FC888648

Overview
NameFC888648
Unique NameFC888648
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length833
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC888648_ssr1 microsatellite FC888648_ssr1:1..28. BLAST: Citrus ESTs to Prunus persica proteins V1
FC888648_ssr95 microsatellite FC888648_ssr95:95..109. BLAST: Citrus ESTs to Prunus persica proteins V1
FC888648_ssr216 microsatellite FC888648_ssr216:216..227. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9230 contig Ccv1_Contig9230:333..1165. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC888648 vs. ExPASy Swiss-Prot
Match: KADC1_ARATH (Probable adenylate kinase 1, chloroplastic OS=Arabidopsis thaliana GN=At2g37250 PE=2 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 1.110e-74
Identity = 140/189 (74.07%), Postives = 159/189 (84.13%), Query Frame = 1
Query:  265 HVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRERLRIYNEKSR 831
            +VQWVFLGCPGVGKGTYASRLS LLGVPHIATGDLVR+ELASSGPLS +L EIV+QGKLVSDEII++LLSKRLEAGEA+GE+GFILDGFPRT+RQAEIL  VTDIDLV+NLKL EE L+ KCLGRR CS+CG  +NVA I++KGENG              C SKL+TR+DD EEVV+ RLRIYNE S+
Sbjct:   51 NVQWVFLGCPGVGKGTYASRLSTLLGVPHIATGDLVREELASSGPLSQKLSEIVNQGKLVSDEIIVDLLSKRLEAGEARGESGFILDGFPRTMRQAEILGDVTDIDLVVNLKLPEEVLVDKCLGRRTCSQCGKGFNVAHINLKGENGRPGISMDPLLPPHQCMSKLVTRADDTEEVVKARLRIYNETSQ 239          
BLAST of FC888648 vs. ExPASy Swiss-Prot
Match: KADC_SOLTU (Adenylate kinase, chloroplastic OS=Solanum tuberosum GN=ADK PE=2 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.603e-73
Identity = 142/188 (75.53%), Postives = 154/188 (81.91%), Query Frame = 1
Query:  268 VQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRERLRIYNEKSR 831
            VQWVFLGCPGVGKGTYASRLS LLGVPHIATGDLVRDEL SSGPLS QL EIV+QGKLVSDEII+NLLSKRLE+GEAKGEAGFILDGFPRTVRQAEIL  VTDIDLV+NLKL E  L+ KCLGRRICSECG N+NVA ID+ GENG                 KLITR+DD E +V+ERL IY +KS+
Sbjct:   56 VQWVFLGCPGVGKGTYASRLSTLLGVPHIATGDLVRDELKSSGPLSKQLAEIVNQGKLVSDEIILNLLSKRLESGEAKGEAGFILDGFPRTVRQAEILTEVTDIDLVVNLKLPERVLVEKCLGRRICSECGKNFNVASIDVAGENGAPRISMARLNPPFTVCFKLITRADDTEAIVKERLSIYWDKSQ 243          
BLAST of FC888648 vs. ExPASy Swiss-Prot
Match: KAD_THEAB (Adenylate kinase OS=Thermosipho africanus (strain TCF52B) GN=adk PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.766e-33
Identity = 79/189 (41.80%), Postives = 111/189 (58.73%), Query Frame = 1
Query:  277 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRERLRIYNEKS 828
            VFLG PG GKGTYA RL  +L +PHI+TGD+ R+ +AS   L  +++EI+ +G LV D++  +++  RL   + K   GFILDGFPRTV QA+ L+ +      D+D VI  ++ EE ++ +   RRICS CG  YN+  +  K +                C   L  R DDKEEVVR+R R+Y E +
Sbjct:    4 VFLGPPGAGKGTYAKRLIEMLNIPHISTGDMFREAVASKSELGKKVEEILKRGDLVPDDLTNSIVKDRLSKEDCKN--GFILDGFPRTVAQAKALDEIMRSLGKDLDYVIYFEVDEEEVVKRISNRRICSNCGKIYNLITLPPKVDG-----------KCDVCGGTLYQREDDKEEVVRKRYRVYMENT 179          
BLAST of FC888648 vs. ExPASy Swiss-Prot
Match: KAD_THEMA (Adenylate kinase OS=Thermotoga maritima GN=adk PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.162e-31
Identity = 76/191 (39.79%), Postives = 111/191 (58.12%), Query Frame = 1
Query:  277 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDEL-ASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRERLRIYNEKSR 831
            VFLG PG GKGTYA RL  + G+PHI+TGD+ RD +   +  L  ++ EI+ +G+LV DE++  ++ +RL   E   E GFILDG+PRTV QAE L+G       ++   +  ++ EE ++ +   RRIC +CG  YN+  +  K +                C  KL+ R DDKEE VR R ++Y EK++
Sbjct:    6 VFLGPPGAGKGTYAKRLQEITGIPHISTGDIFRDIVKKENDELGKKIKEIMERGELVPDELVNEVVKRRL--SEKDCERGFILDGYPRTVAQAEFLDGFLKTQNKELTAAVLFEVPEEVVVQRLTARRICPKCGRIYNLISLPPKEDE-----------LCDDCKVKLVQREDDKEETVRHRYKVYLEKTQ 183          
BLAST of FC888648 vs. ExPASy Swiss-Prot
Match: KAD_CALS8 (Adenylate kinase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=adk PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.162e-31
Identity = 74/190 (38.95%), Postives = 110/190 (57.89%), Query Frame = 1
Query:  277 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRERLRIYNEKSR 831
            + LG PG GKGT A  LS+  G+PHI+TGD++R+ + +   L  +  E + +G LV DEI+I ++  RL   + K   GF+LDGFPRT+ QAE LE V       ID V+N+++ +E +L +  GRRIC  CG +++V     K E                C  +L  R DDKEE V++RL +Y+ +++
Sbjct:    4 IILGAPGAGKGTQAEYLSSRFGIPHISTGDILRENVKNQTELGKKAKEYMDKGLLVPDEIVIEIVKNRLMQDDCKN--GFLLDGFPRTIAQAEALEKVLADLGQKIDKVLNIEVPDEKILERMSGRRICKSCGASFHVVYRPPKKEG-----------ICDICGGQLYQREDDKEETVKKRLEVYHAQTQ 180          
BLAST of FC888648 vs. ExPASy Swiss-Prot
Match: KAD_THESQ (Adenylate kinase OS=Thermotoga sp. (strain RQ2) GN=adk PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.532e-31
Identity = 75/191 (39.27%), Postives = 110/191 (57.59%), Query Frame = 1
Query:  277 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDEL-ASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRERLRIYNEKSR 831
            VFLG PG GKGTYA RL  + G+PHI+TGD+ RD +   +  L  ++ EI+ +G+LV DE++  ++ +RL   E   E GFILDG+PRTV QAE L+        ++   +  ++ EE ++ +   RRIC +CG  YN+  +  K +                C  KL+ R DDKEE VR R ++Y EK++
Sbjct:    6 VFLGPPGAGKGTYAKRLQEITGIPHISTGDIFRDIVKKENDELGKKIKEIMERGELVPDELVNEVVKRRL--SEKDCERGFILDGYPRTVAQAEFLDDFLKNQNKELTAAVLFEVPEEVVVQRLTARRICPKCGRIYNLISLPPKEDE-----------LCDDCKVKLVQREDDKEETVRHRYKVYLEKTQ 183          
BLAST of FC888648 vs. ExPASy Swiss-Prot
Match: KAD_THEP1 (Adenylate kinase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=adk PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.532e-31
Identity = 75/191 (39.27%), Postives = 110/191 (57.59%), Query Frame = 1
Query:  277 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDEL-ASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRERLRIYNEKSR 831
            VFLG PG GKGTYA RL  + G+PHI+TGD+ RD +   +  L  ++ EI+ +G+LV DE++  ++ +RL   E   E GFILDG+PRTV QAE L+        ++   +  ++ EE ++ +   RRIC +CG  YN+  +  K +                C  KL+ R DDKEE VR R ++Y EK++
Sbjct:    6 VFLGPPGAGKGTYAKRLQEITGIPHISTGDIFRDIVKKENDELGKKIKEIMERGELVPDELVNEVVKRRL--SEKDCERGFILDGYPRTVAQAEFLDDFLKNQNKELTAAVLFEVPEEVVVQRLTARRICPKCGRIYNLISLPPKEDE-----------LCDDCKVKLVQREDDKEETVRHRYKVYLEKTQ 183          
BLAST of FC888648 vs. ExPASy Swiss-Prot
Match: KAD_ARCFU (Adenylate kinase OS=Archaeoglobus fulgidus GN=adk PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.532e-31
Identity = 74/189 (39.15%), Postives = 108/189 (57.14%), Query Frame = 1
Query:  277 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGV-----TDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRERLRIYNEKS 828
            +FLG PG GKGT A R+S   G+P I+TGD++R+ +A    L  +  E + +G+LV DE++I ++ +RL+  +   E GFILDGFPRT+ QAE L+ +       ID VIN+ + EE ++ +   RR C  CG  Y++     K +N               C  +L  R DDKEE VRER R+Y + +
Sbjct:    4 IFLGPPGAGKGTQAKRVSEKYGIPQISTGDMLREAVAKGTELGKKAKEYMDKGELVPDEVVIGIVKERLQQPDC--EKGFILDGFPRTLAQAEALDEMLKELNKKIDAVINVVVPEEEVVKRITYRRTCRNCGAVYHLIYAPPKEDN-----------KCDKCGGELYQRDDDKEETVRERYRVYKQNT 179          
BLAST of FC888648 vs. ExPASy Swiss-Prot
Match: KAD_TREDE (Adenylate kinase OS=Treponema denticola GN=adk PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 9.837e-31
Identity = 69/184 (37.50%), Postives = 105/184 (57.07%), Query Frame = 1
Query:  277 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTDIDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRERLRIYNEKS 828
            +FLG PG GKGT A  +S    +PHI+TGDL R  +     L  ++  ++  G LVSD++ I L+ +RLE  + K   GFILDGFPRT+ QA+ LE +  ID VIN  + ++ ++ +  GRR+CS CG ++++  +  K E                C+  L+ R DDK E +++RL  Y  ++
Sbjct:    4 IFLGPPGAGKGTLAFEVSKSYKIPHISTGDLFRAAIKEQTDLGKKVKAVIDSGALVSDDLTIALVKERLERDDTK--KGFILDGFPRTIAQADALEDIVKIDSVINFDISDDEVIKRLSGRRVCSSCGQSFHIEFVKPKKEG-----------ICDSCSGDLMIRPDDKIEAIQKRLETYRNQT 174          
BLAST of FC888648 vs. ExPASy Swiss-Prot
Match: KAD_THEYD (Adenylate kinase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=adk PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.862e-30
Identity = 73/189 (38.62%), Postives = 104/189 (55.03%), Query Frame = 1
Query:  277 VFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSGPLSSQLDEIVSQGKLVSDEIIINLLSKRLEAGEAKGEAGFILDGFPRTVRQAEILEGVTD-----IDLVINLKLREEALLAKCLGRRICSECGGNYNVACIDIKGENGNXXXXXXXXXXXXHCASKLITRSDDKEEVVRERLRIYNEKS 828
            VFLG PG GKGT A RL    G+P I+TGDL+R  +A+  PL  +    + +G+LV D++++ ++ +RL   + K   GFILDGFPR V QAE L+ +       +DL +NL +  + L+ +  GRR C  CG  YNV     K E                C  +L  R DDKEE +R+RL +Y  ++
Sbjct:    4 VFLGAPGAGKGTQAKRLVEKYGIPQISTGDLLRAAVAAGTPLGKEAKAYMDRGELVPDKVVLGMVKERLSQNDCK--KGFILDGFPRNVAQAEALDKMLSEMNMPLDLALNLDVPFDDLMKRLTGRRTCKSCGQMYNVYYSPSKVEG-----------KCDKCGGELFQRDDDKEETIRKRLEVYRAQT 179          
The following BLAST results are available for this feature:
BLAST of FC888648 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KADC1_ARATH1.110e-7474.07Probable adenylate kinase 1, chloroplastic OS=Arab... [more]
KADC_SOLTU1.603e-7375.53Adenylate kinase, chloroplastic OS=Solanum tuberos... [more]
KAD_THEAB2.766e-3341.80Adenylate kinase OS=Thermosipho africanus (strain ... [more]
KAD_THEMA1.162e-3139.79Adenylate kinase OS=Thermotoga maritima GN=adk PE=... [more]
KAD_CALS81.162e-3138.95Adenylate kinase OS=Caldicellulosiruptor saccharol... [more]
KAD_THESQ7.532e-3139.27Adenylate kinase OS=Thermotoga sp. (strain RQ2) GN... [more]
KAD_THEP17.532e-3139.27Adenylate kinase OS=Thermotoga petrophila (strain ... [more]
KAD_ARCFU7.532e-3139.15Adenylate kinase OS=Archaeoglobus fulgidus GN=adk ... [more]
KAD_TREDE9.837e-3137.50Adenylate kinase OS=Treponema denticola GN=adk PE=... [more]
KAD_THEYD2.862e-3038.62Adenylate kinase OS=Thermodesulfovibrio yellowston... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA28BE05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA28BE05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC888648 ID=FC888648; Name=FC888648; organism=Citrus clementina; type=EST; length=833bp
TCTCTCTCTCTCTCTCTCTCTCTCTCTCACAGTGGAGAATACGACATGTC
GGTATTAAGCCGTGTTTGGAGAGCGAGAGGCTCTACGGCGGCGGCGACGA
CGACGACGACGTCGTTGCAGACACTAATATTCCTGTCTCGTGCGCTCTCA
ACTTCTTGTGAAAATACCGGAATTGACCCCAAAGCAAAAGCAGGAGCAGC
GGCGGCGCTGCCGCTTAATAATAATAATAGTAAGAAGAAGAAAGAGGGGA
AGGGCGAGGGCAAACATGTCCAGTGGGTTTTTCTTGGCTGCCCAGGCGTG
GGCAAAGGTACTTATGCTTCTAGGCTGTCGAATTTGTTGGGAGTTCCTCA
CATCGCCACCGGTGATCTCGTTCGTGACGAGCTCGCTTCCTCGGGCCCAC
TCTCCTCTCAGCTTGATGAGATTGTTAGTCAGGGAAAGTTAGTTTCTGAT
GAAATTATAATAAATTTATTGTCCAAGCGTCTTGAAGCTGGTGAAGCTAA
GGGTGAAGCTGGGTTTATTCTTGATGGTTTTCCTCGAACTGTAAGACAGG
CGGAAATATTGGAGGGAGTTACTGACATTGACTTGGTGATTAACCTAAAG
CTTCGAGAGGAGGCATTGCTTGCAAAATGCCTCGGAAGAAGAATATGTAG
TGAATGTGGAGGAAACTACAACGTTGCCTGTATTGACATCAAGGGTGAAA
ATGGGAACCCTGGAATGTACATGGGTCCACTTCTTCCCCCACCACATTGT
GCATCAAAGCTTATCACTCGTTCTGATGACAAAGAAGAAGTTGTTAGAGA
GCGACTTCGCATATATAATGAGAAGAGTCGACC
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