FC899924

Overview
NameFC899924
Unique NameFC899924
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length864
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig925 contig Ccv1_Contig925:59..925. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC899924 vs. ExPASy Swiss-Prot
Match: HFB2B_ARATH (Heat stress transcription factor B-2b OS=Arabidopsis thaliana GN=HSFB2B PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.825e-12
Identity = 48/123 (39.02%), Postives = 59/123 (47.97%), Query Frame = -3 
Query:  197 AGAFALMTNYASGQLDNVSL-PEGKTVEILPARKADEGGAKVEEAEE-------LDLTPRLFGVSIGAKRARR------XXXXXXXXXXXXXXXXQPGSDVKSEPLDANNDHHQEPPWLELGK 523
            A  + LM N+  GQ D   L PEGK +++LP R+         E E         DLTPRLFGVSIG KRARR                      +  SDVK+EP++ NN  +    WLELGK
Sbjct:  255 ANIYTLMANFTPGQEDCAHLLPEGKPLDLLPERQEMSEAIMASEIETGIGLKLGEDLTPRLFGVSIGVKRARREEELGAAEEEDDDRREAAAQEGEQSSDVKAEPMEENNSGNHNGSWLELGK 377
The following BLAST results are available for this feature:
BLAST of FC899924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
HFB2B_ARATH4.825e-1239.02Heat stress transcription factor B-2b OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA92AG11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA92AG11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC899924 ID=FC899924; Name=FC899924; organism=Citrus clementina; type=EST; length=864bp
TCAGGATTTTGCCTTCTCTCAGTTTTCAGCCGCTTTGCTGCTCTCCGCAC
TCCTTTCACATCCCCACCTTCCTCGGATCAAAAAGCGCTTGCCTTTTAAT
AAGCAAACAATTTGACCGGATCCGCACATATCATCACGTGGCCCCATCAC
CACGTGCACCAACCATATTAATCCATATCGCCGTCAGTTCTCACGATTTA
CCCAGTTCTAGCCAAGGAGGTTCCTGATGATGATCATTATTCGCATCCAA
CGGCTCTGATTTAACATCCGACCCCGGCTGATTCTCACCTTGCTGTTGCT
GCAGTTGATTCTTCTCTTCTTCCTCTTCTCTCCTCGCACGCTTCGCCCCA
ATCGACACACCAAACAACCTCGGAGTCAGATCCAACTCCTCCGCCTCCTC
CACCTTCGCGCCGCCTTCATCGGCCTTCCTCGCCGGCAGTATCTCCACCG
TCTTCCCCTCCGGCAGACTTACGTTGTCCAGCTGACCGGAAGCGTAATTC
GTCATTAAAGCGAAAGCTCCGGCATCGTCGTACAACTCGTAGTTCTAATC
ACGGTCGTAGTCGGCACCGCCACCGGCGACGAATTAGCTGATATCACCTG
TTCCAGCCGGAGTTCGCCGGCGAAATCTACCGTGCAACCGCAGCGACCGT
CACAGTCCCCGCTGTGGCAGCTGTGAACCAGAACAGGGAAACAAGATGCA
GCAGAGAAAATCAACTGCGTCGGGGCGGCCATCTGGCACCGACGGATCTG
ATTTTTCGTATCGGATGGTCGTCGATTCCCGATACACAAAGGTGGCTAGA
GGGAAGTCTCGTCTCTCTAAACTCATTTTCGCTCAAGCTGCCATTCAATT
GATAGGATTGTTGT
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