FC891030

Overview
NameFC891030
Unique NameFC891030
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length788
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11389 contig Ccv1_Contig11389:146..932. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC891030 vs. ExPASy Swiss-Prot
Match: ELC_ARATH (Protein ELC OS=Arabidopsis thaliana GN=ELC PE=1 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 6.308e-77
Identity = 144/245 (58.78%), Postives = 167/245 (68.16%), Query Frame = 3
Query:    3 QFLSSVLSQRGPSALPYAEDTKWLIRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPLYXXXXXXXXXXXXXXXXXXXXXXXXAVMSNYGXXXXXXXXXXXXXXXXXXXYGG--------RXXXXXXTEDQTEVFKRNAVNKLVEMVHADITGMRKS 713
            QFLSS LSQRGPS++PY E  KWLIRQHLL LIS++PSL+PKTA+F HNDGRSVNLLQADGT+PMPF GVTYNIPVIIWL+ESYPRHPPCVYVNPT DMIIKRPH HVTPSGLVS+PYLQNW+YPSSNLVDLV +LSA F+R+PPLY                          + +                     YGG               ++D  EVFKRNA+NK+VEMVH+D+  MR++
Sbjct:   13 QFLSSALSQRGPSSVPYEESNKWLIRQHLLNLISSYPSLEPKTASFMHNDGRSVNLLQADGTIPMPFHGVTYNIPVIIWLLESYPRHPPCVYVNPTADMIIKRPHAHVTPSGLVSLPYLQNWVYPSSNLVDLVSDLSAAFARDPPLY------------SRRRPQPPPPSPPTVYDSSLSRPPSADQSLPRPFPPSPYGGGVSRVQVQHVHHQQQSDDAAEVFKRNAINKMVEMVHSDLVSMRRA 245          
BLAST of FC891030 vs. ExPASy Swiss-Prot
Match: ELCL_ARATH (Protein ELC-like OS=Arabidopsis thaliana GN=ELCL PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 3.827e-74
Identity = 143/237 (60.34%), Postives = 166/237 (70.04%), Query Frame = 3
Query:    3 QFLSSVLSQRGPSALPYAEDTKWLIRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPLYXXXXXXXXXXXXXXXXXXXXXXXXAVMSNYGXXXXXXXXXXXXXXXXXXXYGGRXXXXXXTEDQTEVFKRNAVNKLVEMVHADITGMRKS 713
            QFLSS L+QRGPSALPYAE+TK LIRQHLL LIS++ SLDPKTATFTHNDGRSV LLQADGT+PMPFQGV+YNIPV+IWL+ESYP++PPCVYVNPTRDMIIKRPH +V+PSGLVS+PYLQNWIYPSSNLVDL   LSA FSR+PPLY                        ++ S Y                       R      T+D  EV+K+NA+N++VEMVH DI  MR +
Sbjct:   13 QFLSSALTQRGPSALPYAENTKSLIRQHLLNLISSYTSLDPKTATFTHNDGRSVILLQADGTIPMPFQGVSYNIPVVIWLLESYPQYPPCVYVNPTRDMIIKRPHSNVSPSGLVSLPYLQNWIYPSSNLVDLASHLSAAFSRDPPLY-------------SQRRPPPQPSPSIGSGY----------------------SRPLPPRQTDDAAEVYKKNAINRIVEMVHGDIVLMRSA 214          
BLAST of FC891030 vs. ExPASy Swiss-Prot
Match: UEVLD_XENTR (Ubiquitin-conjugating enzyme E2 variant 3 OS=Xenopus tropicalis GN=uevld PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.603e-22
Identity = 51/121 (42.15%), Postives = 72/121 (59.50%), Query Frame = 3
Query:   81 QHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPLY 443
            + L  L  TFPS      T+T  DG   +LL   GTVPM  QG TYNIP+ +W+++S+P  PP  ++ P+ +M I R   H+   G + +PYLQNW +P S +  L+RE++  F  E PLY
Sbjct:   23 EELKDLNRTFPSFIFSMETYTFRDGSQKDLLNLTGTVPMKHQGTTYNIPICLWILDSHPFAPPLCFLKPSGNMGI-RVGRHIDAQGRIYLPYLQNWSHPKSTVTGLIREMAVKFEEELPLY 142          
BLAST of FC891030 vs. ExPASy Swiss-Prot
Match: TS101_HUMAN (Tumor susceptibility gene 101 protein OS=Homo sapiens GN=TSG101 PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 4.440e-22
Identity = 45/118 (38.14%), Postives = 74/118 (62.71%), Query Frame = 3
Query:   90 LTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPLY 443
            + +I+ +  L P   ++  NDG S  L+   GT+P+P++G TYNIP+ +WL+++YP +PP  +V PT  M IK    HV  +G + +PYL  W +P S+L+ L++ +   F  EPP++
Sbjct:   26 VNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIK-TGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPPVF 142          
BLAST of FC891030 vs. ExPASy Swiss-Prot
Match: TS101_RAT (Tumor susceptibility gene 101 protein OS=Rattus norvegicus GN=Tsg101 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.428e-20
Identity = 43/118 (36.44%), Postives = 73/118 (61.86%), Query Frame = 3
Query:   90 LTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPLY 443
            + +I+ +  L P   ++  NDG S  L+   GT+P+ ++G  YNIP+ +WL+++YP +PP  +V PT  M IK    HV  +G + +PYL +W +P S L++L++ +   F  EPP++
Sbjct:   26 VNVIAMYKDLKPVLDSYVFNDGSSRELVNLTGTIPVRYRGNIYNIPICLWLLDTYPYNPPICFVKPTSSMTIK-TGKHVDANGKIYLPYLHDWKHPRSELLELIQIMIVIFGEEPPVF 142          
BLAST of FC891030 vs. ExPASy Swiss-Prot
Match: TS101_MOUSE (Tumor susceptibility gene 101 protein OS=Mus musculus GN=Tsg101 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.428e-20
Identity = 43/118 (36.44%), Postives = 73/118 (61.86%), Query Frame = 3
Query:   90 LTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPLY 443
            + +I+ +  L P   ++  NDG S  L+   GT+P+ ++G  YNIP+ +WL+++YP +PP  +V PT  M IK    HV  +G + +PYL +W +P S L++L++ +   F  EPP++
Sbjct:   26 VNVIAMYKDLKPVLDSYVFNDGSSRELVNLTGTIPVRYRGNIYNIPICLWLLDTYPYNPPICFVKPTSSMTIK-TGKHVDANGKIYLPYLHDWKHPRSELLELIQIMIVIFGEEPPVF 142          
BLAST of FC891030 vs. ExPASy Swiss-Prot
Match: UEVLD_MOUSE (Ubiquitin-conjugating enzyme E2 variant 3 OS=Mus musculus GN=Uevld PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.518e-19
Identity = 46/121 (38.02%), Postives = 69/121 (57.02%), Query Frame = 3
Query:   81 QHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPLY 443
            + L  +  +FP       T+   D    +LL   GT+P+ +QG TYNIP+  W+++S+P  PP  ++ PT +M I     HV   G + +PYLQNW +P S +V L++E+ A F  E PLY
Sbjct:   23 EELKNVSVSFPHFRYSVDTYVFKDTSQKDLLNFTGTIPVMYQGKTYNIPIRFWILDSHPFAPPICFLKPTANMEIS-VGKHVDAKGRIYLPYLQNWSHPKSAIVGLIKEMIAKFQEELPLY 142          
BLAST of FC891030 vs. ExPASy Swiss-Prot
Match: UEVLD_DANRE (Ubiquitin-conjugating enzyme E2 variant 3 OS=Danio rerio GN=uevld PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.001e-19
Identity = 43/120 (35.83%), Postives = 70/120 (58.33%), Query Frame = 3
Query:   81 QHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPL 440
            + L  +   +P +     T+T +D    +LL+  G +P+ +QG +YNIP+++WL++S+P  PP  Y+ PT  M+I R   HV   G + +P L NW +P S++  L+ E+   F  EPPL
Sbjct:   23 EELQKVYRVYPDMKIMAGTYTSSDSLQKDLLKLVGNIPVVYQGRSYNIPILLWLLDSFPFTPPICYLRPTSSMVI-REGKHVDSKGRIHLPALHNWDHPKSSVNALLAEMIGKFEEEPPL 141          
BLAST of FC891030 vs. ExPASy Swiss-Prot
Match: UEVLD_HUMAN (Ubiquitin-conjugating enzyme E2 variant 3 OS=Homo sapiens GN=UEVLD PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.280e-18
Identity = 44/112 (39.29%), Postives = 65/112 (58.04%), Query Frame = 3
Query:  108 FPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPLY 443
            FP       T+   D    +LL   GT+P+ +QG TYNIP+  W+++S+P  PP  ++ PT +M I     HV   G + +PYLQNW +P S +V L++E+ A F  E P+Y
Sbjct:   32 FPHFKYSMDTYVFKDSSQKDLLNFTGTIPVMYQGNTYNIPIRFWILDSHPFAPPICFLKPTANMGI-LVGKHVDAQGRIYLPYLQNWSHPKSVIVGLIKEMIAKFQEELPMY 142          
BLAST of FC891030 vs. ExPASy Swiss-Prot
Match: TS101_DICDI (ESCRT-I complex subunit tsg101 OS=Dictyostelium discoideum GN=tsg101 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.096e-12
Identity = 36/98 (36.73%), Postives = 56/98 (57.14%), Query Frame = 3
Query:   75 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNW 368
            I + L      FP+L P    F  N    VNL+   GT+P+ F+G+ Y +P+I+W+  +YP+  P + ++PT +M I + H HV   GLV  PY+ +W
Sbjct:   47 ISKDLKETFHLFPNLSP----FYENIPNRVNLICIKGTIPICFKGINYYLPIIVWVPLNYPQEFPTMVLDPTPEMRIVKNHHHVNLQGLVYHPYISSW 140          
The following BLAST results are available for this feature:
BLAST of FC891030 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
ELC_ARATH6.308e-7758.78Protein ELC OS=Arabidopsis thaliana GN=ELC PE=1 SV... [more]
ELCL_ARATH3.827e-7460.34Protein ELC-like OS=Arabidopsis thaliana GN=ELCL P... [more]
UEVLD_XENTR2.603e-2242.15Ubiquitin-conjugating enzyme E2 variant 3 OS=Xenop... [more]
TS101_HUMAN4.440e-2238.14Tumor susceptibility gene 101 protein OS=Homo sapi... [more]
TS101_RAT1.428e-2036.44Tumor susceptibility gene 101 protein OS=Rattus no... [more]
TS101_MOUSE1.428e-2036.44Tumor susceptibility gene 101 protein OS=Mus muscu... [more]
UEVLD_MOUSE3.518e-1938.02Ubiquitin-conjugating enzyme E2 variant 3 OS=Mus m... [more]
UEVLD_DANRE6.001e-1935.83Ubiquitin-conjugating enzyme E2 variant 3 OS=Danio... [more]
UEVLD_HUMAN2.280e-1839.29Ubiquitin-conjugating enzyme E2 variant 3 OS=Homo ... [more]
TS101_DICDI1.096e-1236.73ESCRT-I complex subunit tsg101 OS=Dictyostelium di... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA2BF05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA2BF05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC891030 ID=FC891030; Name=FC891030; organism=Citrus clementina; type=EST; length=788bp
AGCAATTCCTCTCATCGGTCCTCTCCCAGCGGGGCCCATCCGCTCTTCCG
TACGCCGAAGACACCAAATGGCTAATCCGCCAGCACCTCCTAACCCTAAT
CTCCACTTTCCCTTCGCTCGACCCGAAAACGGCGACGTTCACACACAACG
ACGGCCGATCCGTCAACCTCCTCCAGGCCGACGGCACCGTCCCCATGCCT
TTCCAAGGCGTCACTTACAACATCCCCGTCATCATCTGGCTCATGGAGTC
TTACCCCCGCCACCCGCCTTGCGTCTACGTGAACCCCACGCGCGACATGA
TCATCAAACGCCCCCACCCCCACGTCACCCCCTCAGGCCTCGTGTCGATC
CCCTATTTGCAGAATTGGATCTACCCGAGCTCTAACCTCGTCGATCTCGT
GCGCGAGTTGAGCGCGTGCTTCTCACGTGAGCCGCCTCTTTACTCGCAGC
GCCGCCCCAGCCCCAGCCCGAACTCCAGTCCTAACCCTAACCCTAGCCAT
AACCAAAGCAATCCCGCCGTTATGTCGAATTATGGACCCTCGCCCTCACC
ACAGGCGAGACCTCAGCCAGCGCGACCGTTTCCTCCGTCTCCGTACGGTG
GCCGGCCTCAGCCTCAGCCGCAGACGGAGGATCAGACGGAGGTTTTTAAA
CGGAACGCTGTGAACAAGTTGGTCGAAATGGTGCACGCAGATATTACGGG
GATGAGGAAAAGCGCGTGAGGTGGAGGTGGAAGGCTTGTTCAGCACGCAA
GCTTTGTTAAGGCGCAGGGAAGAGGAAATCGATAGAGG
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