FC891026

Overview
NameFC891026
Unique NameFC891026
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length753
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13672 contig Ccv1_Contig13672:804..1556. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC891026 vs. ExPASy Swiss-Prot
Match: LOX6_ORYSJ (Probable lipoxygenase 6 OS=Oryza sativa subsp. japonica GN=Os03g0179900 PE=2 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 3.038e-41
Identity = 86/170 (50.59%), Postives = 109/170 (64.12%), Query Frame = 2
Query:    5 GERKHHERIYDYAVYNDLGNPDKDKDLARPVLSGEERPYPRRCRTGRPPTKTDPLCESRIEKPHPVYVPRDETFEEIKQNTFSSGRLKAVLHNXXXXXXXXXXXXXXXFTCFSDIDKLYNSGFLLKDDDEQNGRSKLFLATVIKQFLNVGDRLFKYETPAVI-RSKFVTL 511
            G RK  +RIYDYA YNDLGNPDK K+  RP+L GE+ PYPRRCRTGRPPT T+ L ESR+EKPHP+YVPRDE FEE+KQ  FSSGRL+AVLH                F  F  ID LY  G  LK   +++   K+ L   I++     + + +Y+TP+++ + KF  L
Sbjct:  248 GVRKLSDRIYDYATYNDLGNPDKGKEFIRPILGGEKIPYPRRCRTGRPPTDTNMLAESRVEKPHPIYVPRDEAFEELKQGAFSSGRLRAVLHTLIPSLIASISAETHNFQGFHHIDNLYKEGLRLKLGLQEHLFQKIPLVQKIQE---SSEGMLRYDTPSILSKDKFAWL 414          
BLAST of FC891026 vs. ExPASy Swiss-Prot
Match: LOX6_ARATH (Lipoxygenase 6, choloroplastic OS=Arabidopsis thaliana GN=LOX6 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 9.774e-40
Identity = 85/164 (51.83%), Postives = 103/164 (62.80%), Query Frame = 2
Query:    2 KGERKHHERIYDYAVYNDLGNPDKDKDLARPVLSGEERPYPRRCRTGRPPTKTDPLCESRIEKPHPVYVPRDETFEEIKQNTFSSGRLKAVLHNXXXXXXXXXXXXXXXFTCFSDIDKLYNSGFLLKDDDEQNGRSKLFLATVIKQFLNVGDRLFKYETPAVIR 493
            KGERK HERIYDY VYNDLG+P K + + RPVL   E PYPRRCRTGRP    DP CESR ++    YVPRDE FEEIK++TF +GR KA+ HN               FTCFSDID LY S  +L   + ++     F+   +   LNV + L KY+TPAVI+
Sbjct:  245 KGERKPHERIYDYDVYNDLGDPRKTERV-RPVLGVPETPYPRRCRTGRPLVSKDPPCESRGKEKEEFYVPRDEVFEEIKRDTFRAGRFKALFHNLVPSIAAALSNLDIPFTCFSDIDNLYKSNIVLGHTEPKDTGLGGFIGGFMNGILNVTETLLKYDTPAVIK 407          
BLAST of FC891026 vs. ExPASy Swiss-Prot
Match: LOX4_ARATH (Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.411e-38
Identity = 82/163 (50.31%), Postives = 101/163 (61.96%), Query Frame = 2
Query:    2 KGERKHHERIYDYAVYNDLGNPDKDKDLARPVLSGEERPYPRRCRTGRPPTKTDPLCESRIEKPHPVYVPRDETFEEIKQNTFSSGRLKAVLHNXXXXXXXXXXXXXXXFTCFSDIDKLYNSGFLLKDDDEQNGRSKLFLATVIKQFLNVGDRLFKYETPAVI 490
            KGERK  +RIYDY VYND+GNPD  ++LARP L G E PYPRRCRTGR  T TD + E R+EKP P+YVPRDE FEE KQNTF++ RLKAVLHN               F  F +ID LY  G LLK   + +   K  L  ++       + L +Y+TP ++
Sbjct:  257 KGERKLSDRIYDYDVYNDIGNPDISRELARPTLGGREFPYPRRCRTGRSSTDTDMMSERRVEKPLPMYVPRDEQFEESKQNTFAACRLKAVLHN--LIPSLKASILAEDFANFGEIDSLYKEGLLLKLGFQDDMFKKFPLPKIVTTLQKSSEGLLRYDTPKIV 417          
BLAST of FC891026 vs. ExPASy Swiss-Prot
Match: LOX3_ARATH (Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.943e-36
Identity = 82/163 (50.31%), Postives = 103/163 (63.19%), Query Frame = 2
Query:    5 GERKHHERIYDYAVYNDLGNPDKDKDLARPVLSGEERPYPRRCRTGRPPTKTDPLCESRIEKPHPVYVPRDETFEEIKQNTFSSGRLKAVLHNXXXXXXXXXXXXXXXFTCFSDIDKLYNSGFLLKDDDEQNGRSKLFLATVIKQFLNVGDR-LFKYETPAVI 490
            G RK  +RIYD+ VYNDLGNPDK  +L+RP L G+E PYPRRCRTGR  T +D   ESR+EKP P+YVPRDE FEE KQ+TF++GRLKAVLH+               F  F +ID+LY  G LLK   + +   K  L  V+   L    + L KY+TP ++
Sbjct:  252 GVRKLSDRIYDFDVYNDLGNPDKSSELSRPKLGGKEVPYPRRCRTGRQSTVSDKDAESRVEKPLPMYVPRDEQFEESKQDTFAAGRLKAVLHH--LIPSLKASIVAEDFADFGEIDRLYKEGLLLKLGFQDDIFKKFPLPKVVVDTLQESTKGLLKYDTPKIL 412          
BLAST of FC891026 vs. ExPASy Swiss-Prot
Match: LOX5_ORYSJ (Putative lipoxygenase 5 OS=Oryza sativa subsp. japonica GN=Os04g0447100 PE=3 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 5.194e-33
Identity = 78/171 (45.61%), Postives = 97/171 (56.73%), Query Frame = 2
Query:    5 GERKHHERIYDYAVYNDLGNPDKDKDLARPVLSGEERPYPRRCRTGRPPTKTDPLCESRIEKPHPVYVPRDETFEEIKQNTFSSGRLKAVLHNXXXXXXXXXXXXXXXFTCFSDIDKLYNSGFLLKDDDEQNGRSKLF-LATVIKQFLNVGDRLFKYETPAVI-RSKFVTL 511
            GER+  +R+YDY VYNDLGNPDK    ARPVL GE+ PYPRR RTGRP T TD   ESR+E P P+YV RDE FEE K    S G +KA+LHN               F  F D+D L+  G  LK    Q    +LF     +++     + L +Y+TP +I + KF  L
Sbjct:  234 GERRITDRVYDYDVYNDLGNPDKGVASARPVLGGEQMPYPRRMRTGRPSTATDASAESRVEYPEPIYVSRDEEFEEGKNEMLSEGAIKALLHNFMPLLVSSVSPDIRDFAGFHDVDNLFKEGLRLK----QALHDQLFQKIPFVRKIQENSEGLLRYDTPDIIKKDKFAWL 400          
BLAST of FC891026 vs. ExPASy Swiss-Prot
Match: LOX21_HORVU (Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare GN=LOX2.1 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.014e-28
Identity = 74/179 (41.34%), Postives = 96/179 (53.63%), Query Frame = 2
Query:    5 GERKHHERIYDYAVYNDLGNPDKDKD-LARPVLSGEERPYPRRCRTGRPPTKTDPLCESRIEKPHPVYVPRDETFEEIKQNTFSSGRLKAVLHNXXXXXXXXXXXXXXXFTCFSDIDKLYNSGFLLKDDDEQNGRSKLFLATVIKQFLNVGD-----------RLFKYETPAV-IRSKF 502
            GERK H+RIYDY VYNDLGNPD D +   RPVL G+E PYPRRCRTGRP +K DP  E R  K H +YVPRDE F E K   F + +  + LH                F   S ID+LY+  F  +    + G+ +  +  +  + L++             R+FK+ETP +  R KF
Sbjct:  247 GERKEHDRIYDYDVYNDLGNPDDDNNPTTRPVLGGKEHPYPRRCRTGRPRSKKDPFSEERSHKEH-IYVPRDEAFTERKMGAFDTKKFMSQLH-ALTTGLKTAKHKSQSFPSLSAIDQLYDDNFRNQPVQPEGGKLRFVIDLLETELLHLFKLEGAAFLEGIRRVFKFETPEIHDRDKF 423          
BLAST of FC891026 vs. ExPASy Swiss-Prot
Match: LOX22_HORVU (Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare GN=LOX2.2 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.571e-28
Identity = 70/172 (40.70%), Postives = 93/172 (54.07%), Query Frame = 2
Query:    5 GERKHHERIYDYAVYNDLGNPDKDKDLARPVLSGEERPYPRRCRTGRPPTKTDPLCESRIEKPHPVYVPRDETFEEIKQNTFSSGRLKAVLHNXXXXXXXXXXXXXXXFTCFSDIDKLYNSGFLLKDDDEQNGRSKLFLATVIKQFLNVGD-----------RLFKYETPAV 487
            GERK H+RIYDY VYNDLG P+      RPVL G+E PYPRRCRTGRP +KTDP  E    K   +YVPRDETF E K+  F + +L + LH                F   + ID LY+  F  +    + G+ +L L  + K+ +++             R+FK+ETP +
Sbjct:  250 GERKKHDRIYDYDVYNDLGKPESK----RPVLGGKEHPYPRRCRTGRPRSKTDPSSEEESHKKGEMYVPRDETFTERKEQAFLTKQLLSQLHG-LCTGLKVNKDILPSFPTLASIDALYDDDFRNQPVQPEGGKVRLILDLLAKELVHLVKLEGAEFVEGIRRVFKFETPEI 416          
BLAST of FC891026 vs. ExPASy Swiss-Prot
Match: LOXC2_ORYSJ (Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.259e-27
Identity = 78/180 (43.33%), Postives = 101/180 (56.11%), Query Frame = 2
Query:    5 GERKHHERIYDYAVYNDLGNPDKDKDLARPVLSGEER-PYPRRCRTGRPPTKTDPLCESRIEKPHPVYVPRDETFEEIKQNTFSSGRLKAVLH---NXXXXXXXXXXXXXXXFTCFSDIDKLYNSGFLLKDDDEQNGRSKL-FLATVIKQFLNV-----GDRLFKYETPA-VIRSKFVTL 511
            G+R+  +R+YDY VYNDLGNPD + DLARPVL G ++ PYPRRCRTGRPP+K DP  E+R      VYVPRDE F E+K   F    L++VLH                   F  F  IDKL+  G       E  G  KL FL +++ + L +     GD++  ++TPA V + KF  L
Sbjct:  269 GQREADDRVYDYDVYNDLGNPDSNGDLARPVLGGSKQFPYPRRCRTGRPPSKKDPKSETR---KGNVYVPRDEEFSEVKNAQFLLKTLQSVLHAAVPAAQSALIDNLSLNLPFPSFFVIDKLFEDGV------ELPGVEKLGFLHSIVPRLLELLRDSPGDKILLFDTPANVQKDKFAWL 439          
BLAST of FC891026 vs. ExPASy Swiss-Prot
Match: LOX23_HORVU (Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.265e-27
Identity = 69/169 (40.83%), Postives = 93/169 (55.03%), Query Frame = 2
Query:    8 ERKHHERIYDYAVYNDLGNPDKDKDLARPVLSGEERPYPRRCRTGRPPTKTDPLCESRIEKPHPVYVPRDETFEEIKQNTFSSGRLKAVLHNXXXXXXXXXXXXXXXFTCFSDIDKLYNSGFLLKDDDEQNGRSKLF---LATVIKQFLNVGDRLFKYETPAVI-RSKF 502
            ERK HER+YDY  YNDLG+PDK+ D  RPVL  +E PYPRRCRTGRP T  DP  E+R     PVYVPRDE F ++K  TFS+  L++ LH                F+ F  ID LY+ G  L  D        +    +  V++   +  + + ++E P ++ R +F
Sbjct:  230 ERKFHERVYDYDTYNDLGDPDKNIDHKRPVLGTKEHPYPRRCRTGRPKTLYDPETETR---SSPVYVPRDEQFSDVKGRTFSATTLRSGLH-AILPAVAPLLNNSHGFSHFPAIDALYSDGIPLPVDGHGGNSFNVINDVIPRVVQMIEDTTEHVLRFEVPEMLERDRF 394          
BLAST of FC891026 vs. ExPASy Swiss-Prot
Match: LOXB_SOLLC (Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.488e-27
Identity = 68/167 (40.72%), Postives = 89/167 (53.29%), Query Frame = 2
Query:    5 GERKHHERIYDYAVYNDLGNPDKDKDLARPVLSG-EERPYPRRCRTGRPPTKTDPLCESRIEKPH--PVYVPRDETFEEIKQNTFSSGRLKAVLHNXXXXXXXXXXXXXXXFTCFSDIDKLYNSGFLLKDDDEQNGRSKLFLATVIKQFLNV-GDRLFKYETPAVIR 493
            G+ +  +R+YDYA YNDLG PDK ++ ARP+L G  E PYPRR RTGR PTK DP CESR   P    +YVPRDE F  +K++ F +  LK+ L                 F  F+D+  LY  G  L +       +    + ++K  L   G  L KY TP VI+
Sbjct:  188 GKLEEWDRVYDYACYNDLGEPDKGEEYARPILGGSSEYPYPRRGRTGREPTKADPNCESRNPLPMSLDIYVPRDERFGHVKKSDFLTSSLKSSLQTLLPAFKALCDNTPNEFNSFADVLNLYEGGIKLPEGPWLKAITDNISSEILKDILQTDGQGLLKYPTPQVIQ 354          
The following BLAST results are available for this feature:
BLAST of FC891026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
LOX6_ORYSJ3.038e-4150.59Probable lipoxygenase 6 OS=Oryza sativa subsp. jap... [more]
LOX6_ARATH9.774e-4051.83Lipoxygenase 6, choloroplastic OS=Arabidopsis thal... [more]
LOX4_ARATH1.411e-3850.31Lipoxygenase 4, chloroplastic OS=Arabidopsis thali... [more]
LOX3_ARATH2.943e-3650.31Lipoxygenase 3, chloroplastic OS=Arabidopsis thali... [more]
LOX5_ORYSJ5.194e-3345.61Putative lipoxygenase 5 OS=Oryza sativa subsp. jap... [more]
LOX21_HORVU1.014e-2841.34Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare... [more]
LOX22_HORVU6.571e-2840.70Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare... [more]
LOXC2_ORYSJ4.259e-2743.33Probable lipoxygenase 8, chloroplastic OS=Oryza sa... [more]
LOX23_HORVU7.265e-2740.83Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare... [more]
LOXB_SOLLC9.488e-2740.72Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 P... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA2BF04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA2BF04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC891026 ID=FC891026; Name=FC891026; organism=Citrus clementina; type=EST; length=753bp
AAAGGGCGAGAGAAAGCATCATGAGAGAATATATGATTATGCGGTCTATA
ATGATTTGGGTAATCCTGATAAAGACAAAGATCTTGCCAGGCCAGTTCTG
AGTGGTGAGGAAAGGCCTTATCCTAGGCGCTGTAGAACTGGCCGACCACC
AACCAAGACAGATCCTCTTTGTGAGAGTAGAATTGAAAAGCCCCATCCAG
TCTATGTACCTCGGGATGAAACTTTTGAGGAGATCAAGCAGAACACTTTC
TCTTCTGGGAGATTGAAAGCTGTACTCCATAATCTTATACCATCAATTGC
TGCTTCATTGTCAAGTTCGGATATCCCCTTCACATGCTTCTCCGATATTG
ATAAGTTATATAATAGTGGTTTTCTCTTAAAAGATGATGATGAACAAAAT
GGGAGGAGCAAGCTGTTTCTCGCTACTGTCATTAAACAGTTTCTGAATGT
CGGTGATAGATTATTTAAATATGAAACCCCAGCAGTTATAAGAAGTAAGT
TTGTCACCTTGTATCGTTCTTCCTAGAGATGTCAAAACAGTTGACAGCGA
TGCTGACTGAATACAGTTACATCACAATCTTGGACCAAATCTTTGTTACC
ATCATTTACTGATTCTGGGTTTATATTCTTGGGACATTCCTTTTCTTAGC
AGTTCAATTCCTTGAACACATAGCATTCATAACTTAGTCTAAAAGGAAAA
AGAAAAAGAATAAAAAATTCCTGGAATTTTCATTCTGCCTTTTATCATTA
TTG
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