FC888656

Overview
NameFC888656
Unique NameFC888656
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length807
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5944 contig Ccv1_Contig5944:15..821. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC888656 vs. ExPASy Swiss-Prot
Match: PSDE_ARATH (26S proteasome non-ATPase regulatory subunit 14 OS=Arabidopsis thaliana GN=RPN11 PE=2 SV=1)

HSP 1 Score: 428.328 bits (1100), Expect = 2.383e-119
Identity = 217/247 (87.85%), Postives = 220/247 (89.07%), Query Frame = 3
Query:   66 MERLQRMFXXXXXXLGHPPPDSPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQE 806
            MERLQR+F      LGH  PDSPTLD+SEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFR INPQT+MLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYR                WTDGLTL RFD HSKTNEQTVQE
Sbjct:    1 MERLQRIFGAGGG-LGHASPDSPTLDTSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRSINPQTIMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLRRFDTHSKTNEQTVQE 246          
BLAST of FC888656 vs. ExPASy Swiss-Prot
Match: PSDE_MOUSE (26S proteasome non-ATPase regulatory subunit 14 OS=Mus musculus GN=Psmd14 PE=1 SV=2)

HSP 1 Score: 370.933 bits (951), Expect = 4.516e-102
Identity = 187/247 (75.71%), Postives = 201/247 (81.38%), Query Frame = 3
Query:   66 MERLQRMFXXXXXXLGHPPPDSPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQE 806
            M+RL R+          PP D+P +D++EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVD+YTVRV+DVFAMPQSGTGVSVEAVD VFQ  MLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEAL++RAVAVVVDPIQSVKGKVVIDAFRLIN   M+LG EPRQTTSNLGHLNKPSIQALIHGLNRHYYSI INYR                W +GLTL  +  H K NE  V+E
Sbjct:    1 MDRLLRLGGGMPGLGQGPPTDAPAVDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQSGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVKGKVVIDAFRLINANMMVLGHEPRQTTSNLGHLNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWMEGLTLQDYSEHCKHNESVVKE 247          
BLAST of FC888656 vs. ExPASy Swiss-Prot
Match: PSDE_HUMAN (26S proteasome non-ATPase regulatory subunit 14 OS=Homo sapiens GN=PSMD14 PE=1 SV=1)

HSP 1 Score: 370.933 bits (951), Expect = 4.516e-102
Identity = 187/247 (75.71%), Postives = 201/247 (81.38%), Query Frame = 3
Query:   66 MERLQRMFXXXXXXLGHPPPDSPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQE 806
            M+RL R+          PP D+P +D++EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVD+YTVRV+DVFAMPQSGTGVSVEAVD VFQ  MLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEAL++RAVAVVVDPIQSVKGKVVIDAFRLIN   M+LG EPRQTTSNLGHLNKPSIQALIHGLNRHYYSI INYR                W +GLTL  +  H K NE  V+E
Sbjct:    1 MDRLLRLGGGMPGLGQGPPTDAPAVDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQSGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVKGKVVIDAFRLINANMMVLGHEPRQTTSNLGHLNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWMEGLTLQDYSEHCKHNESVVKE 247          
BLAST of FC888656 vs. ExPASy Swiss-Prot
Match: PSDE_DROME (26S proteasome non-ATPase regulatory subunit 14 OS=Drosophila melanogaster GN=Rpn11 PE=1 SV=1)

HSP 1 Score: 369.392 bits (947), Expect = 1.314e-101
Identity = 181/230 (78.70%), Postives = 197/230 (85.65%), Query Frame = 3
Query:  117 PPPDSPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQE 806
            PP D+P +D++EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVD+YTV+V+DVFAMPQ+GTGVSVEAVD VFQ  MLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEAL++RAVAVVVDPIQSVKGKVVIDAFRLINP  ++LGQEPRQTTSNLGHL KPS+QALIHGLNRHYYSI+INYR                W DGLTL  ++ H   NE TV E
Sbjct:   16 PPTDAPVVDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVQVIDVFAMPQTGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVKGKVVIDAFRLINPNMLVLGQEPRQTTSNLGHLQKPSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKSWKDGLTLSDYNEHCSINEDTVAE 245          
BLAST of FC888656 vs. ExPASy Swiss-Prot
Match: RPN11_SCHPO (26S proteasome regulatory subunit rpn11 OS=Schizosaccharomyces pombe GN=rpn11 PE=1 SV=2)

HSP 1 Score: 346.665 bits (888), Expect = 9.120e-95
Identity = 175/247 (70.85%), Postives = 193/247 (78.14%), Query Frame = 3
Query:   66 MERLQRMFXXXXXXLGHPPPDSPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQE 806
            ME LQR+        G    D P +D+SE VYISSLALLKML+HGR G PMEVMGLMLGEFVD++TVRVVDVFAMPQSGTGVSVEAVD VFQ NM+DMLKQTGRPEMVVGWYHSHPGFGCWLS VDINTQQSFE L  RAVAVVVDPIQSVKGKVVIDAFRLINP T+M+GQEPRQTTSNLGH+NKPSIQALIHGL RHYYS+ INY+                W  GL L  F+  ++ N  ++ +
Sbjct:    1 MESLQRLLQGARMGTGMMG-DQPLVDNSECVYISSLALLKMLRHGRHGTPMEVMGLMLGEFVDDFTVRVVDVFAMPQSGTGVSVEAVDPVFQKNMMDMLKQTGRPEMVVGWYHSHPGFGCWLSSVDINTQQSFEQLTPRAVAVVVDPIQSVKGKVVIDAFRLINPSTLMMGQEPRQTTSNLGHINKPSIQALIHGLGRHYYSLRINYKKTELEEIMLLNLHKQPWAHGLLLENFNSAAEKNHASIDK 246          
BLAST of FC888656 vs. ExPASy Swiss-Prot
Match: PSDE_CAEEL (26S proteasome non-ATPase regulatory subunit 14 OS=Caenorhabditis elegans GN=rpn-11 PE=1 SV=1)

HSP 1 Score: 345.51 bits (885), Expect = 2.032e-94
Identity = 180/245 (73.47%), Postives = 191/245 (77.96%), Query Frame = 3
Query:   66 MERLQRM--FXXXXXXLGHPPPDSPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQ 794
            MER  R+          G  P DS  +D+SE VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVD+YTV V+DVFAMPQSGTGVSVEAVD VFQ  MLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEAL+ RAVAVVVDPIQSVKGKVVIDAFR INPQ+M L QEPRQTTSNLGHL KPSIQALIHGLNRHYYSI I YR                W D +++  +   SK  EQ
Sbjct:    1 MERFLRLGGLGGNLGTFGANPQDSNQVDTSETVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVIDVFAMPQSGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSDRAVAVVVDPIQSVKGKVVIDAFRTINPQSMALNQEPRQTTSNLGHLQKPSIQALIHGLNRHYYSIPIAYRTHDLEQKMLLNLNKLSWMDAVSVENY---SKCGEQ 242          
BLAST of FC888656 vs. ExPASy Swiss-Prot
Match: RPN11_ASHGO (26S proteasome regulatory subunit RPN11 OS=Ashbya gossypii GN=RPN11 PE=3 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 1.080e-87
Identity = 164/248 (66.13%), Postives = 188/248 (75.81%), Query Frame = 3
Query:   66 MERLQR-MFXXXXXXLGHPPPDSPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQE 806
            M+RLQR M       +G    + P  D+ E VYISSLALLKMLKH RAGVPMEVMGLMLG+FVDEYTV VVDVFAMPQSGTGVSVEAVD VFQ  M+DMLKQTGR +MVVGWYHSHPGFGCWLS VD++TQ+SFE LN RAVAVVVDPIQSVKGKVVIDAFRLI+P T++  QEPRQTTSN+G LNKP+IQ+LIHGLNRHYYS+ I+Y                 W  GL +H +    + N +  ++
Sbjct:    1 MDRLQRLMMSQRSNMIGAAATEMPLDDTKETVYISSLALLKMLKHSRAGVPMEVMGLMLGDFVDEYTVNVVDVFAMPQSGTGVSVEAVDDVFQAKMMDMLKQTGRDQMVVGWYHSHPGFGCWLSSVDVDTQRSFEQLNSRAVAVVVDPIQSVKGKVVIDAFRLISPATVVRNQEPRQTTSNVGLLNKPNIQSLIHGLNRHYYSLNIDYHKTSAELNMLMNLHKEQWQSGLKMHDYKEKERINLEATKK 248          
BLAST of FC888656 vs. ExPASy Swiss-Prot
Match: PSDE_DICDI (26S proteasome non-ATPase regulatory subunit 14 OS=Dictyostelium discoideum GN=psmD14 PE=3 SV=1)

HSP 1 Score: 312.383 bits (799), Expect = 1.906e-84
Identity = 153/224 (68.30%), Postives = 177/224 (79.02%), Query Frame = 3
Query:  129 SPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTV 800
            +P  D++E ++ISSLALLKML+H RAGVP+EVMGLMLGE +DEYT+RV+DVFAMPQSGT VSVEA+D VFQT MLDMLKQTGR E+V+GWYHSHPGFGCWLS VD+NTQQSFE L  RAVAVVVDP+QSV+GKVVIDAFR I         EPRQ TSNLGHL  PSIQALIHGLNR+YYSIAINYR                WT+GL + +FD H ++NE+ +
Sbjct:   22 TPLPDTAETIHISSLALLKMLQHARAGVPLEVMGLMLGELIDEYTIRVIDVFAMPQSGTSVSVEAIDPVFQTKMLDMLKQTGRDEIVIGWYHSHPGFGCWLSSVDVNTQQSFEQLQSRAVAVVVDPLQSVRGKVVIDAFRTIKTSPT---AEPRQITSNLGHLQDPSIQALIHGLNRNYYSIAINYRKNELEQKMLLNLHKKKWTEGLIVDKFDTHEQSNEKQI 242          
BLAST of FC888656 vs. ExPASy Swiss-Prot
Match: RPN11_CANGA (26S proteasome regulatory subunit RPN11 OS=Candida glabrata GN=RPN11 PE=3 SV=1)

HSP 1 Score: 311.227 bits (796), Expect = 4.246e-84
Identity = 160/234 (68.38%), Postives = 176/234 (75.21%), Query Frame = 3
Query:   66 MERLQRMFXXXXXXLGHPPPDSPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRF 767
            MERLQR+             D    D+ E VYISS+ALLKMLKHGRAGVPMEVMGLMLGEFVDEYTV VVDVFAMPQSGTGVSVEAVD VFQ  M+DMLKQTGR +MVVGWYHSHPGFGCWLS VD+NTQ+SFE LN RAVAVVVDPIQSVKGKVVIDAFRLI+   ++  QEPRQTTSN G +NK +IQALIHGLNRHYYS+ I+Y                 W  GL +  +
Sbjct:    1 MERLQRLMMNTKVGAADANKD----DTKETVYISSIALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVNVVDVFAMPQSGTGVSVEAVDDVFQARMMDMLKQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNNRAVAVVVDPIQSVKGKVVIDAFRLIDTGALINNQEPRQTTSNSGLMNKANIQALIHGLNRHYYSLNIDYHKTPAETKMLLNLHKEQWQSGLKMQDY 230          
BLAST of FC888656 vs. ExPASy Swiss-Prot
Match: RPN11_YEAST (26S proteasome regulatory subunit RPN11 OS=Saccharomyces cerevisiae GN=RPN11 PE=1 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 7.243e-84
Identity = 160/241 (66.39%), Postives = 180/241 (74.69%), Query Frame = 3
Query:   66 MERLQRMFXXXXXXLGHPPPDSPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTN 788
            MERLQR+             D    D+ E VYISS+ALLKMLKHGRAGVPMEVMGLMLGEFVD+YTV VVDVFAMPQSGTGVSVEAVD VFQ  M+DMLKQTGR +MVVGWYHSHPGFGCWLS VD+NTQ+SFE LN RAVAVVVDPIQSVKGKVVIDAFRLI+   ++   EPRQTTSN G LNK +IQALIHGLNRHYYS+ I+Y                 W  GL ++ ++   ++N
Sbjct:    1 MERLQRLMMNSKVGSADTGRD----DTKETVYISSIALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVVDVFAMPQSGTGVSVEAVDDVFQAKMMDMLKQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVDPIQSVKGKVVIDAFRLIDTGALINNLEPRQTTSNTGLLNKANIQALIHGLNRHYYSLNIDYHKTAKETKMLMNLHKEQWQSGLKMYDYEEKEESN 237          
The following BLAST results are available for this feature:
BLAST of FC888656 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
PSDE_ARATH2.383e-11987.8526S proteasome non-ATPase regulatory subunit 14 OS... [more]
PSDE_MOUSE4.516e-10275.7126S proteasome non-ATPase regulatory subunit 14 OS... [more]
PSDE_HUMAN4.516e-10275.7126S proteasome non-ATPase regulatory subunit 14 OS... [more]
PSDE_DROME1.314e-10178.7026S proteasome non-ATPase regulatory subunit 14 OS... [more]
RPN11_SCHPO9.120e-9570.8526S proteasome regulatory subunit rpn11 OS=Schizos... [more]
PSDE_CAEEL2.032e-9473.4726S proteasome non-ATPase regulatory subunit 14 OS... [more]
RPN11_ASHGO1.080e-8766.1326S proteasome regulatory subunit RPN11 OS=Ashbya ... [more]
PSDE_DICDI1.906e-8468.3026S proteasome non-ATPase regulatory subunit 14 OS... [more]
RPN11_CANGA4.246e-8468.3826S proteasome regulatory subunit RPN11 OS=Candida... [more]
RPN11_YEAST7.243e-8466.3926S proteasome regulatory subunit RPN11 OS=Sacchar... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA73CE07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA73CE07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC888656 ID=FC888656; Name=FC888656; organism=Citrus clementina; type=EST; length=807bp
AGAAATAAAAATCATATCGACCAGAAGGTTTTGAGGAATTGAAAAAAAGC
TAGAACATGTCAGGTATGGAGCGATTGCAAAGAATGTTCGCTGGTGCCGG
TGGCGCCTTGGGTCACCCGCCACCAGACTCCCCGACTCTCGATTCATCGG
AGCAGGTCTACATCTCCTCACTCGCGCTCCTCAAGATGCTCAAACACGGT
AGAGCTGGTGTGCCCATGGAGGTGATGGGTCTGATGCTGGGAGAGTTTGT
GGATGAGTACACAGTTCGGGTTGTTGATGTGTTTGCTATGCCACAAAGTG
GAACTGGTGTTAGTGTTGAAGCCGTTGATCATGTGTTCCAGACTAACATG
CTTGACATGCTCAAGCAGACTGGAAGACCAGAAATGGTTGTTGGATGGTA
TCACTCACATCCTGGATTTGGTTGCTGGCTCTCTGGTGTTGACATAAACA
CACAGCAGAGTTTTGAAGCTTTGAATCAAAGGGCTGTTGCTGTGGTTGTG
GATCCAATCCAGAGCGTGAAAGGGAAGGTAGTGATTGATGCCTTCCGCTT
GATTAATCCCCAAACCATGATGCTTGGCCAAGAACCACGGCAGACAACTT
CCAATCTTGGTCATCTTAATAAGCCATCCATCCAAGCATTGATCCATGGC
TTGAATAGACATTATTATTCTATTGCCATCAATTACAGGAAGAATGAACT
TGAAGAAAAGATGCTACTAAATCTGCACAAGAAGAAATGGACTGATGGAT
TAACACTTCATCGCTTTGATTGTCATTCCAAAACCAATGAACAGACTGTC
CAGGAGA
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