FC888647

Overview
NameFC888647
Unique NameFC888647
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length823
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13188 contig Ccv1_Contig13188:69..891. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC888647 vs. ExPASy Swiss-Prot
Match: ISY1_DICDI (Pre-mRNA-splicing factor ISY1 homolog OS=Dictyostelium discoideum GN=isy1 PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 9.922e-52
Identity = 104/201 (51.74%), Postives = 136/201 (67.66%), Query Frame = 1
Query:   73 MARNEEKAQSMLNRYIALQAXXXXXXXXXXXYLASECRDLSEADKWRQQIMREIGRKVAEIQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTKHFAKMTDLEGNIVDVPNPSGRGPGYRYFGAAKKLPGVRELFEKPPEL---RKRRTRYDIYKRIDASYYGYRDDEDGVLERVEGPAEREMRAKAVQEWRR 666
            MARNEEKA+SMLNRY+ L+            YL++EC  L +A+KWR+QI++EI R + EIQN  L E+++RDLND INKL+REKGHWERRI +LGGPN+     K+ D +G       P G G  YRY+G AK LPGV ELFEKP +     +++TR D+YK ID+ YYGYRDDEDG LE +E   E+    + V+ W++
Sbjct:    1 MARNEEKAKSMLNRYLQLKGTESKQEERRP-YLSNECDSLVDAEKWRRQILKEITRGITEIQNSALDEYKIRDLNDHINKLVREKGHWERRILQLGGPNHRALAPKLFDADGK-----EPLGTGT-YRYYGEAKNLPGVAELFEKPEQTLHGTEKKTRQDLYKYIDSDYYGYRDDEDGKLEEIEREYEKYAIEQNVENWKK 194          
BLAST of FC888647 vs. ExPASy Swiss-Prot
Match: ISY1_RAT (Pre-mRNA-splicing factor ISY1 homolog OS=Rattus norvegicus GN=Isy1 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.770e-51
Identity = 111/218 (50.92%), Postives = 142/218 (65.14%), Query Frame = 1
Query:   73 MARNEEKAQSMLNRYIALQAXXXXXXXXXXXYLASECRDLSEADKWRQQIMREIGRKVAEIQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTKHFAKMTDLEGNIVDVPNPSGRGPGYRYFGAAKKLPGVRELFEKPPELRKRRTRYDIYKRIDASYYGYRDDEDGVLERVEGPAEREMRAKAVQEWRRLDEIKKEAMKTVKSGEEASV 726
            MARN EKA + L R+   Q            +LASEC +L +A+KWR+QI+ EI +KVA+IQN GLGE R+RDLNDEINKL+REKGHWE RI ELGGP+Y K   KM D EG  V    P  R  GY+YFGAAK LPGVRELFEK P    R+TR ++ K ID  YYGY D++DGV+  +E   E+ +RA+ V++W+   E +    +  +  EE  +
Sbjct:    1 MARNAEKAMTALARFRQAQLEEGKVKERRP-FLASECTELPKAEKWRRQIIGEISKKVAQIQNAGLGEFRIRDLNDEINKLLREKGHWEVRIKELGGPDYGKVGPKMLDHEGKEV----PGNR--GYKYFGAAKDLPGVRELFEKEPLPPPRKTRAELMKAIDFEYYGYLDEDDGVIVPLEQEYEKRLRAELVEKWKAEREARLARGEKEEEEEEEEI 211          
BLAST of FC888647 vs. ExPASy Swiss-Prot
Match: ISY1_MOUSE (Pre-mRNA-splicing factor ISY1 homolog OS=Mus musculus GN=Isy1 PE=1 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 4.924e-51
Identity = 108/197 (54.82%), Postives = 136/197 (69.04%), Query Frame = 1
Query:   73 MARNEEKAQSMLNRYIALQAXXXXXXXXXXXYLASECRDLSEADKWRQQIMREIGRKVAEIQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTKHFAKMTDLEGNIVDVPNPSGRGPGYRYFGAAKKLPGVRELFEKPPELRKRRTRYDIYKRIDASYYGYRDDEDGVLERVEGPAEREMRAKAVQEWR 663
            MARN EKA + L R+   Q            +LASEC +L +A+KWR+QI+ EI +KVA+IQN GLGE R+RDLNDEINKL+REKGHWE RI ELGGP+Y K   KM D EG  V    P  R  GY+YFGAAK LPGVRELFEK P    R+TR ++ K ID  YYGY D++DGV+  +E   E+++RA+ V++W+
Sbjct:    1 MARNAEKAMTALARFRQAQLEEGKVKERRP-FLASECTELPKAEKWRRQIIGEISKKVAQIQNAGLGEFRIRDLNDEINKLLREKGHWEVRIKELGGPDYGKVGPKMLDHEGKEV----PGNR--GYKYFGAAKDLPGVRELFEKEPLPPPRKTRAELMKAIDFEYYGYLDEDDGVIVPLEQEYEKKLRAELVEKWK 190          
BLAST of FC888647 vs. ExPASy Swiss-Prot
Match: ISY1_HUMAN (Pre-mRNA-splicing factor ISY1 homolog OS=Homo sapiens GN=ISY1 PE=1 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 4.924e-51
Identity = 108/197 (54.82%), Postives = 136/197 (69.04%), Query Frame = 1
Query:   73 MARNEEKAQSMLNRYIALQAXXXXXXXXXXXYLASECRDLSEADKWRQQIMREIGRKVAEIQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTKHFAKMTDLEGNIVDVPNPSGRGPGYRYFGAAKKLPGVRELFEKPPELRKRRTRYDIYKRIDASYYGYRDDEDGVLERVEGPAEREMRAKAVQEWR 663
            MARN EKA + L R+   Q            +LASEC +L +A+KWR+QI+ EI +KVA+IQN GLGE R+RDLNDEINKL+REKGHWE RI ELGGP+Y K   KM D EG  V    P  R  GY+YFGAAK LPGVRELFEK P    R+TR ++ K ID  YYGY D++DGV+  +E   E+++RA+ V++W+
Sbjct:    1 MARNAEKAMTALARFRQAQLEEGKVKERRP-FLASECTELPKAEKWRRQIIGEISKKVAQIQNAGLGEFRIRDLNDEINKLLREKGHWEVRIKELGGPDYGKVGPKMLDHEGKEV----PGNR--GYKYFGAAKDLPGVRELFEKEPLPPPRKTRAELMKAIDFEYYGYLDEDDGVIVPLEQEYEKKLRAELVEKWK 190          
BLAST of FC888647 vs. ExPASy Swiss-Prot
Match: ISY1_USTMA (Pre-mRNA-splicing factor ISY1 OS=Ustilago maydis GN=ISY1 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.065e-37
Identity = 88/189 (46.56%), Postives = 116/189 (61.38%), Query Frame = 1
Query:   73 MARNEEKAQSMLNRYIALQAXXXXXXXXXXXY--LASECRDLSEADKWRQQIMREIGRKVAEIQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTKHFAKMTDLEGNIVDVPNPSGRGPGYRYFGAAKKLPGVRELF--EKPPELRKRRTRYDIYKRIDASYYGYRDDEDGVLERVEGPAE 627
            MARN+EKAQSML R+   QA              LAS    L E ++WR  ++REI RKV++IQ+ GL ++ +RDLNDEINKL+REKGHWE +I  LGG NY +    M   +  +V      GRG GY+YFG AK LPGV+ELF  +K  E  +   RY+ ++ +  SYYG  D++DG+L   E  AE
Sbjct:    1 MARNQEKAQSMLYRFREAQATSLGVSTKPARRPRLASSVSSLKECERWRSDVIREISRKVSKIQDFGLNDYEVRDLNDEINKLLREKGHWENQIVALGGANYKRGVPSMLGDDKGVV------GRG-GYKYFGRAKDLPGVKELFTSQKADEAGRSEERYERFRNLPPSYYGDEDEDDGLLLEQERSAE 182          
BLAST of FC888647 vs. ExPASy Swiss-Prot
Match: ISY1_NEUCR (Pre-mRNA-splicing factor isy-1 OS=Neurospora crassa GN=isy-1 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.439e-34
Identity = 87/196 (44.39%), Postives = 118/196 (60.20%), Query Frame = 1
Query:   73 MARNEEKAQSMLNRYIALQAXXXXXXXXXXXYLA---SECRDLSEADKWRQQIMREIGRKVAEIQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTKHFAKMTDLEGNIVDVPNPSGRGPGYRYFGAAKKLPGVRELFE-----KPPELRKRRTRYDIYKRIDASYYGYR-DDEDGVLERVEGPAERE 633
            MARN EKAQSML R+   QA                 +E   +   +KWR Q+++EI RKV+ IQ+  L ++++RDLNDEINKL+REK  WE +I  LGGPNY +   K+ D  G   ++P   G G GY+YFG A++LPGV+ELFE     K  + +   TR D+ K++DA+YYGY  D+ED  L   E   ER+
Sbjct:    1 MARNSEKAQSMLFRFREAQAADLGIIDAGRTRRPRSITEQDSIPACEKWRGQVLKEISRKVSRIQDPALSDYQIRDLNDEINKLMREKHMWEVQIRNLGGPNYMRSGGKVYDEAGR--EIP---GGGRGYKYFGRARELPGVKELFEAAARAKQDDEKPLETRDDLRKQVDAAYYGYAPDEEDEKLLAYEAARERQ 191          
BLAST of FC888647 vs. ExPASy Swiss-Prot
Match: ISY1_MAGGR (Pre-mRNA-splicing factor ISY1 OS=Magnaporthe grisea GN=ISY1 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.207e-34
Identity = 88/196 (44.90%), Postives = 116/196 (59.18%), Query Frame = 1
Query:   73 MARNEEKAQSMLNRYIALQAXXXXXXXXXXXY---LASECRDLSEADKWRQQIMREIGRKVAEIQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTK-HFAKMTDLEGNIVDVPNPSGRGPGYRYFGAAKKLPGVRELFE----KPPELRKRRTRYDIYKRIDASYYGYR-DDEDGVLERVEGPAERE 633
            MARN EKAQSML R+   QA                 +E   +   +KWR Q++++I RKV+ IQ   L ++++RDLNDEINKL+REK  WE +I  LGGPNYT+   AK+ D  G  +      G G GYRYFG AK+LPGV+ELFE    K  + +    R D+ K++DA+YYGY  D+ED  L   E   E+E
Sbjct:    1 MARNSEKAQSMLFRFREAQAADLGIIDAGRTRRPRAITEQDSIPACEKWRGQVLKDISRKVSRIQESSLSDYQIRDLNDEINKLMREKHMWEVQIRNLGGPNYTRAGGAKVYDEAGKEI-----GGAGRGYRYFGRAKELPGVKELFEAARAKKGDEKPLEARDDLRKQVDAAYYGYSPDEEDDELLAYEAAKEKE 191          
BLAST of FC888647 vs. ExPASy Swiss-Prot
Match: ISY1_EMENI (Pre-mRNA-splicing factor isy1 OS=Emericella nidulans GN=isy1 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.686e-32
Identity = 84/220 (38.18%), Postives = 120/220 (54.55%), Query Frame = 1
Query:   73 MARNEEKAQSMLNRYIALQAXXXXXXXXXXXY---LASECRDLSEADKWRQQIMREIGRKVAEIQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTKHFAKMTDLEGNIVDVPNPSGRGPGYRYFGAAKKLPGVRELFEKPPELRKRRTRYD-------------IYKRIDASYYGY-RDDEDGVLERVEGPAEREMRAKAVQEWRRLDEIK 681
            MARN EKAQSML R+ A QA                 +    +   +KWR Q+++EI RKV+ IQ   L +H++RDLNDEINKL+REK  WE +I  +GGPNY +   ++ D EG   ++P   G G GYRYFG A++LPGV+E+ E      +     +               K++DA+Y+GY  D+EDG L   E   E+E   K  +E    ++++
Sbjct:    1 MARNSEKAQSMLFRFRAQQAADLGIIDIGRTRRPKAITSVDSIPACEKWRGQVLKEISRKVSRIQEPSLSDHQIRDLNDEINKLMREKWAWEMQIRNMGGPNYMRGSGRVYDDEGR--EIP---GGGKGYRYFGRARELPGVKEMLEAAARRGRGPAEEEEDDGKTVGRGGDIATKKVDANYFGYGLDEEDGTLLAYEMQREKEAVEKLRKEGEDEEDVE 215          
BLAST of FC888647 vs. ExPASy Swiss-Prot
Match: ISY1_CRYNE (Pre-mRNA-splicing factor ISY1 OS=Cryptococcus neoformans GN=ISY1 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.732e-32
Identity = 83/195 (42.56%), Postives = 110/195 (56.41%), Query Frame = 1
Query:   73 MARNEEKAQSMLNRYIALQAXXXXXXXXXXX----YLASECRDLSEADKWRQQIMREIGRKVAEIQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTKHFAKMTDLEGNIVDVPNPSGRGPGYRYFGAAKKLPGVRELF----EKPPELRKRRTRYDIYKRIDASYYGYRDDEDGVLERVEGPAERE 633
            MARN EKAQSML R+   QA                +AS C  L EA++WR  I+R+I RKV++IQ+  L ++++RDLNDEIN+L REK  WE +I  LGG NY +    MTD EG   +VP       GY+YFG AK+LPGV+ELF    ++  E   R   + +++     YYG  D+ D  L   E    RE
Sbjct:    1 MARNSEKAQSMLYRFREQQAIDMGIGTRQKGDRRPRMASSCTSLREAERWRGDILRDISRKVSKIQDVALTDYQVRDLNDEINQLFREKRAWENQIINLGGANYRRAAGVMTDDEGR--EVPGTR----GYKYFGRAKELPGVKELFTRSTQQATEESARTASFQMFRHQGPDYYGDEDELDKELIDTEDVEARE 189          
BLAST of FC888647 vs. ExPASy Swiss-Prot
Match: ISY1_ASPFU (Pre-mRNA-splicing factor isy1 OS=Aspergillus fumigatus GN=isy1 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.394e-29
Identity = 73/161 (45.34%), Postives = 101/161 (62.73%), Query Frame = 1
Query:  190 LSEADKWRQQIMREIGRKVAEIQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTKHFAKMTDLEGNIVDVPNPSGRGPGYRYFGAAKKLPGVRELFE-------KPPELR-----KRRTRYDIYKRIDASYYGY-RDDEDGVLERVEGPAERE 633
            +   +KWR Q+++EI RKV+ IQ   L ++++RDLNDEINKL+REK  WE +I  LGGPNY +   ++ D EG   ++P   G G GYRYFG A++LPGV+E+FE       +PPE       K R      K++DA+Y+GY  D+EDG L   E   E+E
Sbjct:   33 IPSCEKWRGQVLKEISRKVSRIQEPSLSDYQIRDLNDEINKLMREKWAWEMQIRNLGGPNYMRGSGRVYDDEGR--EIP---GGGKGYRYFGRARELPGVKEMFEAAARRGRRPPEEEEEEEGKGRGGDIATKKVDANYFGYGLDEEDGSLLAYERQKEKE 188          
The following BLAST results are available for this feature:
BLAST of FC888647 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
ISY1_DICDI9.922e-5251.74Pre-mRNA-splicing factor ISY1 homolog OS=Dictyoste... [more]
ISY1_RAT3.770e-5150.92Pre-mRNA-splicing factor ISY1 homolog OS=Rattus no... [more]
ISY1_MOUSE4.924e-5154.82Pre-mRNA-splicing factor ISY1 homolog OS=Mus muscu... [more]
ISY1_HUMAN4.924e-5154.82Pre-mRNA-splicing factor ISY1 homolog OS=Homo sapi... [more]
ISY1_USTMA1.065e-3746.56Pre-mRNA-splicing factor ISY1 OS=Ustilago maydis G... [more]
ISY1_NEUCR1.439e-3444.39Pre-mRNA-splicing factor isy-1 OS=Neurospora crass... [more]
ISY1_MAGGR3.207e-3444.90Pre-mRNA-splicing factor ISY1 OS=Magnaporthe grise... [more]
ISY1_EMENI6.686e-3238.18Pre-mRNA-splicing factor isy1 OS=Emericella nidula... [more]
ISY1_CRYNE8.732e-3242.56Pre-mRNA-splicing factor ISY1 OS=Cryptococcus neof... [more]
ISY1_ASPFU1.394e-2945.34Pre-mRNA-splicing factor isy1 OS=Aspergillus fumig... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA73CE04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA73CE04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC888647 ID=FC888647; Name=FC888647; organism=Citrus clementina; type=EST; length=823bp
ATTAAAAATTAGGGTTTTGTTTTTTTGGGTTTATTCAGTGAAACTCGCGA
ATCCAGAGTCAGGAACAGAGCCATGGCGCGTAACGAAGAGAAAGCTCAGT
CGATGCTGAATCGGTACATCGCACTACAGGCAGAAGAGAAAAAGAAACCC
AAAGAACGGCGTCCGTATTTAGCCTCTGAGTGCCGCGATCTCAGCGAGGC
CGACAAGTGGCGGCAGCAAATCATGCGAGAAATCGGCCGCAAAGTGGCCG
AGATCCAGAACGAAGGCCTCGGCGAGCACCGGCTCCGCGACCTCAACGAC
GAGATTAACAAACTAATCCGCGAGAAGGGGCACTGGGAGAGACGGATTTT
CGAACTCGGCGGCCCCAATTACACCAAACACTTTGCTAAAATGACGGACT
TGGAAGGGAACATCGTCGACGTCCCAAACCCTAGCGGGCGTGGGCCGGGG
TACCGTTATTTTGGCGCCGCGAAGAAGCTGCCGGGTGTGAGGGAGTTGTT
CGAGAAGCCGCCGGAGTTGCGAAAGCGGAGGACTAGGTATGATATTTATA
AGAGGATTGATGCGAGTTATTATGGGTACAGGGATGATGAAGATGGGGTT
TTGGAGAGAGTTGAGGGGCCCGCGGAGAGGGAAATGCGTGCGAAGGCGGT
GCAGGAGTGGAGGAGGTTGGATGAGATAAAGAAGGAGGCGATGAAGACGG
TGAAGAGCGGGGAAGAGGCGAGCGTGATGGGGCAGGTGAACGAGATCTTG
AAGGAGGGGGAAGAGGATGTGGTTTTGGAGGAGAGGATGAGGGAAATGGA
GATTGAGAGGAAAGAGAAGGAGA
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