FC899093
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC899093 vs. ExPASy Swiss-Prot
Match: DHSA_SCHPO (Probable succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Schizosaccharomyces pombe GN=sdh1 PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 3.394e-19 Identity = 49/91 (53.85%), Postives = 55/91 (60.44%), Query Frame = 1 Query: 79 TAPANKIITPNGPLRAKEASPLLNNKYPIIDHEYDXXXXXXXXXXXXXXXXXXXXXXNTACISKLFPTRSHTVAAQGGINAALGNMHKDDW 351 T+ K I + PLRAK+ S + KYP+IDH YD NTACI+KLFPTRSHTVAAQGGINAALGNM KDDW Sbjct: 22 TSSTLKKIASSQPLRAKQVSTSESVKYPVIDHTYDAIVVGAGGAGLRATFGLAEAGFNTACITKLFPTRSHTVAAQGGINAALGNMTKDDW 112
BLAST of FC899093 vs. ExPASy Swiss-Prot
Match: DHSA_YEAST (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Saccharomyces cerevisiae GN=SDH1 PE=1 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 4.149e-17 Identity = 50/105 (47.62%), Postives = 59/105 (56.19%), Query Frame = 1 Query: 37 SRLSRQLQVRNFSRTAPANKIITPNGPLRAKEASPLLNNKYPIIDHEYDXXXXXXXXXXXXXXXXXXXXXXNTACISKLFPTRSHTVAAQGGINAALGNMHKDDW 351 S LS+ +RN +RT ++ ++ AS + KY IIDHEYD TACISKLFPTRSHTVAAQGGINAALGNMHKD+W Sbjct: 7 SALSKLTLLRN-TRTFTSSALVRQTQGSVNGSASRSADGKYHIIDHEYDCVVIGAGGAGLRAAFGLAEAGYKTACISKLFPTRSHTVAAQGGINAALGNMHKDNW 110
BLAST of FC899093 vs. ExPASy Swiss-Prot
Match: DHSX_YEAST (Succinate dehydrogenase [ubiquinone] flavoprotein subunit 2, mitochondrial OS=Saccharomyces cerevisiae GN=YJL045W PE=1 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 1.207e-16 Identity = 44/92 (47.83%), Postives = 53/92 (57.61%), Query Frame = 1 Query: 76 RTAPANKIITPNGPLRAKEASPLLNNKYPIIDHEYDXXXXXXXXXXXXXXXXXXXXXXNTACISKLFPTRSHTVAAQGGINAALGNMHKDDW 351 RT ++ ++ G ++++ P KY IIDHEYD TAC+SKLFPTRSHTVAAQGGINAALGNMH DDW Sbjct: 16 RTFTSSSVVRQIGEVKSESKPPA---KYHIIDHEYDCVVVGAGGAGLRAAFGLAEAGYKTACLSKLFPTRSHTVAAQGGINAALGNMHPDDW 104
BLAST of FC899093 vs. ExPASy Swiss-Prot
Match: DHSA_DANRE (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Danio rerio GN=sdha PE=2 SV=2) HSP 1 Score: 83.1889 bits (204), Expect = 4.587e-16 Identity = 37/69 (53.62%), Postives = 46/69 (66.67%), Query Frame = 1 Query: 145 LNNKYPIIDHEYDXXXXXXXXXXXXXXXXXXXXXXNTACISKLFPTRSHTVAAQGGINAALGNMHKDDW 351 ++N+YP++DHE+D NTAC++KLFPTRSHTVAAQGGINAALGNM +DDW Sbjct: 48 VSNQYPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEQDDW 116
BLAST of FC899093 vs. ExPASy Swiss-Prot
Match: DHSA_RAT (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Rattus norvegicus GN=Sdha PE=1 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 7.824e-16 Identity = 46/112 (41.07%), Postives = 61/112 (54.46%), Query Frame = 1 Query: 16 MRQFGAASRLSRQLQVRNFSRTAPANKIITPNGPLRAKEASPLLNNKYPIIDHEYDXXXXXXXXXXXXXXXXXXXXXXNTACISKLFPTRSHTVAAQGGINAALGNMHKDDW 351 M GA SRL R ++ T + + + AK S ++ +YP++DHE+D NTAC++KLFPTRSHTVAAQGGINAALGNM +D+W Sbjct: 1 MAGVGAVSRLLRGRRLALAGATRGFHFSVGESKKASAK-VSDAISTQYPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACLTKLFPTRSHTVAAQGGINAALGNMEEDNW 111
BLAST of FC899093 vs. ExPASy Swiss-Prot
Match: DHSA_MACFA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Macaca fascicularis GN=SDHA PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 1.022e-15 Identity = 47/114 (41.23%), Postives = 61/114 (53.51%), Query Frame = 1 Query: 40 RLSRQLQVRNFS---------RTAPANKIITPNGPLRAK-EASPLLNNKYPIIDHEYDXXXXXXXXXXXXXXXXXXXXXXNTACISKLFPTRSHTVAAQGGINAALGNMHKDDW 351 RLSR L R + +T T +G RA + S ++ +YP++DHE+D NTAC++KLFPTRSHTVAAQGGINAALGNM +D+W Sbjct: 6 RLSRLLSTRRLALAKAWPAVLQTGTRGFHFTVDGNKRASAKVSDSISAQYPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNW 119
BLAST of FC899093 vs. ExPASy Swiss-Prot
Match: DHSAA_XENLA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit A, mitochondrial OS=Xenopus laevis GN=sdha-A PE=2 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 1.335e-15 Identity = 38/74 (51.35%), Postives = 46/74 (62.16%), Query Frame = 1 Query: 130 EASPLLNNKYPIIDHEYDXXXXXXXXXXXXXXXXXXXXXXNTACISKLFPTRSHTVAAQGGINAALGNMHKDDW 351 + S ++ +YP++DHE+D NTACI+KLFPTRSHTVAAQGGINAALGNM DDW Sbjct: 49 KVSDSISTQYPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACITKLFPTRSHTVAAQGGINAALGNMEDDDW 122
BLAST of FC899093 vs. ExPASy Swiss-Prot
Match: DHSA_PONAB (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Pongo abelii GN=SDHA PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 1.743e-15 Identity = 45/114 (39.47%), Postives = 62/114 (54.39%), Query Frame = 1 Query: 13 GMRQFGAASRLSRQLQVRNFSRTAPANKIITPNGPLRAK-EASPLLNNKYPIIDHEYDXXXXXXXXXXXXXXXXXXXXXXNTACISKLFPTRSHTVAAQGGINAALGNMHKDDW 351 G+ + +A RL+ +T T +G RA + S ++ +YP++DHE+D NTAC++KLFPTRSHTVAAQGGINAALGNM +D+W Sbjct: 6 GLSRLLSARRLALAKAWPTVLQTGARGFHFTVDGNKRASAKVSDSISAQYPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNW 119
BLAST of FC899093 vs. ExPASy Swiss-Prot
Match: DHSA_HUMAN (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Homo sapiens GN=SDHA PE=1 SV=2) HSP 1 Score: 81.2629 bits (199), Expect = 1.743e-15 Identity = 45/114 (39.47%), Postives = 62/114 (54.39%), Query Frame = 1 Query: 13 GMRQFGAASRLSRQLQVRNFSRTAPANKIITPNGPLRAK-EASPLLNNKYPIIDHEYDXXXXXXXXXXXXXXXXXXXXXXNTACISKLFPTRSHTVAAQGGINAALGNMHKDDW 351 G+ + +A RL+ +T T +G RA + S ++ +YP++DHE+D NTAC++KLFPTRSHTVAAQGGINAALGNM +D+W Sbjct: 6 GLSRLLSARRLALAKAWPTVLQTGTRGFHFTVDGNKRASAKVSDSISAQYPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNW 119
BLAST of FC899093 vs. ExPASy Swiss-Prot
Match: DHSA_BOVIN (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Bos taurus GN=SDHA PE=1 SV=3) HSP 1 Score: 81.2629 bits (199), Expect = 1.743e-15 Identity = 42/100 (42.00%), Postives = 55/100 (55.00%), Query Frame = 1 Query: 52 QLQVRNFSRTAPANKIITPNGPLRAKEASPLLNNKYPIIDHEYDXXXXXXXXXXXXXXXXXXXXXXNTACISKLFPTRSHTVAAQGGINAALGNMHKDDW 351 Q R+F T NK + + S ++ +YP++DHE+D NTAC++KLFPTRSHTVAAQGGINAALGNM +D+W Sbjct: 28 QTGTRSFHFTVDGNK-------RSSAKVSDAISAQYPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNW 120 The following BLAST results are available for this feature:
BLAST of FC899093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 25
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Sequences
The
following sequences are available for this feature:
EST sequence >FC899093 ID=FC899093; Name=FC899093; organism=Citrus clementina; type=EST; length=353bpback to top |