FC888658

Overview
NameFC888658
Unique NameFC888658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length829
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12218 contig Ccv1_Contig12218:29..855. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC888658 vs. ExPASy Swiss-Prot
Match: PPR54_ARATH (Pentatricopeptide repeat-containing protein At1g20300, mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 2.234e-74
Identity = 146/251 (58.17%), Postives = 178/251 (70.92%), Query Frame = 1
Query:   37 MALILSNHRLPFSLS---QQIPKAYSFFSS--LAPLNEDDDGDCVTNPNSSPDTPFLSPEETLISEKFHSLIKDHHRKXXXXXXXXXXXXXXDFTIPSLSLGFSQISTAHSISPSTVRHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVH-SPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDGLK 771
            MAL+ S   L  +LS     +PK +S  ++  L+    D+    +T   S P +P L+PE+T   EKFHS+IKDH+RK                T+ +LSL FSQI T+  +SPS VR VIEK   VRHGIPL Q L+FFNW T+R ++ H SP  Y+EMI+L+GKVRQFDLAWH IDLMKSRNVEI+++TF+IL+RRYVRAGLA+EAVH FNRME+YGC PDKIAFSIVIS L RKRRASEAQSFFD LK
Sbjct:    1 MALLRSKLHLSRTLSFISPLLPKTFSTSATSLLSDHENDESAATITAAVSVPISPLLTPEDTQTVEKFHSIIKDHYRKNPTSPNDAILNP--SLTLHALSLDFSQIETSQ-VSPSVVRCVIEKCGSVRHGIPLHQSLAFFNWATSRDDYDHKSPHPYNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSLK 248          

HSP 2 Score: 41.2022 bits (95), Expect = 2.234e-74
Identity = 17/19 (89.47%), Postives = 17/19 (89.47%), Query Frame = 3
Query:  771 KINFEPDVIVYTNLVRGWC 827
            K  FEPDVIVYTNLVRGWC
Sbjct:  248 KDRFEPDVIVYTNLVRGWC 266          
BLAST of FC888658 vs. ExPASy Swiss-Prot
Match: PP112_ARATH (Pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Arabidopsis thaliana GN=At1g71060 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.330e-19
Identity = 44/140 (31.43%), Postives = 78/140 (55.71%), Query Frame = 1
Query:  355 ISPSTVRHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDGLKR 774
            +SP+ +  V++K          +  LS F W   +  F H+   Y+ +I   GK++QF L W  +D MK++ + ++ +TF+++ RRY RA    EA+ AF++MEE+G   +   F+ ++  L + R   +AQ  FD +K+
Sbjct:   92 LSPALIEEVLKKLSNAG-----VLALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAKKL-LSKETFALISRRYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKK 225          

HSP 2 Score: 29.261 bits (64), Expect = 4.330e-19
Identity = 12/23 (52.17%), Postives = 15/23 (65.22%), Query Frame = 3
Query:  756 F*RFKKINFEPDVIVYTNLVRGW 824
            F + KK  FEPD+  YT L+ GW
Sbjct:  220 FDKMKKKRFEPDIKSYTILLEGW 242          
BLAST of FC888658 vs. ExPASy Swiss-Prot
Match: PP129_ARATH (Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.240e-17
Identity = 41/112 (36.61%), Postives = 68/112 (60.71%), Query Frame = 1
Query:  436 FFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDGLK 771
            FF W   +  + HS   YH MI    K+RQ+ L W  I+ M+ + + + V+TF I++R+Y RA    EA++AFN ME+Y   P+ +AF+ ++S LC+ +   +AQ  F+ ++
Sbjct:  120 FFQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRKKKM-LNVETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENMR 230          
BLAST of FC888658 vs. ExPASy Swiss-Prot
Match: PP275_ARATH (Pentatricopeptide repeat-containing protein At3g49730 OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.858e-17
Identity = 47/186 (25.27%), Postives = 86/186 (46.24%), Query Frame = 1
Query:  217 EKFHSLIKDHHRKXXXXXXXXXXXXXXDFTIPSLSLGFSQISTAHSISPSTVRHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVE-ITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDGLK 771
            EK + ++++HH +                 +P L L  ++  +   + P  +  V+ + CG    +       FF W T +P + HS ++   M+ +  K+RQF   W  I+ M+  N E I  + F +L+RR+  A +  +AV   + M +YG  PD+  F  ++  LC+     EA   F+ ++
Sbjct:   68 EKIYRILRNHHSR-----------------VPKLELALNE--SGIDLRPGLIIRVLSR-CGDAGNLGY----RFFLWATKQPGYFHSYEVCKSMVMILSKMRQFGAVWGLIEEMRKTNPELIEPELFVVLMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMR 229          

HSP 2 Score: 27.7202 bits (60), Expect = 4.858e-17
Identity = 9/21 (42.86%), Postives = 16/21 (76.19%), Query Frame = 3
Query:  762 RFKKINFEPDVIVYTNLVRGW 824
            + K+   EPD++V+TNL+ G+
Sbjct:  261 QMKEAGLEPDIVVFTNLLSGY 281          
BLAST of FC888658 vs. ExPASy Swiss-Prot
Match: PP447_ARATH (Putative pentatricopeptide repeat-containing protein At5g65820 OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.129e-15
Identity = 39/156 (25.00%), Postives = 75/156 (48.08%), Query Frame = 1
Query:  307 IPSLSLGFSQISTAHSISPSTVRHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVE-ITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDGLK 771
            +P L L  ++      + P  +  V+ + CG    +       FF W   +P + HS ++Y  M+ +  K+RQF   W  I+ M+  N + I  + F +LV+R+  A +  +A+   + M ++G  PD+  F  ++  LC+     +A   F+ ++
Sbjct:   97 VPKLELALNESGV--ELRPGLIERVLNR-CGDAGNLGY----RFFVWAAKQPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFASADMVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMR 245          

HSP 2 Score: 26.9498 bits (58), Expect = 1.129e-15
Identity = 9/21 (42.86%), Postives = 15/21 (71.43%), Query Frame = 3
Query:  762 RFKKINFEPDVIVYTNLVRGW 824
            +  +  FEPD++ YTNL+ G+
Sbjct:  277 QMNEAGFEPDIVDYTNLLSGY 297          
BLAST of FC888658 vs. ExPASy Swiss-Prot
Match: PPR78_ARATH (Pentatricopeptide repeat-containing protein At1g52640, mitochondrial OS=Arabidopsis thaliana GN=At1g52640 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.915e-15
Identity = 51/159 (32.08%), Postives = 78/159 (49.06%), Query Frame = 1
Query:  298 DFTIPSLSLGFSQISTAHSISPSTVRHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNV-EITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDGLK 771
            D   P   L  + ++ +  +S + V  V+++   +  G P  +   FF W    P+F HS + YH ++ + G  +QF L W F+   +  N  EI+   F I+ R Y RA L +EA  AFNRM E+G  P       ++  LC K+  + AQ FF   K
Sbjct:   47 DHRNPKDDLEHTLVAYSPRVSSNLVEQVLKRCKNL--GFPAHR---FFLWARRIPDFAHSLESYHILVEILGSSKQFALLWDFLIEAREYNYFEISSKVFWIVFRAYSRANLPSEACRAFNRMVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAK 200          

HSP 2 Score: 23.0978 bits (48), Expect = 1.915e-15
Identity = 10/24 (41.67%), Postives = 12/24 (50.00%), Query Frame = 3
Query:  753 FF*RFKKINFEPDVIVYTNLVRGW 824
            FF + K     P    Y+ LVRGW
Sbjct:  195 FFGKAKGFGIVPSAKTYSILVRGW 218          
BLAST of FC888658 vs. ExPASy Swiss-Prot
Match: PP248_ARATH (Pentatricopeptide repeat-containing protein At3g22670, mitochondrial OS=Arabidopsis thaliana GN=At3g22670 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.126e-13
Identity = 40/116 (34.48%), Postives = 64/116 (55.17%), Query Frame = 1
Query:  424 QVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVE---ITVDTFSILVRRYVRAGLAAEAVHAFNRMEE-YGCAPDKIAFSIVISILCRKRRASEAQSFF 759
            Q   FF W  ++  +VHS   Y+ M+++ GK R FDL W  ++ M ++N E   +T+DT S ++RR  ++G   +AV AF  ME+ YG   D IA + ++  L ++     A   F
Sbjct:  148 QAYGFFIWANSQTGYVHSGHTYNAMVDVLGKCRNFDLMWELVNEM-NKNEESKLVTLDTMSKVMRRLAKSGKYNKAVDAFLEMEKSYGVKTDTIAMNSLMDALVKENSIEHAHEVF 262          

HSP 2 Score: 25.7942 bits (55), Expect = 2.126e-13
Identity = 9/20 (45.00%), Postives = 12/20 (60.00%), Query Frame = 3
Query:  768 KKINFEPDVIVYTNLVRGWC 827
            K   F PDV+ YT+ V  +C
Sbjct:  300 KVTEFTPDVVTYTSFVEAYC 319          
BLAST of FC888658 vs. ExPASy Swiss-Prot
Match: PP125_ARATH (Pentatricopeptide repeat-containing protein At1g74900, mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.734e-11
Identity = 39/138 (28.26%), Postives = 67/138 (48.55%), Query Frame = 1
Query:  358 SPSTVRHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDGLK 771
            +P+ V  V+++     HG   LQ   F +      E+VH    +   I++A ++      W  I  M+S  +  +  TF+I+  RY  AG   +AV  F  M E+GC  D  +F+ ++ +LC+ +R  +A   F  L+
Sbjct:   55 TPNLVNSVLKRLWN--HGPKALQFFHFLD--NHHREYVHDASSFDLAIDIAARLHLHPTVWSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALR 188          
BLAST of FC888658 vs. ExPASy Swiss-Prot
Match: PP375_ARATH (Pentatricopeptide repeat-containing protein At5g11310, mitochondrial OS=Arabidopsis thaliana GN=At5g11310 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.588e-11
Identity = 35/117 (29.91%), Postives = 60/117 (51.28%), Query Frame = 1
Query:  433 SFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFI-DLMKSRNVE--ITVDTFSILVRRYVRAGLAAEAVHAFNRMEEY----GCAPDKIAFSIVISILCRKRRASEAQSFFD 762
            S F W   +P F  SP L+  ++N   K R+F++AW  + D ++S      ++ DTF +L+RRY RAG+  +A+ AF     Y      A +     +++  LC++    EA  + +
Sbjct:  120 SVFKWAEMKPGFTLSPSLFDSVVNSLCKAREFEIAWSLVFDRVRSDEGSNLVSADTFIVLIRRYARAGMVQQAIRAFEFARSYEPVCKSATELRLLEVLLDALCKEGHVREASMYLE 236          
The following BLAST results are available for this feature:
BLAST of FC888658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PPR54_ARATH2.234e-7458.17Pentatricopeptide repeat-containing protein At1g20... [more]
PP112_ARATH4.330e-1931.43Pentatricopeptide repeat-containing protein At1g71... [more]
PP129_ARATH1.240e-1736.61Pentatricopeptide repeat-containing protein At1g77... [more]
PP275_ARATH4.858e-1725.27Pentatricopeptide repeat-containing protein At3g49... [more]
PP447_ARATH1.129e-1525.00Putative pentatricopeptide repeat-containing prote... [more]
PPR78_ARATH1.915e-1532.08Pentatricopeptide repeat-containing protein At1g52... [more]
PP248_ARATH2.126e-1334.48Pentatricopeptide repeat-containing protein At3g22... [more]
PP125_ARATH1.734e-1128.26Pentatricopeptide repeat-containing protein At1g74... [more]
PP375_ARATH6.588e-1129.91Pentatricopeptide repeat-containing protein At5g11... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA95AB04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA95AB04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC888658 ID=FC888658; Name=FC888658; organism=Citrus clementina; type=EST; length=829bp
CCAAATTTGAGTGTAATGGAAATAATGAAATTTGAAATGGCCTTAATTTT
ATCCAACCACCGTCTCCCATTCTCCCTCTCTCAGCAAATCCCCAAAGCTT
ACTCATTTTTCTCTTCTTTAGCTCCTCTTAACGAAGACGACGACGGCGAC
TGTGTTACAAACCCTAATTCATCTCCCGACACTCCCTTTTTATCCCCCGA
AGAAACCCTAATCTCCGAGAAGTTTCACTCTCTAATCAAAGACCACCACC
GCAAAAACCCTAACCCTAGCTCTAATTCTAATCCATCCCTAAACCCTGAC
TTCACAATCCCCTCTCTCTCCCTCGGCTTCTCCCAAATCTCCACCGCCCA
TTCTATCTCCCCCTCCACCGTCCGCCACGTCATCGAGAAATCATGTGGGG
TCCGCCACGGCATTCCACTGCTCCAAGTCCTGTCCTTTTTCAATTGGGTC
ACGGCCCGACCCGAATTCGTCCACTCGCCCGACCTTTACCACGAAATGAT
CAATCTTGCTGGAAAGGTGAGGCAATTCGACTTGGCTTGGCATTTTATTG
ACTTGATGAAATCGAGGAATGTTGAAATTACCGTCGATACCTTCTCGATT
CTCGTTCGCCGTTACGTGAGGGCTGGACTGGCTGCGGAGGCCGTGCACGC
GTTTAACCGTATGGAGGAATATGGTTGTGCGCCTGATAAGATTGCATTTT
CAATTGTGATTAGTATTTTGTGTAGGAAACGACGGGCTAGCGAGGCGCAG
TCTTTTTTTGACGGTTTAAAAAGATAAATTTTGAGCCGGATGTTATTGTT
TATACAAATTTAGTTCGCGGGTGGTGTCG
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