FC878404

Overview
NameFC878404
Unique NameFC878404
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length878
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10528 contig Ccv1_Contig10528:1..878. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC878404 vs. ExPASy Swiss-Prot
Match: SC61A_HARAN (Protein transport protein Sec61 subunit alpha OS=Harpagifer antarcticus GN=sec61a PE=2 SV=3)

HSP 1 Score: 447.588 bits (1150), Expect = 4.348e-125
Identity = 222/235 (94.47%), Postives = 231/235 (98.30%), Query Frame = 3 
Query:  174 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDNVRALREAFY 878
            MGIKFLEVIKPFC++LPEI KPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYW+RVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGM+IT+GQAIVYVMTGMYG+PSE+GAG+CLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSP TVNTGRGTEFEGA+IALFHLLATR D VRALREAFY
Sbjct:    1 MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPSEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGTEFEGAIIALFHLLATRTDKVRALREAFY 235
[Close]
BLAST of FC878404 vs. ExPASy Swiss-Prot
Match: SC61A_DISMA (Protein transport protein Sec61 subunit alpha OS=Dissostichus mawsoni GN=sec61a PE=2 SV=3)

HSP 1 Score: 447.588 bits (1150), Expect = 4.348e-125
Identity = 222/235 (94.47%), Postives = 231/235 (98.30%), Query Frame = 3 
Query:  174 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDNVRALREAFY 878
            MGIKFLEVIKPFC++LPEI KPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYW+RVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGM+IT+GQAIVYVMTGMYG+PSE+GAG+CLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSP TVNTGRGTEFEGA+IALFHLLATR D VRALREAFY
Sbjct:    1 MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPSEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGTEFEGAIIALFHLLATRTDKVRALREAFY 235
[Close]
BLAST of FC878404 vs. ExPASy Swiss-Prot
Match: SC61A_GADOC (Protein transport protein Sec61 subunit alpha OS=Gadus ogac GN=sec61a PE=2 SV=3)

HSP 1 Score: 446.432 bits (1147), Expect = 9.687e-125
Identity = 221/235 (94.04%), Postives = 231/235 (98.30%), Query Frame = 3 
Query:  174 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDNVRALREAFY 878
            MGIKFLEVIKPFC++LPEI KPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYW+RVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGM+IT+GQAIVYVMTGMYG+PSE+GAG+CL+IIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSP TVNTGRGTEFEGA+IALFHLLATR D VRALREAFY
Sbjct:    1 MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPSEMGAGICLVIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGTEFEGAIIALFHLLATRTDKVRALREAFY 235
[Close]
BLAST of FC878404 vs. ExPASy Swiss-Prot
Match: S61A2_ONCMY (Protein transport protein Sec61 subunit alpha isoform B OS=Oncorhynchus mykiss GN=sec61ab PE=2 SV=3)

HSP 1 Score: 446.432 bits (1147), Expect = 9.687e-125
Identity = 221/235 (94.04%), Postives = 231/235 (98.30%), Query Frame = 3 
Query:  174 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDNVRALREAFY 878
            MGIKFLEVIKPFC++LPEI KPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYW+RVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGM+IT+GQAIVYVMTGMYG+PS++GAG+CLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSP TVNTGRGTEFEGA+IALFHLLATR D VRALREAFY
Sbjct:    1 MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPSDMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGTEFEGAIIALFHLLATRTDKVRALREAFY 235
[Close]
BLAST of FC878404 vs. ExPASy Swiss-Prot
Match: S61A2_MOUSE (Protein transport protein Sec61 subunit alpha isoform 2 OS=Mus musculus GN=Sec61a2 PE=2 SV=3)

HSP 1 Score: 446.432 bits (1147), Expect = 9.687e-125
Identity = 221/235 (94.04%), Postives = 231/235 (98.30%), Query Frame = 3 
Query:  174 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDNVRALREAFY 878
            MGIKFLEVIKPFC++LPEI KPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYW+RVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGM+IT+GQAIVYVMTGMYG+P+E+GAG+CLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSP T+NTGRGTEFEGAVIALFHLLATR D VRALREAFY
Sbjct:    1 MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFY 235
[Close]
BLAST of FC878404 vs. ExPASy Swiss-Prot
Match: S61A2_HUMAN (Protein transport protein Sec61 subunit alpha isoform 2 OS=Homo sapiens GN=SEC61A2 PE=2 SV=3)

HSP 1 Score: 446.432 bits (1147), Expect = 9.687e-125
Identity = 221/235 (94.04%), Postives = 231/235 (98.30%), Query Frame = 3 
Query:  174 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDNVRALREAFY 878
            MGIKFLEVIKPFC++LPEI KPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYW+RVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGM+IT+GQAIVYVMTGMYG+P+E+GAG+CLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSP T+NTGRGTEFEGAVIALFHLLATR D VRALREAFY
Sbjct:    1 MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFY 235
[Close]
BLAST of FC878404 vs. ExPASy Swiss-Prot
Match: S61A2_BOVIN (Protein transport protein Sec61 subunit alpha isoform 2 OS=Bos taurus GN=SEC61A2 PE=2 SV=3)

HSP 1 Score: 446.432 bits (1147), Expect = 9.687e-125
Identity = 221/235 (94.04%), Postives = 231/235 (98.30%), Query Frame = 3 
Query:  174 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDNVRALREAFY 878
            MGIKFLEVIKPFC++LPEI KPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYW+RVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGM+IT+GQAIVYVMTGMYG+P+E+GAG+CLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSP T+NTGRGTEFEGAVIALFHLLATR D VRALREAFY
Sbjct:    1 MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFY 235
[Close]
BLAST of FC878404 vs. ExPASy Swiss-Prot
Match: S61A1_ONCMY (Protein transport protein Sec61 subunit alpha isoform A OS=Oncorhynchus mykiss GN=sec61aa PE=2 SV=3)

HSP 1 Score: 446.432 bits (1147), Expect = 9.687e-125
Identity = 221/235 (94.04%), Postives = 231/235 (98.30%), Query Frame = 3 
Query:  174 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDNVRALREAFY 878
            MGIKFLEVIKPFC++LPEI KPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYW+RVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGM+IT+GQ+IVYVMTGMYG+PSE+GAG+CLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSP TVNTGRGTEFEGA+IALFHLLATR D VRALREAFY
Sbjct:    1 MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGTEFEGAIIALFHLLATRTDKVRALREAFY 235
[Close]
BLAST of FC878404 vs. ExPASy Swiss-Prot
Match: SC61A_PAGBO (Protein transport protein Sec61 subunit alpha OS=Pagothenia borchgrevinki GN=sec61a PE=2 SV=3)

HSP 1 Score: 445.662 bits (1145), Expect = 1.652e-124
Identity = 221/235 (94.04%), Postives = 230/235 (97.87%), Query Frame = 3 
Query:  174 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDNVRALREAFY 878
            MGIKFLE IKPFC++LPEI KPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYW+RVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGM+IT+GQAIVYVMTGMYG+PSE+GAG+CLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSP TVNTGRGTEFEGA+IALFHLLATR D VRALREAFY
Sbjct:    1 MGIKFLEFIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPSEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGTEFEGAIIALFHLLATRTDKVRALREAFY 235
[Close]
BLAST of FC878404 vs. ExPASy Swiss-Prot
Match: SC61A_NOTAN (Protein transport protein Sec61 subunit alpha OS=Notothenia angustata GN=sec61a PE=2 SV=3)

HSP 1 Score: 445.662 bits (1145), Expect = 1.652e-124
Identity = 221/235 (94.04%), Postives = 230/235 (97.87%), Query Frame = 3 
Query:  174 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDNVRALREAFY 878
            MGIKFLE IKPFC++LPEI KPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYW+RVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGM+IT+GQAIVYVMTGMYG+PSE+GAG+CLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSP TVNTGRGTEFEGA+IALFHLLATR D VRALREAFY
Sbjct:    1 MGIKFLEFIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPSEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGTEFEGAIIALFHLLATRTDKVRALREAFY 235
The following BLAST results are available for this feature:
BLAST of FC878404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
SC61A_HARAN4.348e-12594.47Protein transport protein Sec61 subunit alpha OS=H... [more]
SC61A_DISMA4.348e-12594.47Protein transport protein Sec61 subunit alpha OS=D... [more]
SC61A_GADOC9.687e-12594.04Protein transport protein Sec61 subunit alpha OS=G... [more]
S61A2_ONCMY9.687e-12594.04Protein transport protein Sec61 subunit alpha isof... [more]
S61A2_MOUSE9.687e-12594.04Protein transport protein Sec61 subunit alpha isof... [more]
S61A2_HUMAN9.687e-12594.04Protein transport protein Sec61 subunit alpha isof... [more]
S61A2_BOVIN9.687e-12594.04Protein transport protein Sec61 subunit alpha isof... [more]
S61A1_ONCMY9.687e-12594.04Protein transport protein Sec61 subunit alpha isof... [more]
SC61A_PAGBO1.652e-12494.04Protein transport protein Sec61 subunit alpha OS=P... [more]
SC61A_NOTAN1.652e-12494.04Protein transport protein Sec61 subunit alpha OS=N... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA49BF02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA49BF02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878404 ID=FC878404; Name=FC878404; organism=Citrus clementina; type=EST; length=878bp
CGTGACGTGACGTTGTGGACGTGTCATTTGTAGACGGCTCGCTGGCCGCT
TTGCGCACGTTCATTTTCCTAAAAGTCCACTTGGAGTGGTACTAATGAAC
AAAAGTTGAATGGTTTCAGTCGGATTATTAATTTAATTTCATAGTTAGGA
TAGTTAAATCTCAGTAAACCAAAATGGGAATCAAATTCCTGGAAGTTATA
AAGCCTTTCTGCAGCATATTGCCAGAAATCGCGAAACCAGAAAGAAAGAT
CCAATTCAGAGAGAAAGTATTATGGACTGCCATCACTCTGTTCATTTTCT
TAGTATGCTGTCAGATTCCTCTGTTTGGTATCATGTCCTCGGACAGTGCG
GATCCCTTCTACTGGATCCGTGTGATCTTAGCCTCCAACAGAGGAACGCT
CATGGAGCTCGGTATCTCCCCCATCGTCACCTCGGGTCTGATCATGCAGC
TGTTGGCTGGTGCCAAGATCATTGAGGTCGGCGACACACCAAAAGACAGG
GCTTTGTTTAACGGCGCTCAAAAGTTGTTCGGCATGGTGATCACTGTGGG
TCAGGCCATAGTGTACGTCATGACTGGCATGTATGGAGAGCCCTCGGAGA
TCGGAGCCGGTGTCTGCCTGCTCATCATCATCCAGCTGTTTGTCGCCGGA
TTAATTGTCTTGCTACTTGACGAGCTTTTGCAAAAGGGCTACGGTCTCGG
CTCCGGTATCTCGCTGTTCATTGCGACAAATATCTGCGAGACGATCGTCT
GGAAGGCGTTCTCACCTGCCACCGTCAACACTGGTCGCGGAACAGAATTC
GAAGGAGCAGTGATAGCCCTGTTCCACCTCCTGGCGACTAGGCCGGACAA
TGTGCGCGCCCTGCGAGAGGCCTTCTAC
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