FC891029

Overview
NameFC891029
Unique NameFC891029
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length837
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14023 contig Ccv1_Contig14023:69..905. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC891029 vs. ExPASy Swiss-Prot
Match: 1A112_ARATH (Probable aminotransferase ACS12 OS=Arabidopsis thaliana GN=ACS12 PE=2 SV=2)

HSP 1 Score: 255.758 bits (652), Expect = 2.269e-67
Identity = 122/221 (55.20%), Postives = 155/221 (70.14%), Query Frame = 1
Query:  175 MRLIVPLQGVVQGRGGLILGSLIPCALFYFLQFYLKRHRXXXXXXXXXXXXXLAXXXXXXXXXXXXXXXXXXXVRISARGISIAKPDDSPYYIGLNKFRDDPYDKINNPNGIIQLGLAENTSCLDLIEKWVSENLSDSIMGRDGDDLSISGITTYQPFDGMMELKVAMAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGF 837
            MRLIVPL+GV+QGRGGL +GSLIPC LFYFLQ YLKR R                                  VR+S+R + +AKP DSPYYIGL + + DPYD+I N +GIIQLGLAE+T C DL+++W+SENL +S+M  D  +  IS I  Y+PF+G++EL+VA A FMS+++G  VSFDPS +V+TAG TPA+E+L FCLADHGNA L+P+PYYPGF
Sbjct:    1 MRLIVPLRGVIQGRGGLFVGSLIPCCLFYFLQLYLKRRRPPPSDPTDLPRTF-------SRTNLFSRGNSIGRVRVSSRAVPVAKPSDSPYYIGLERVKTDPYDRITNTDGIIQLGLAESTLCFDLLQRWMSENLMESMMQSDDGEFDISSIAMYKPFEGLLELRVAFADFMSRIMGGNVSFDPSNMVITAGGTPAIEVLAFCLADHGNAFLIPTPYYPGF 214          
BLAST of FC891029 vs. ExPASy Swiss-Prot
Match: 1A110_ARATH (Probable aminotransferase ACS10 OS=Arabidopsis thaliana GN=ACS10 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.874e-37
Identity = 78/149 (52.35%), Postives = 107/149 (71.81%), Query Frame = 1
Query:  394 VRISARGISIAKP-DDSPYYIGLNKFRDDPYDKINNPNGIIQLGLAENTSCLDLIEKWVSENLSDSIMGRDGDDLSISGITTYQPFDGMMELKVAMAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGF 837
            V +S R   + K  D SPYY+G  +  DDPYD++ NP+G+IQLGLA+N      ++ WV EN  ++I     D LSISGI +Y+P DG++ELK+A+AGFM++    +V+FDPSQ+VLT+GA+ A+EIL FCLAD GNA LVP+P  PG+
Sbjct:  130 VSVSGRVNCVLKGGDSSPYYVGQKRVEDDPYDELGNPDGVIQLGLAQNNKLS--LDDWVLENPKEAI----SDGLSISGIASYEPSDGLLELKMAVAGFMTEATKNSVTFDPSQLVLTSGASSAIEILSFCLADSGNAFLVPTPCSPGY 272          

HSP 2 Score: 76.2554 bits (186), Expect = 2.464e-13
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 1
Query:  169 TAMRLIVPLQGVVQGRGGLILGSLIPCALFYFLQFYLKRHR 291
            T MR+IVPLQGVVQGRGGL LGS+IPCA FYFLQFYLKR+R
Sbjct:   29 TGMRVIVPLQGVVQGRGGLFLGSVIPCAFFYFLQFYLKRNR 69          
BLAST of FC891029 vs. ExPASy Swiss-Prot
Match: 1A19_ARATH (1-aminocyclopropane-1-carboxylate synthase 9 OS=Arabidopsis thaliana GN=ACS9 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.320e-34
Identity = 69/147 (46.94%), Postives = 100/147 (68.03%), Query Frame = 1
Query:  397 RISARGISIAKPDDSPYYIGLNKFRDDPYDKINNPNGIIQLGLAENTSCLDLIEKWVSENLSDSIMGRDGDDLSISGITTYQPFDGMMELKVAMAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGF 837
            ++S +  S A   DS Y++G  ++  +PYD+I NPNGIIQ+GLAEN  C DLIE W+++N   + + +DG  +    +  +Q + G+ E K A+A FM ++ G  V+FDPS+IVL AG+T A E L FCLA+ G+A L+P+PYYPGF
Sbjct:    3 QLSRKVTSNAHGQDSSYFLGWEEYEKNPYDEIKNPNGIIQMGLAENQLCFDLIETWLAKNPDAAGLKKDGQSI-FKELALFQDYHGLPEFKKALAEFMEEIRGNRVTFDPSKIVLAAGSTSANETLMFCLAEPGDAFLLPTPYYPGF 148          
BLAST of FC891029 vs. ExPASy Swiss-Prot
Match: 1A15_ARATH (1-aminocyclopropane-1-carboxylate synthase 5 OS=Arabidopsis thaliana GN=ACS5 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.257e-33
Identity = 68/147 (46.26%), Postives = 98/147 (66.67%), Query Frame = 1
Query:  397 RISARGISIAKPDDSPYYIGLNKFRDDPYDKINNPNGIIQLGLAENTSCLDLIEKWVSENLSDSIMGRDGDDLSISGITTYQPFDGMMELKVAMAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGF 837
            ++S +  S     DS Y++G  ++  +PYD+I NPNG+IQ+GLAEN  C DLIE W+++N   + + R+G  +    +  +Q + GM E K AMA FM ++ G  V+FDP +IVL AG+T A E L FCLA+ G+A L+P+PYYPGF
Sbjct:    3 QLSTKVTSNGHGQDSSYFLGWEEYEKNPYDEIKNPNGMIQMGLAENQLCFDLIESWLTKNPDAASLKRNGQSI-FRELALFQDYHGMPEFKKAMAEFMEEIRGNRVTFDPKKIVLAAGSTSANETLMFCLAEPGDAFLLPTPYYPGF 148          
BLAST of FC891029 vs. ExPASy Swiss-Prot
Match: 1A18_ARATH (1-aminocyclopropane-1-carboxylate synthase 8 OS=Arabidopsis thaliana GN=ACS8 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.896e-32
Identity = 67/134 (50.00%), Postives = 92/134 (68.66%), Query Frame = 1
Query:  436 DSPYYIGLNKFRDDPYDKINNPNGIIQLGLAENTSCLDLIEKWVSENLSDSIMGRDGDDLSISGITTYQPFDGMMELKVAMAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGF 837
            DS Y+ G  ++  +PYD+I NP+GIIQ+GLAEN    DLIE W+++N   +   R+G  +    +  +Q + G+   K AMA FMS+  G  VSF+P+++VLTAGATPA E L FCLAD G+A L+P+PYYPGF
Sbjct:   16 DSSYFWGWEEYEKNPYDEIKNPDGIIQMGLAENQLSFDLIESWLAKNPDAANFQREGQSI-FRELALFQDYHGLPSFKNAMADFMSENRGNRVSFNPNKLVLTAGATPANETLMFCLADPGDAFLLPTPYYPGF 148          
BLAST of FC891029 vs. ExPASy Swiss-Prot
Match: 1A11_ORYSJ (1-aminocyclopropane-1-carboxylate synthase 1 OS=Oryza sativa subsp. japonica GN=ACC1 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.176e-31
Identity = 66/135 (48.89%), Postives = 92/135 (68.15%), Query Frame = 1
Query:  436 DSPYYIGLNKFRDDPYDKINNPNGIIQLGLAENTSCLDLIEKWVSENLSDSIMGRDGDDLSI-SGITTYQPFDGMMELKVAMAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGF 837
            DS Y++G  ++  +P+D ++NP+GIIQ+GLAEN    DL+E+W+ +N     + R+G   S+   +  +Q + G+   K A+A FMS+  G  V FDPS IVLTAGAT A E L FCLADHG+A L+P+PYYPGF
Sbjct:   26 DSSYFLGWQEYEKNPFDPVSNPSGIIQMGLAENQLSFDLLEEWLEKNPHALGLRREGGGASVFRELALFQDYHGLPAFKNALARFMSEQRGYKVVFDPSNIVLTAGATSANEALMFCLADHGDAFLIPTPYYPGF 160          
BLAST of FC891029 vs. ExPASy Swiss-Prot
Match: 1A11_ORYSI (1-aminocyclopropane-1-carboxylate synthase 1 OS=Oryza sativa subsp. indica GN=ACC1 PE=2 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 1.176e-31
Identity = 66/135 (48.89%), Postives = 92/135 (68.15%), Query Frame = 1
Query:  436 DSPYYIGLNKFRDDPYDKINNPNGIIQLGLAENTSCLDLIEKWVSENLSDSIMGRDGDDLSI-SGITTYQPFDGMMELKVAMAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGF 837
            DS Y++G  ++  +P+D ++NP+GIIQ+GLAEN    DL+E+W+ +N     + R+G   S+   +  +Q + G+   K A+A FMS+  G  V FDPS IVLTAGAT A E L FCLADHG+A L+P+PYYPGF
Sbjct:   26 DSSYFLGWQEYEKNPFDPVSNPSGIIQMGLAENQLSFDLLEEWLEKNPHALGLRREGGGASVFRELALFQDYHGLPAFKNALARFMSEQRGYKVVFDPSNIVLTAGATSANEALMFCLADHGDAFLIPTPYYPGF 160          
BLAST of FC891029 vs. ExPASy Swiss-Prot
Match: 1A1C_MALDO (1-aminocyclopropane-1-carboxylate synthase OS=Malus domestica GN=ACS-1 PE=1 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 2.621e-31
Identity = 60/134 (44.78%), Postives = 92/134 (68.66%), Query Frame = 1
Query:  436 DSPYYIGLNKFRDDPYDKINNPNGIIQLGLAENTSCLDLIEKWVSENLSDSIMGRDGDDLSISGITTYQPFDGMMELKVAMAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGF 837
            DS Y++G  ++  +PY +++N NGIIQ+GLAEN  C DL+E W+++N   +   ++G+ +  + +  +Q + G+   K AM  FM+++ G  V+FDP+ +VLTAGAT A E   FCLAD G A+L+P+PYYPGF
Sbjct:   16 DSSYFLGWQEYEKNPYHEVHNTNGIIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESI-FAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGF 148          
BLAST of FC891029 vs. ExPASy Swiss-Prot
Match: 1A14_ARATH (1-aminocyclopropane-1-carboxylate synthase 4 OS=Arabidopsis thaliana GN=ACS4 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.838e-31
Identity = 66/148 (44.59%), Postives = 92/148 (62.16%), Query Frame = 1
Query:  394 VRISARGISIAKPDDSPYYIGLNKFRDDPYDKINNPNGIIQLGLAENTSCLDLIEKWVSENLSDSIMGRDGDDLSISGITTYQPFDGMMELKVAMAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGF 837
            V++S +    +    S Y++G  ++  +PYD   NP GIIQ+GLAEN  C DL+E W+++N   +   RDG  +    +  +Q + G+   K A A FMS+  G  VSFD + +VLTAGAT A E L FCLAD G+A L+P+PYYPGF
Sbjct:    2 VQLSRKATCNSHGQVSSYFLGWEEYEKNPYDVTKNPQGIIQMGLAENQLCFDLLESWLAQNTDAACFKRDGQSV-FRELALFQDYHGLSSFKNAFADFMSENRGNRVSFDSNNLVLTAGATSANETLMFCLADPGDAFLLPTPYYPGF 148          
BLAST of FC891029 vs. ExPASy Swiss-Prot
Match: 1A1C_TOBAC (1-aminocyclopropane-1-carboxylate synthase OS=Nicotiana tabacum GN=ACS1 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.301e-30
Identity = 63/135 (46.67%), Postives = 88/135 (65.19%), Query Frame = 1
Query:  433 DDSPYYIGLNKFRDDPYDKINNPNGIIQLGLAENTSCLDLIEKWVSENLSDSIMGRDGDDLSISGITTYQPFDGMMELKVAMAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGF 837
            ++SPY+ G   + +DP+  + NPNG+IQ+GLAEN  C DLIE+W+  N + SI   +G   S   I  +Q + G+ E + A+A FM +  G  V+FDP ++V+  GAT A E + FCLAD G+A LVPSPYYP F
Sbjct:   23 ENSPYFDGWKAYDNDPFHPLKNPNGVIQMGLAENQLCFDLIEEWIKRNPNASICTTEGIK-SFRAIANFQDYHGLPEFRSAIAKFMEKTRGGRVTFDPERVVMAGGATGANETIIFCLADTGDAFLVPSPYYPAF 156          
The following BLAST results are available for this feature:
BLAST of FC891029 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
1A112_ARATH2.269e-6755.20Probable aminotransferase ACS12 OS=Arabidopsis tha... [more]
1A110_ARATH1.874e-3752.35Probable aminotransferase ACS10 OS=Arabidopsis tha... [more]
1A19_ARATH4.320e-3446.941-aminocyclopropane-1-carboxylate synthase 9 OS=Ar... [more]
1A15_ARATH1.257e-3346.261-aminocyclopropane-1-carboxylate synthase 5 OS=Ar... [more]
1A18_ARATH6.896e-3250.001-aminocyclopropane-1-carboxylate synthase 8 OS=Ar... [more]
1A11_ORYSJ1.176e-3148.891-aminocyclopropane-1-carboxylate synthase 1 OS=Or... [more]
1A11_ORYSI1.176e-3148.891-aminocyclopropane-1-carboxylate synthase 1 OS=Or... [more]
1A1C_MALDO2.621e-3144.781-aminocyclopropane-1-carboxylate synthase OS=Malu... [more]
1A14_ARATH5.838e-3144.591-aminocyclopropane-1-carboxylate synthase 4 OS=Ar... [more]
1A1C_TOBAC1.301e-3046.671-aminocyclopropane-1-carboxylate synthase OS=Nico... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA75BF03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA75BF03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC891029 ID=FC891029; Name=FC891029; organism=Citrus clementina; type=EST; length=837bp
AAAAATCTGAATCGCCAACAGCCACCCTATCTCATTCATGTCATTCTTCT
CTCTACACGGAGGGCGGATCACCCGAGGTGCGTCAAGTTCAATCGGGCCG
GACCAACCCAACACATGACCCAATCCCATCGGACCACGGAACCCGAGCAC
CGCAAGCCGACCACTGCCACAGCCATGAGACTGATAGTGCCCTTACAAGG
CGTAGTCCAAGGCAGGGGCGGCCTTATCTTGGGCTCTCTAATCCCCTGCG
CGCTCTTCTACTTCCTCCAGTTTTACTTGAAACGCCACCGTTCTCCAAAC
CCTCCCTCCCCCTCCACCTCATCCTCCAACCTCGCTGGACTCCCTAGAAC
TTCCTCGCGGTCTACTTTGTCGTCGCGTGGATCGCTCGGTCCGGTTCGGA
TATCGGCCCGGGGGATCTCGATTGCGAAGCCGGACGATTCTCCGTATTAT
ATCGGGTTGAACAAGTTTCGGGACGATCCCTATGATAAAATCAATAATCC
GAATGGGATTATTCAGCTTGGATTGGCCGAGAACACATCGTGTTTGGATT
TGATTGAGAAATGGGTGTCGGAGAACTTGAGTGATTCTATAATGGGACGG
GACGGTGATGATTTGAGTATCAGTGGGATTACGACCTACCAGCCGTTTGA
TGGAATGATGGAGCTTAAAGTGGCTATGGCGGGTTTCATGTCTCAGGTCT
TGGGGCAAGCTGTCTCATTTGACCCCTCTCAGATAGTATTAACTGCTGGT
GCAACTCCTGCGGTTGAGATACTATGCTTCTGCTTGGCAGATCATGGGAA
CGCATTGCTTGTTCCCTCGCCTTATTATCCTGGTTTT
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