FC888658
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC888658 vs. ExPASy Swiss-Prot
Match: PPR54_ARATH (Pentatricopeptide repeat-containing protein At1g20300, mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2 SV=1) HSP 1 Score: 259.996 bits (663), Expect = 2.234e-74 Identity = 146/251 (58.17%), Postives = 178/251 (70.92%), Query Frame = 1 Query: 37 MALILSNHRLPFSLS---QQIPKAYSFFSS--LAPLNEDDDGDCVTNPNSSPDTPFLSPEETLISEKFHSLIKDHHRKXXXXXXXXXXXXXXDFTIPSLSLGFSQISTAHSISPSTVRHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVH-SPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDGLK 771 MAL+ S L +LS +PK +S ++ L+ D+ +T S P +P L+PE+T EKFHS+IKDH+RK T+ +LSL FSQI T+ +SPS VR VIEK VRHGIPL Q L+FFNW T+R ++ H SP Y+EMI+L+GKVRQFDLAWH IDLMKSRNVEI+++TF+IL+RRYVRAGLA+EAVH FNRME+YGC PDKIAFSIVIS L RKRRASEAQSFFD LK Sbjct: 1 MALLRSKLHLSRTLSFISPLLPKTFSTSATSLLSDHENDESAATITAAVSVPISPLLTPEDTQTVEKFHSIIKDHYRKNPTSPNDAILNP--SLTLHALSLDFSQIETSQ-VSPSVVRCVIEKCGSVRHGIPLHQSLAFFNWATSRDDYDHKSPHPYNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSLK 248 HSP 2 Score: 41.2022 bits (95), Expect = 2.234e-74 Identity = 17/19 (89.47%), Postives = 17/19 (89.47%), Query Frame = 3 Query: 771 KINFEPDVIVYTNLVRGWC 827 K FEPDVIVYTNLVRGWC Sbjct: 248 KDRFEPDVIVYTNLVRGWC 266
BLAST of FC888658 vs. ExPASy Swiss-Prot
Match: PP112_ARATH (Pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Arabidopsis thaliana GN=At1g71060 PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 4.330e-19 Identity = 44/140 (31.43%), Postives = 78/140 (55.71%), Query Frame = 1 Query: 355 ISPSTVRHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDGLKR 774 +SP+ + V++K + LS F W + F H+ Y+ +I GK++QF L W +D MK++ + ++ +TF+++ RRY RA EA+ AF++MEE+G + F+ ++ L + R +AQ FD +K+ Sbjct: 92 LSPALIEEVLKKLSNAG-----VLALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAKKL-LSKETFALISRRYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKK 225 HSP 2 Score: 29.261 bits (64), Expect = 4.330e-19 Identity = 12/23 (52.17%), Postives = 15/23 (65.22%), Query Frame = 3 Query: 756 F*RFKKINFEPDVIVYTNLVRGW 824 F + KK FEPD+ YT L+ GW Sbjct: 220 FDKMKKKRFEPDIKSYTILLEGW 242
BLAST of FC888658 vs. ExPASy Swiss-Prot
Match: PP129_ARATH (Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2 SV=2) HSP 1 Score: 90.5077 bits (223), Expect = 1.240e-17 Identity = 41/112 (36.61%), Postives = 68/112 (60.71%), Query Frame = 1 Query: 436 FFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDGLK 771 FF W + + HS YH MI K+RQ+ L W I+ M+ + + + V+TF I++R+Y RA EA++AFN ME+Y P+ +AF+ ++S LC+ + +AQ F+ ++ Sbjct: 120 FFQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRKKKM-LNVETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENMR 230
BLAST of FC888658 vs. ExPASy Swiss-Prot
Match: PP275_ARATH (Pentatricopeptide repeat-containing protein At3g49730 OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 4.858e-17 Identity = 47/186 (25.27%), Postives = 86/186 (46.24%), Query Frame = 1 Query: 217 EKFHSLIKDHHRKXXXXXXXXXXXXXXDFTIPSLSLGFSQISTAHSISPSTVRHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVE-ITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDGLK 771 EK + ++++HH + +P L L ++ + + P + V+ + CG + FF W T +P + HS ++ M+ + K+RQF W I+ M+ N E I + F +L+RR+ A + +AV + M +YG PD+ F ++ LC+ EA F+ ++ Sbjct: 68 EKIYRILRNHHSR-----------------VPKLELALNE--SGIDLRPGLIIRVLSR-CGDAGNLGY----RFFLWATKQPGYFHSYEVCKSMVMILSKMRQFGAVWGLIEEMRKTNPELIEPELFVVLMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMR 229 HSP 2 Score: 27.7202 bits (60), Expect = 4.858e-17 Identity = 9/21 (42.86%), Postives = 16/21 (76.19%), Query Frame = 3 Query: 762 RFKKINFEPDVIVYTNLVRGW 824 + K+ EPD++V+TNL+ G+ Sbjct: 261 QMKEAGLEPDIVVFTNLLSGY 281
BLAST of FC888658 vs. ExPASy Swiss-Prot
Match: PP447_ARATH (Putative pentatricopeptide repeat-containing protein At5g65820 OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.129e-15 Identity = 39/156 (25.00%), Postives = 75/156 (48.08%), Query Frame = 1 Query: 307 IPSLSLGFSQISTAHSISPSTVRHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVE-ITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDGLK 771 +P L L ++ + P + V+ + CG + FF W +P + HS ++Y M+ + K+RQF W I+ M+ N + I + F +LV+R+ A + +A+ + M ++G PD+ F ++ LC+ +A F+ ++ Sbjct: 97 VPKLELALNESGV--ELRPGLIERVLNR-CGDAGNLGY----RFFVWAAKQPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFASADMVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMR 245 HSP 2 Score: 26.9498 bits (58), Expect = 1.129e-15 Identity = 9/21 (42.86%), Postives = 15/21 (71.43%), Query Frame = 3 Query: 762 RFKKINFEPDVIVYTNLVRGW 824 + + FEPD++ YTNL+ G+ Sbjct: 277 QMNEAGFEPDIVDYTNLLSGY 297
BLAST of FC888658 vs. ExPASy Swiss-Prot
Match: PPR78_ARATH (Pentatricopeptide repeat-containing protein At1g52640, mitochondrial OS=Arabidopsis thaliana GN=At1g52640 PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.915e-15 Identity = 51/159 (32.08%), Postives = 78/159 (49.06%), Query Frame = 1 Query: 298 DFTIPSLSLGFSQISTAHSISPSTVRHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNV-EITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDGLK 771 D P L + ++ + +S + V V+++ + G P + FF W P+F HS + YH ++ + G +QF L W F+ + N EI+ F I+ R Y RA L +EA AFNRM E+G P ++ LC K+ + AQ FF K Sbjct: 47 DHRNPKDDLEHTLVAYSPRVSSNLVEQVLKRCKNL--GFPAHR---FFLWARRIPDFAHSLESYHILVEILGSSKQFALLWDFLIEAREYNYFEISSKVFWIVFRAYSRANLPSEACRAFNRMVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAK 200 HSP 2 Score: 23.0978 bits (48), Expect = 1.915e-15 Identity = 10/24 (41.67%), Postives = 12/24 (50.00%), Query Frame = 3 Query: 753 FF*RFKKINFEPDVIVYTNLVRGW 824 FF + K P Y+ LVRGW Sbjct: 195 FFGKAKGFGIVPSAKTYSILVRGW 218
BLAST of FC888658 vs. ExPASy Swiss-Prot
Match: PP248_ARATH (Pentatricopeptide repeat-containing protein At3g22670, mitochondrial OS=Arabidopsis thaliana GN=At3g22670 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 2.126e-13 Identity = 40/116 (34.48%), Postives = 64/116 (55.17%), Query Frame = 1 Query: 424 QVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVE---ITVDTFSILVRRYVRAGLAAEAVHAFNRMEE-YGCAPDKIAFSIVISILCRKRRASEAQSFF 759 Q FF W ++ +VHS Y+ M+++ GK R FDL W ++ M ++N E +T+DT S ++RR ++G +AV AF ME+ YG D IA + ++ L ++ A F Sbjct: 148 QAYGFFIWANSQTGYVHSGHTYNAMVDVLGKCRNFDLMWELVNEM-NKNEESKLVTLDTMSKVMRRLAKSGKYNKAVDAFLEMEKSYGVKTDTIAMNSLMDALVKENSIEHAHEVF 262 HSP 2 Score: 25.7942 bits (55), Expect = 2.126e-13 Identity = 9/20 (45.00%), Postives = 12/20 (60.00%), Query Frame = 3 Query: 768 KKINFEPDVIVYTNLVRGWC 827 K F PDV+ YT+ V +C Sbjct: 300 KVTEFTPDVVTYTSFVEAYC 319
BLAST of FC888658 vs. ExPASy Swiss-Prot
Match: PP125_ARATH (Pentatricopeptide repeat-containing protein At1g74900, mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.734e-11 Identity = 39/138 (28.26%), Postives = 67/138 (48.55%), Query Frame = 1 Query: 358 SPSTVRHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDGLK 771 +P+ V V+++ HG LQ F + E+VH + I++A ++ W I M+S + + TF+I+ RY AG +AV F M E+GC D +F+ ++ +LC+ +R +A F L+ Sbjct: 55 TPNLVNSVLKRLWN--HGPKALQFFHFLD--NHHREYVHDASSFDLAIDIAARLHLHPTVWSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALR 188
BLAST of FC888658 vs. ExPASy Swiss-Prot
Match: PP375_ARATH (Pentatricopeptide repeat-containing protein At5g11310, mitochondrial OS=Arabidopsis thaliana GN=At5g11310 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 6.588e-11 Identity = 35/117 (29.91%), Postives = 60/117 (51.28%), Query Frame = 1 Query: 433 SFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFI-DLMKSRNVE--ITVDTFSILVRRYVRAGLAAEAVHAFNRMEEY----GCAPDKIAFSIVISILCRKRRASEAQSFFD 762 S F W +P F SP L+ ++N K R+F++AW + D ++S ++ DTF +L+RRY RAG+ +A+ AF Y A + +++ LC++ EA + + Sbjct: 120 SVFKWAEMKPGFTLSPSLFDSVVNSLCKAREFEIAWSLVFDRVRSDEGSNLVSADTFIVLIRRYARAGMVQQAIRAFEFARSYEPVCKSATELRLLEVLLDALCKEGHVREASMYLE 236 The following BLAST results are available for this feature:
BLAST of FC888658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC888658 ID=FC888658; Name=FC888658; organism=Citrus clementina; type=EST; length=829bpback to top |