FC899097

Overview
NameFC899097
Unique NameFC899097
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length961
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7074 contig Ccv1_Contig7074:1..961. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC899097 vs. ExPASy Swiss-Prot
Match: UMP1_ARATH (Uncharacterized protein At3g15000, mitochondrial OS=Arabidopsis thaliana GN=At3g15000 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 4.030e-42
Identity = 79/130 (60.77%), Postives = 104/130 (80.00%), Query Frame = 3
Query:  213 SPLNDPSPNWSNRPPKETIMLDGCDYQHWLIVMEFPNPSGLSEEEMINAYVKTLAAVVGSEEEAKKKIYSVCTTTYTGFGALIDEELSYKVKGQPGVLWVLPDSYIDVPNKDYGGDLFVDGKVI-HRPQY 599
            S LNDP+PNWSNRPPKETI+LDGCD++HWL+V+E P     + +E+I++Y+KTLA +VGSE+EA+ KIYSV T  Y  FGAL+ E+LS+K+K    V WVLPDSY+DV NKDYGG+ F+DGK + + P+Y
Sbjct:   72 SSLNDPNPNWSNRPPKETILLDGCDFEHWLVVVEPPQGEP-TRDEIIDSYIKTLAQIVGSEDEARMKIYSVSTRCYYAFGALVSEDLSHKLKELSNVRWVLPDSYLDVRNKDYGGEPFIDGKAVPYDPKY 200          
BLAST of FC899097 vs. ExPASy Swiss-Prot
Match: DAG_ANTMA (DAG protein, chloroplastic OS=Antirrhinum majus GN=DAG PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.027e-37
Identity = 89/181 (49.17%), Postives = 112/181 (61.88%), Query Frame = 3
Query:   81 SIITRTLTSPRSRLAIPILNKQQ-------PQIGPDPICNPA------RFKTSGSSYSPLNDPSPNWSNRPPKETIMLDGCDYQHWLIVMEFPNPSGLSEEEMINAYVKTLAAVVGSEEEAKKKIYSVCTTTYTGFGALIDEELSYKVKGQPGVLWVLPDSYIDVPNKDYGGDLFVDGKVI 584
            S++ +TLT P S+   P+L+          P   P PI + +      R  T G   S  N+ + N      +ETIML GCDY HWLIVMEFP     + E+MI+ Y+ TLA V+GS EEAKK +Y+  TTTYTGF   + EE S K KG PGVLWVLPDSYIDV NKDYGGD +V+G++I
Sbjct:    7 SLLPKTLT-PNSKTLAPLLSILSTSSLSFLPCTRPHPIKSRSAAYPTVRALTDGEYSSRRNNNNNNSGEE--RETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVTEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEII 184          
The following BLAST results are available for this feature:
BLAST of FC899097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
UMP1_ARATH4.030e-4260.77Uncharacterized protein At3g15000, mitochondrial O... [more]
DAG_ANTMA1.027e-3749.17DAG protein, chloroplastic OS=Antirrhinum majus GN... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA89DB08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA89DB08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC899097 ID=FC899097; Name=FC899097; organism=Citrus clementina; type=EST; length=961bp
CGACGGACTCACACACTCTCGAGTCTCAGACCAAACTCAGCAAAAACATG
GCGCACCTTGCCGCGCGGCGCACAGTAGCATCAATCATAACCCGCACCCT
CACTTCTCCTCGCTCCCGCCTCGCTATACCTATTCTCAACAAACAACAAC
CGCAAATCGGCCCGGACCCAATTTGCAACCCGGCCCGTTTCAAAACATCC
GGTTCGAGCTACTCGCCCCTCAACGACCCGTCTCCGAATTGGAGCAACCG
GCCGCCGAAAGAGACAATAATGCTCGACGGGTGCGATTACCAGCATTGGC
TGATTGTTATGGAGTTTCCTAATCCCTCAGGGCTCAGTGAGGAGGAAATG
ATCAACGCTTATGTCAAAACACTCGCTGCTGTTGTTGGCAGTGAGGAGGA
AGCGAAGAAGAAGATATACTCAGTCTGTACGACGACATATACTGGGTTTG
GTGCACTTATTGATGAGGAGCTTTCTTACAAAGTTAAAGGTCAGCCTGGA
GTTCTTTGGGTTTTGCCGGATTCATATATTGATGTTCCCAACAAAGATTA
TGGAGGGGATTTGTTTGTTGATGGCAAAGTTATCCATAGACCACAATATA
GATTCACTGAGAGGCAGCAAAGGCCACGCACACGGCGTCGAGAAACAACA
CAGGCCGACAGGAGAAGGCTCTGGGCTCAGAACCAGAGTGCTCCATCGCA
GCAACCAACCTCAATGAGTAACCAGAATCCTGCTCAAGCTGGTGGGACAA
ATTTCTCTATAAACCAAGGACAAAATAACCAGAAGAGTGCTTGAGAATTC
ACAGTATAGTTATGGGGCTATTGGGTTTGTGTTGTCAGTGGCATTTCTTA
TTCGGTGGATAATTACTGAGTTCTCTTGCTTTTTATGTTCCATGGCAATT
ATATGCATATTTCAAGTCATGAACATATGTGAATATAGTTATTTGAGGAT
TATTGAAAAAT
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