FC899093

Overview
NameFC899093
Unique NameFC899093
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length353
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7832 contig Ccv1_Contig7832:1..353. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC899093 vs. ExPASy Swiss-Prot
Match: DHSA_SCHPO (Probable succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Schizosaccharomyces pombe GN=sdh1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.394e-19
Identity = 49/91 (53.85%), Postives = 55/91 (60.44%), Query Frame = 1
Query:   79 TAPANKIITPNGPLRAKEASPLLNNKYPIIDHEYDXXXXXXXXXXXXXXXXXXXXXXNTACISKLFPTRSHTVAAQGGINAALGNMHKDDW 351
            T+   K I  + PLRAK+ S   + KYP+IDH YD                      NTACI+KLFPTRSHTVAAQGGINAALGNM KDDW
Sbjct:   22 TSSTLKKIASSQPLRAKQVSTSESVKYPVIDHTYDAIVVGAGGAGLRATFGLAEAGFNTACITKLFPTRSHTVAAQGGINAALGNMTKDDW 112          
BLAST of FC899093 vs. ExPASy Swiss-Prot
Match: DHSA_YEAST (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Saccharomyces cerevisiae GN=SDH1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.149e-17
Identity = 50/105 (47.62%), Postives = 59/105 (56.19%), Query Frame = 1
Query:   37 SRLSRQLQVRNFSRTAPANKIITPNGPLRAKEASPLLNNKYPIIDHEYDXXXXXXXXXXXXXXXXXXXXXXNTACISKLFPTRSHTVAAQGGINAALGNMHKDDW 351
            S LS+   +RN +RT  ++ ++          AS   + KY IIDHEYD                       TACISKLFPTRSHTVAAQGGINAALGNMHKD+W
Sbjct:    7 SALSKLTLLRN-TRTFTSSALVRQTQGSVNGSASRSADGKYHIIDHEYDCVVIGAGGAGLRAAFGLAEAGYKTACISKLFPTRSHTVAAQGGINAALGNMHKDNW 110          
BLAST of FC899093 vs. ExPASy Swiss-Prot
Match: DHSX_YEAST (Succinate dehydrogenase [ubiquinone] flavoprotein subunit 2, mitochondrial OS=Saccharomyces cerevisiae GN=YJL045W PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.207e-16
Identity = 44/92 (47.83%), Postives = 53/92 (57.61%), Query Frame = 1
Query:   76 RTAPANKIITPNGPLRAKEASPLLNNKYPIIDHEYDXXXXXXXXXXXXXXXXXXXXXXNTACISKLFPTRSHTVAAQGGINAALGNMHKDDW 351
            RT  ++ ++   G ++++   P    KY IIDHEYD                       TAC+SKLFPTRSHTVAAQGGINAALGNMH DDW
Sbjct:   16 RTFTSSSVVRQIGEVKSESKPPA---KYHIIDHEYDCVVVGAGGAGLRAAFGLAEAGYKTACLSKLFPTRSHTVAAQGGINAALGNMHPDDW 104          
BLAST of FC899093 vs. ExPASy Swiss-Prot
Match: DHSA_DANRE (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Danio rerio GN=sdha PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 4.587e-16
Identity = 37/69 (53.62%), Postives = 46/69 (66.67%), Query Frame = 1
Query:  145 LNNKYPIIDHEYDXXXXXXXXXXXXXXXXXXXXXXNTACISKLFPTRSHTVAAQGGINAALGNMHKDDW 351
            ++N+YP++DHE+D                      NTAC++KLFPTRSHTVAAQGGINAALGNM +DDW
Sbjct:   48 VSNQYPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEQDDW 116          
BLAST of FC899093 vs. ExPASy Swiss-Prot
Match: DHSA_RAT (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Rattus norvegicus GN=Sdha PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.824e-16
Identity = 46/112 (41.07%), Postives = 61/112 (54.46%), Query Frame = 1
Query:   16 MRQFGAASRLSRQLQVRNFSRTAPANKIITPNGPLRAKEASPLLNNKYPIIDHEYDXXXXXXXXXXXXXXXXXXXXXXNTACISKLFPTRSHTVAAQGGINAALGNMHKDDW 351
            M   GA SRL R  ++     T   +  +  +    AK  S  ++ +YP++DHE+D                      NTAC++KLFPTRSHTVAAQGGINAALGNM +D+W
Sbjct:    1 MAGVGAVSRLLRGRRLALAGATRGFHFSVGESKKASAK-VSDAISTQYPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACLTKLFPTRSHTVAAQGGINAALGNMEEDNW 111          
BLAST of FC899093 vs. ExPASy Swiss-Prot
Match: DHSA_MACFA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Macaca fascicularis GN=SDHA PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.022e-15
Identity = 47/114 (41.23%), Postives = 61/114 (53.51%), Query Frame = 1
Query:   40 RLSRQLQVRNFS---------RTAPANKIITPNGPLRAK-EASPLLNNKYPIIDHEYDXXXXXXXXXXXXXXXXXXXXXXNTACISKLFPTRSHTVAAQGGINAALGNMHKDDW 351
            RLSR L  R  +         +T       T +G  RA  + S  ++ +YP++DHE+D                      NTAC++KLFPTRSHTVAAQGGINAALGNM +D+W
Sbjct:    6 RLSRLLSTRRLALAKAWPAVLQTGTRGFHFTVDGNKRASAKVSDSISAQYPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNW 119          
BLAST of FC899093 vs. ExPASy Swiss-Prot
Match: DHSAA_XENLA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit A, mitochondrial OS=Xenopus laevis GN=sdha-A PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.335e-15
Identity = 38/74 (51.35%), Postives = 46/74 (62.16%), Query Frame = 1
Query:  130 EASPLLNNKYPIIDHEYDXXXXXXXXXXXXXXXXXXXXXXNTACISKLFPTRSHTVAAQGGINAALGNMHKDDW 351
            + S  ++ +YP++DHE+D                      NTACI+KLFPTRSHTVAAQGGINAALGNM  DDW
Sbjct:   49 KVSDSISTQYPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACITKLFPTRSHTVAAQGGINAALGNMEDDDW 122          
BLAST of FC899093 vs. ExPASy Swiss-Prot
Match: DHSA_PONAB (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Pongo abelii GN=SDHA PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.743e-15
Identity = 45/114 (39.47%), Postives = 62/114 (54.39%), Query Frame = 1
Query:   13 GMRQFGAASRLSRQLQVRNFSRTAPANKIITPNGPLRAK-EASPLLNNKYPIIDHEYDXXXXXXXXXXXXXXXXXXXXXXNTACISKLFPTRSHTVAAQGGINAALGNMHKDDW 351
            G+ +  +A RL+         +T       T +G  RA  + S  ++ +YP++DHE+D                      NTAC++KLFPTRSHTVAAQGGINAALGNM +D+W
Sbjct:    6 GLSRLLSARRLALAKAWPTVLQTGARGFHFTVDGNKRASAKVSDSISAQYPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNW 119          
BLAST of FC899093 vs. ExPASy Swiss-Prot
Match: DHSA_HUMAN (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Homo sapiens GN=SDHA PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.743e-15
Identity = 45/114 (39.47%), Postives = 62/114 (54.39%), Query Frame = 1
Query:   13 GMRQFGAASRLSRQLQVRNFSRTAPANKIITPNGPLRAK-EASPLLNNKYPIIDHEYDXXXXXXXXXXXXXXXXXXXXXXNTACISKLFPTRSHTVAAQGGINAALGNMHKDDW 351
            G+ +  +A RL+         +T       T +G  RA  + S  ++ +YP++DHE+D                      NTAC++KLFPTRSHTVAAQGGINAALGNM +D+W
Sbjct:    6 GLSRLLSARRLALAKAWPTVLQTGTRGFHFTVDGNKRASAKVSDSISAQYPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNW 119          
BLAST of FC899093 vs. ExPASy Swiss-Prot
Match: DHSA_BOVIN (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Bos taurus GN=SDHA PE=1 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 1.743e-15
Identity = 42/100 (42.00%), Postives = 55/100 (55.00%), Query Frame = 1
Query:   52 QLQVRNFSRTAPANKIITPNGPLRAKEASPLLNNKYPIIDHEYDXXXXXXXXXXXXXXXXXXXXXXNTACISKLFPTRSHTVAAQGGINAALGNMHKDDW 351
            Q   R+F  T   NK         + + S  ++ +YP++DHE+D                      NTAC++KLFPTRSHTVAAQGGINAALGNM +D+W
Sbjct:   28 QTGTRSFHFTVDGNK-------RSSAKVSDAISAQYPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNW 120          
The following BLAST results are available for this feature:
BLAST of FC899093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
DHSA_SCHPO3.394e-1953.85Probable succinate dehydrogenase [ubiquinone] flav... [more]
DHSA_YEAST4.149e-1747.62Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSX_YEAST1.207e-1647.83Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_DANRE4.587e-1653.62Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_RAT7.824e-1641.07Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_MACFA1.022e-1541.23Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSAA_XENLA1.335e-1551.35Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_PONAB1.743e-1539.47Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_HUMAN1.743e-1539.47Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_BOVIN1.743e-1542.00Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA89DB07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA89DB07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC899093 ID=FC899093; Name=FC899093; organism=Citrus clementina; type=EST; length=353bp
ATGTACTCGTCCGGCATGAGGCAGTTCGGCGCCGCCTCGAGGCTTTCGCG
CCAGCTTCAGGTCCGCAACTTCTCTCGCACAGCGCCCGCAAACAAGATCA
TCACCCCCAATGGCCCTCTACGCGCCAAGGAGGCCTCTCCCCTGCTCAAC
AACAAGTACCCCATCATCGACCACGAGTACGATGCCCTCGTCGTCGGCGC
CGGTGGTGCCGGTCTGCGCGCCGCCTTCGGTCTCGCAGAGGCCGGCTTCA
ACACTGCCTGTATCTCGAAGCTCTTCCCCACCAGATCACACACTGTCGCC
GCCCAGGGTGGTATCAACGCCGCGCTAGGAAACATGCACAAGGACGACTG
GAG
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