA A RI+GD++ F GCGF+GAQDTL DD  RHYFK+CY
Sbjct:  187 NVAPIPKPGDVGAQAVAIRIAGDESAFVGCGFFGAQDTLHDDRGRHYFKDCY 238          
BLAST of FC878401 vs. ExPASy Swiss-Prot
Match: PME49_ARATH (Probable pectinesterase 49 OS=Arabidopsis thaliana GN=PME49 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.322e-12
Identity = 34/52 (65.38%), Postives = 37/52 (71.15%), Query Frame = 1
Query:  727 NTAPAPLPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAXRHYFKECY 882
            NT+P P PG QG QA A RI+GDKA F  C FYG QDTLCDD   H+FK CY
Sbjct:  162 NTSPMPKPGTQG-QALAMRINGDKAAFYNCRFYGFQDTLCDDRGNHFFKNCY 212          

HSP 2 Score: 70.0922 bits (170), Expect = 1.898e-11
Identity = 38/102 (37.25%), Postives = 60/102 (58.82%), Query Frame = 2
Query:  230 RVITVDVNGSGEFKSVQAAVDSVPERNRMNVLIQISAGCYIEKVTVPVSKPYITFQGAGRDRTVIEWHDRACDRGANGQQLRTYQTASVTVFANYFSARNIS 535
            RVI V+ NG G+FK++ AA+ S+P  N+  V+I+++ G Y EKVTV V +PY+T  G     T + +   A   G       T ++A++ V+A  F A N++
Sbjct:   65 RVIIVNQNGGGDFKTINAAIKSIPLANKNRVIIKLAPGIYHEKVTVDVGRPYVTLLGKPGAETNLTYAGTAAKYG-------TVESATLIVWATNFLAANLN 159          
BLAST of FC878401 vs. ExPASy Swiss-Prot
Match: PME14_ARATH (Putative pectinesterase 14 OS=Arabidopsis thaliana GN=PME14 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.945e-12
Identity = 42/96 (43.75%), Postives = 53/96 (55.21%), Query Frame = 1
Query:  595 GVSIVNYSIKMY*LTATMHGMSHFFSAKLNCNKLKVEHMVMFT*NTAPAPLPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAXRHYFKECY 882
            G+     SI+    TA+ +G    FS  +   K    + + F  NTAPAP PG    QA A ++ GDKA F GCGFYG QDTL D   RH+FK C+
Sbjct:   96 GMGYSRTSIEWNNTTASSNGTFSSFSVAVFGEKFTA-YNISFK-NTAPAPNPGAVDAQAVALKVVGDKAAFYGCGFYGNQDTLLDQEGRHFFKGCF 189          
BLAST of FC878401 vs. ExPASy Swiss-Prot
Match: PME50_ARATH (Probable pectinesterase 50 OS=Arabidopsis thaliana GN=PME50 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.824e-12
Identity = 35/104 (33.65%), Postives = 62/104 (59.62%), Query Frame = 2
Query:  230 RVITVDVNGSGEFKSVQAAVDSVPERNRMNVLIQISAGCYIEKVTVPVSKPYITFQGAGRDRTVIEWHDRACDRGANGQQLRTYQTASVTVFANYFSARNISFK 541
            ++ITV+  G   FK++  A+ S+P  N+  V+I+++ G Y EKVT+ +++P+IT  G     TV+ +H  A   G       T ++A++ V+A YF A +++ K
Sbjct:   65 QIITVNQKGGANFKTLNEAIKSIPTGNKNRVIIKLAPGVYNEKVTIDIARPFITLLGQPGAETVLTYHGTAAQYG-------TVESATLIVWAEYFQAAHLTIK 161          

HSP 2 Score: 71.633 bits (174), Expect = 6.560e-12
Identity = 33/52 (63.46%), Postives = 37/52 (71.15%), Query Frame = 1
Query:  727 NTAPAPLPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAXRHYFKECY 882
            NTAP P PG QG QA A RI+ DKA F  C F+G QDTLCDD   H+FK+CY
Sbjct:  162 NTAPMPKPGSQG-QALAMRINADKAAFYSCRFHGFQDTLCDDKGNHFFKDCY 212          
BLAST of FC878401 vs. ExPASy Swiss-Prot
Match: PME67_ARATH (Probable pectinesterase 67 OS=Arabidopsis thaliana GN=PME67 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.228e-11
Identity = 38/105 (36.19%), Postives = 60/105 (57.14%), Query Frame = 2
Query:  227 HRVITVDVNGSGEFKSVQAAVDSVPERNRMNVLIQISAGCYIEKVTVPVSKPYITFQGAGRDRTVIEWHDRACDRGANGQQLRTYQTASVTVFANYFSARNISFK 541
            +R I VD+ G G++ SVQ A+D+VP  N   +++ +  G Y E+V +P +KP+I  +G G+ +TVIE    + D  A         +A+  V AN+F A  IS +
Sbjct:   43 NRSIIVDIEGKGDYTSVQKAIDAVPVGNSNWIIVHVRKGIYKERVHIPENKPFIFMRGNGKGKTVIESSQSSVDNVA---------SATFKVEANHFVAFGISIR 138          
BLAST of FC878401 vs. ExPASy Swiss-Prot
Match: PME55_ARATH (Probable pectinesterase 55 OS=Arabidopsis thaliana GN=PME55 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.522e-11
Identity = 31/69 (44.93%), Postives = 42/69 (60.87%), Query Frame = 2
Query:  236 ITVDVNGSGEFKSVQAAVDSVPERNRMNVLIQISAGCYIEKVTVPVSKPYITFQGAGRDRTVIEWHDRA 442
            + VD +G G F ++Q A+DSVP  N     I + AG Y EK+T+P  KP+I   GAG+  T +EW D A
Sbjct:   29 VIVDQSGHGNFTTIQKAIDSVPINNTHWFFINVKAGLYREKITIPQKKPFIVIVGAGKRSTRVEWDDHA 97          
The following BLAST results are available for this feature:
BLAST of FC878401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
PME68_ARATH5.471e-4360.14Probable pectinesterase 68 OS=Arabidopsis thaliana... [more]
PME62_ARATH1.450e-1950.00Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT... [more]
PME53_ARATH2.830e-1539.18Probable pectinesterase 53 OS=Arabidopsis thaliana... [more]
PME15_ARATH4.826e-1539.37Probable pectinesterase 15 OS=Arabidopsis thaliana... [more]
PME8_ARATH5.336e-1445.54Probable pectinesterase 8 OS=Arabidopsis thaliana ... [more]
PME49_ARATH1.322e-1265.38Probable pectinesterase 49 OS=Arabidopsis thaliana... [more]
PME14_ARATH2.945e-1243.75Putative pectinesterase 14 OS=Arabidopsis thaliana... [more]
PME50_ARATH3.824e-1233.65Probable pectinesterase 50 OS=Arabidopsis thaliana... [more]
PME67_ARATH4.228e-1136.19Probable pectinesterase 67 OS=Arabidopsis thaliana... [more]
PME55_ARATH5.522e-1144.93Probable pectinesterase 55 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA15CB04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA15CB04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878401 ID=FC878401; Name=FC878401; organism=Citrus clementina; type=EST; length=882bp
AATTAAATTTCTCGGAGCCTCTTCGAAAGCAGATTACACACGTTCTCTCT
GACAATTTTAAATAATGCTGTTTAATTTAATGTCATCTGTTACTTGTTTT
TCGTTCTTTCACTTGTACCTTGTTACTTCTTTCTTGTCTCTTGCATTGTT
TCAGGTTACGATCTCGGCCACAGCTCAAGCTGCAAATTCTACTAAGCACC
ATCACATGTGGATTGGACCCGTCGGCCACCGTGTAATCACCGTTGATGTT
AATGGGTCCGGCGAGTTCAAATCGGTCCAAGCTGCCGTTGATTCCGTCCC
TGAAAGAAACAGAATGAACGTGCTTATTCAAATTAGCGCAGGTTGTTACA
TAGAGAAGGTGACGGTGCCAGTGTCGAAACCGTACATCACGTTTCAAGGT
GCAGGGAGGGATCGGACGGTGATCGAGTGGCATGATCGAGCATGTGATCG
TGGGGCTAATGGCCAGCAGCTGCGCACTTACCAGACAGCTTCTGTAACTG
TTTTTGCTAATTATTTCTCTGCTAGGAATATTAGCTTCAAGGTATATGAC
TAAAATCAAACTTAAATAATTGTACAAAGATGAAAGTACACACTGGGGTT
AGTATTGTAAATTATTCCATAAAAATGTATTAGCTAACTGCGACGATGCA
TGGCATGTCACATTTCTTCTCTGCGAAATTGAATTGCAATAAGTTAAAAG
TAGAACATATGGTAATGTTTACGTAGAACACAGCGCCAGCACCACTACCA
GGAATGCAAGGGTGGCAAGCGGCGGCGTTTAGGATATCCGGAGACAAGGC
TTACTTCTCAGGCTGTGGATTTTATGGGGCACAGGACACTCTTTGTGACG
ACGCANGGCGGCATTACTTCAAGGAATGTTAC
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