FC899927

Overview
NameFC899927
Unique NameFC899927
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length807
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15518 contig Ccv1_Contig15518:109..915. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC899927 vs. ExPASy Swiss-Prot
Match: PGKH_ARATH (Phosphoglycerate kinase, chloroplastic OS=Arabidopsis thaliana GN=At1g56190 PE=1 SV=2)

HSP 1 Score: 376.711 bits (966), Expect = 8.229e-104
Identity = 191/223 (85.65%), Postives = 209/223 (93.72%), Query Frame = 3
Query:  141 ASRRLGFSAA-DPLLTCHVASRLSSIKTKGTRAVVSMAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVS 806
            ++RRLGFSA  D   + HVAS++ S++ KG R V++MAKKSVG+L+  DLKGKKVFVRADLNVPLDDNQNITDDTRIRAA+PTIK LI+NGAKVILS+HLGRPKGVTPKFSLAPLVPRLSELLGI+VVKADDCIGPEVE LVASLPEGGVLLLENVRFYKEEEKN+P+FAKKLASLADLYVNDAFGTAHRAHASTEGVTK+LKPSVAGFLLQKELDYLVGAVS
Sbjct:   38 SARRLGFSAVVDSRFSVHVASKVHSVRGKGARGVITMAKKSVGDLNSVDLKGKKVFVRADLNVPLDDNQNITDDTRIRAAIPTIKFLIENGAKVILSTHLGRPKGVTPKFSLAPLVPRLSELLGIEVVKADDCIGPEVETLVASLPEGGVLLLENVRFYKEEEKNEPDFAKKLASLADLYVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQKELDYLVGAVS 260          
BLAST of FC899927 vs. ExPASy Swiss-Prot
Match: PGKH_TOBAC (Phosphoglycerate kinase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 375.555 bits (963), Expect = 1.833e-103
Identity = 196/224 (87.50%), Postives = 209/224 (93.30%), Query Frame = 3
Query:  147 RRLGFS--AADPLLTCHVASRLSSIKT--KGTRAVVSMAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVS 806
            RRLGF+  AAD L T HVA++L S+K+  K  R V SMAKKSVG+L+ A+LKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHL+ NGAKVILSSHLGRPKGVTPK+SLAPLVPRLSELLGIQVVK +DCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKN+PEFAKKLASLADLYVNDAFGTAHRAHASTEGVTK+LKPSVAGFLLQKELDYLVGAVS
Sbjct:   39 RRLGFAGAAADSLFTNHVATKLRSLKSSSKPIRGVASMAKKSVGDLTAAELKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLMANGAKVILSSHLGRPKGVTPKYSLAPLVPRLSELLGIQVVKVEDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNEPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQKELDYLVGAVS 262          
BLAST of FC899927 vs. ExPASy Swiss-Prot
Match: PGKH_SPIOL (Phosphoglycerate kinase, chloroplastic (Fragment) OS=Spinacia oleracea PE=2 SV=2)

HSP 1 Score: 365.155 bits (936), Expect = 2.478e-100
Identity = 186/209 (89.00%), Postives = 198/209 (94.74%), Query Frame = 3
Query:  189 HVASRLSSIKTKGT---RAVVSMAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVS 806
            HV S+++S K++ T   R V SMAKKSVG+L+ ADLKGKKVFVRADLNVPLDD+QNITDDTRIRAA+PTIKHLI NGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLG+QVVKADDCIGP+VEKLVA LPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTK+LKPSVAGFLLQKELDYLVGAVS
Sbjct:    7 HVLSKINSYKSQSTKPIRGVASMAKKSVGDLTSADLKGKKVFVRADLNVPLDDSQNITDDTRIRAAIPTIKHLINNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGLQVVKADDCIGPDVEKLVAELPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQKELDYLVGAVS 215          
BLAST of FC899927 vs. ExPASy Swiss-Prot
Match: PGKH_WHEAT (Phosphoglycerate kinase, chloroplastic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 350.903 bits (899), Expect = 4.836e-96
Identity = 183/223 (82.06%), Postives = 200/223 (89.69%), Query Frame = 3
Query:  144 SRRLGFSA-ADPLLTCHVASRLSSIKT-KGTRAVVSMAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVS 806
            +R L F+A ADP L  HVASR  +    +GTRAV +MAKKSVG+L+ ADL+GK+V VRADLNVPLDDNQNITDDTRIRAA+PTIK+L+ NGAKVIL+SHLGRPKGVTPKFSLAPLVPRLSELLGI+V KA+D IGPEVEKLVA L  G VLLLENVRFYKEEEKNDPEFAKKLASLADL+VNDAFGTAHRAHASTEGVTK+LKPSVAGFLLQKELDYL GAVS
Sbjct:   37 ARSLAFAAGADPRLAVHVASRCRAASAARGTRAVATMAKKSVGDLTAADLEGKRVLVRADLNVPLDDNQNITDDTRIRAAIPTIKYLLSNGAKVILTSHLGRPKGVTPKFSLAPLVPRLSELLGIEVKKAEDVIGPEVEKLVADLANGAVLLLENVRFYKEEEKNDPEFAKKLASLADLFVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQKELDYLDGAVS 259          
BLAST of FC899927 vs. ExPASy Swiss-Prot
Match: PGKY_WHEAT (Phosphoglycerate kinase, cytosolic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 315.079 bits (806), Expect = 2.940e-85
Identity = 157/185 (84.86%), Postives = 173/185 (93.51%), Query Frame = 3
Query:  252 KKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVS 806
            K+SVG L  ADLKGKKVFVRADLNVPLDD Q ITDDTRIRA++PTIK+L++ GAKVIL+SHLGRPKGVTPKFSL PLV RLSELLG++VV A DCIG EVEKL A+LP+GGVLLLENVRFYKEEEKNDPEFAKKLAS+ADLYVNDAFGTAHRAHASTEGVTK+L+PSVAGFL+QKELDYLVGAV+
Sbjct:    4 KRSVGTLGEADLKGKKVFVRADLNVPLDDAQKITDDTRIRASIPTIKYLLEKGAKVILASHLGRPKGVTPKFSLKPLVARLSELLGLEVVMAPDCIGEEVEKLAAALPDGGVLLLENVRFYKEEEKNDPEFAKKLASVADLYVNDAFGTAHRAHASTEGVTKFLRPSVAGFLMQKELDYLVGAVA 188          
BLAST of FC899927 vs. ExPASy Swiss-Prot
Match: PGKY_TOBAC (Phosphoglycerate kinase, cytosolic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 6.551e-85
Identity = 157/185 (84.86%), Postives = 173/185 (93.51%), Query Frame = 3
Query:  252 KKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVS 806
            KKSVG L  ADLKGK+VFVR DLNVPLD+N NITDDTRIRAAVPTIK+L+Q+G+ VIL+SHLGRPKGVTPK+SL PLVPRLSELLG++V  A+D IGPEVEKLVA +PEGGVLLLENVRFYKEEEKN+PEFAKKLASLADLYVNDAFGTAHRAHASTEGV KYLKP+VAGFL+QKELDYLVGAV+
Sbjct:    4 KKSVGSLKEADLKGKRVFVRVDLNVPLDENFNITDDTRIRAAVPTIKYLMQHGSHVILASHLGRPKGVTPKYSLKPLVPRLSELLGVEVKIANDSIGPEVEKLVAEIPEGGVLLLENVRFYKEEEKNEPEFAKKLASLADLYVNDAFGTAHRAHASTEGVAKYLKPAVAGFLMQKELDYLVGAVA 188          
BLAST of FC899927 vs. ExPASy Swiss-Prot
Match: PGKH_VOLCA (Phosphoglycerate kinase, chloroplastic OS=Volvox carteri GN=PGK PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 2.257e-77
Identity = 163/232 (70.26%), Postives = 184/232 (79.31%), Query Frame = 3
Query:  126 RMPTSASRRLGFSA-ADPLLTCHVASRLS-SIKTKG-TRAVVSMAKKSVGELSGADLKGKKVFVRADLNVPLDDNQ-NITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVS 806
            R+   A R + FS+ A P+L    A  +S  I+  G +R VV   KKSVG+L  ADL+GK+VFVRADLNVPLD     ITDDTRIRAAVPT+K+L+ NGAKV+L+SHLGRPKG    K+ L P+V RLSELLG +V K DDCIGP VE+ VASL  G +LLLENVRFYKEEEKNDPEFAKKLAS ADLYVNDAFGTAHRAHASTEGVTK+LKPSVAGFLLQKELDYL GAVS
Sbjct:   18 RVAAVAPRVVPFSSVARPVLRSTFAPEVSIDIRRAGRSRIVVEAVKKSVGDLGKADLEGKRVFVRADLNVPLDKKTLAITDDTRIRAAVPTLKYLLDNGAKVLLTSHLGRPKGGPEDKYRLTPVVARLSELLGKEVKKVDDCIGPSVEQAVASLKSGELLLLENVRFYKEEEKNDPEFAKKLASNADLYVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQKELDYLDGAVS 249          
BLAST of FC899927 vs. ExPASy Swiss-Prot
Match: PGKH_CHLRE (Phosphoglycerate kinase, chloroplastic OS=Chlamydomonas reinhardtii PE=1 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 3.983e-74
Identity = 146/193 (75.65%), Postives = 163/193 (84.46%), Query Frame = 3
Query:  234 AVVSMAKKSVGELSGADLKGKKVFVRADLNVPLDD-NQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVS 806
            +VV   KKSVG+L  ADL+GK+VFVRADLNVPLD     ITDDTRIRAAVPT+K+L+ NGAKV+L+SHLGRPKG    K+ L P+V RLSELLG  V K DDCIGPEVEK V ++  G +LLLEN RFYKEEEKN+PEFAKKLA+ ADLYVNDAFGTAHRAHASTEGVTK+LKPSVAGFLLQKELDYL GAVS
Sbjct:   56 SVVEAVKKSVGDLHKADLEGKRVFVRADLNVPLDKATLAITDDTRIRAAVPTLKYLLDNGAKVLLTSHLGRPKGGPEDKYRLTPVVARLSELLGKPVTKVDDCIGPEVEKAVGAMKNGELLLLENCRFYKEEEKNEPEFAKKLAANADLYVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQKELDYLDGAVS 248          
BLAST of FC899927 vs. ExPASy Swiss-Prot
Match: PGK_ANAVT (Phosphoglycerate kinase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=pgk PE=3 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 3.858e-69
Identity = 133/186 (71.51%), Postives = 149/186 (80.11%), Query Frame = 3
Query:  246 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAV 803
            M+KK+V  LS AD+ GK+  VR D NVPLDD  NITDDTRIRAA+PTI+ L Q GAKVIL+SH GRPKGV  K  L P+  RLSELLG +VVK DD IG EV   VA+L  G VLLLENVRFYKEEEKNDPEFAKKLA+ AD YVNDAFGTAHRAHASTEGVTK+L PSVAG+L++KEL YL  A+
Sbjct:    1 MSKKTVASLSAADISGKRALVRVDFNVPLDDQGNITDDTRIRAALPTIQDLTQKGAKVILASHFGRPKGVDEKLRLTPVAKRLSELLGQEVVKTDDSIGDEVAAKVAALQNGQVLLLENVRFYKEEEKNDPEFAKKLAANADFYVNDAFGTAHRAHASTEGVTKFLSPSVAGYLVEKELQYLQSAI 186          
BLAST of FC899927 vs. ExPASy Swiss-Prot
Match: PGK_ANASP (Phosphoglycerate kinase OS=Anabaena sp. (strain PCC 7120) GN=pgk PE=1 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 5.039e-69
Identity = 132/186 (70.97%), Postives = 149/186 (80.11%), Query Frame = 3
Query:  246 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAV 803
            M+KK+V  LS AD+ GK+  VR D NVPLDD  NITDDTRIRAA+PTI+ L Q GAKVIL+SH GRPKGV  K  L P+  RLSELLG +V+K DD IG EV   VA+L  G VLLLENVRFYKEEEKNDPEFAKKLA+ AD YVNDAFGTAHRAHASTEGVTK+L PSVAG+L++KEL YL  A+
Sbjct:    1 MSKKTVASLSAADISGKRALVRVDFNVPLDDQGNITDDTRIRAALPTIQDLTQKGAKVILASHFGRPKGVDEKLRLTPVAKRLSELLGQEVIKTDDSIGDEVAAKVATLQNGQVLLLENVRFYKEEEKNDPEFAKKLAANADFYVNDAFGTAHRAHASTEGVTKFLSPSVAGYLVEKELQYLQSAI 186          
The following BLAST results are available for this feature:
BLAST of FC899927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGKH_ARATH8.229e-10485.65Phosphoglycerate kinase, chloroplastic OS=Arabidop... [more]
PGKH_TOBAC1.833e-10387.50Phosphoglycerate kinase, chloroplastic OS=Nicotian... [more]
PGKH_SPIOL2.478e-10089.00Phosphoglycerate kinase, chloroplastic (Fragment) ... [more]
PGKH_WHEAT4.836e-9682.06Phosphoglycerate kinase, chloroplastic OS=Triticum... [more]
PGKY_WHEAT2.940e-8584.86Phosphoglycerate kinase, cytosolic OS=Triticum aes... [more]
PGKY_TOBAC6.551e-8584.86Phosphoglycerate kinase, cytosolic OS=Nicotiana ta... [more]
PGKH_VOLCA2.257e-7770.26Phosphoglycerate kinase, chloroplastic OS=Volvox c... [more]
PGKH_CHLRE3.983e-7475.65Phosphoglycerate kinase, chloroplastic OS=Chlamydo... [more]
PGK_ANAVT3.858e-6971.51Phosphoglycerate kinase OS=Anabaena variabilis (st... [more]
PGK_ANASP5.039e-6970.97Phosphoglycerate kinase OS=Anabaena sp. (strain PC... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA92AG12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA92AG12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC899927 ID=FC899927; Name=FC899927; organism=Citrus clementina; type=EST; length=807bp
TTGCGCCTTTACTACGCCCCTCCACTCCCGCCATATCAATGGCTTCAGCC
ACCGCTCCCACTACTTTCTCTCTCGTCAAAACCGCCGCAAGTTCATCCCT
TTCTTCCCCACGCGCCTCCTTCCTGCGCATGCCCACTTCAGCATCCCGCA
GGCTGGGGTTCTCCGCAGCCGACCCGCTGCTGACCTGCCATGTGGCGTCG
AGGCTGAGCTCGATTAAGACGAAGGGCACTCGTGCGGTGGTGTCGATGGC
GAAGAAGAGCGTGGGGGAGTTGAGTGGAGCTGATTTGAAAGGGAAGAAGG
TGTTTGTAAGAGCTGACTTGAATGTGCCTTTGGATGATAATCAGAACATT
ACTGATGATACTAGAATCAGAGCTGCTGTTCCCACCATCAAGCATTTGAT
TCAAAATGGAGCTAAAGTCATTCTTTCTAGCCACTTGGGAAGACCAAAGG
GTGTTACTCCGAAATTCAGTTTGGCTCCTCTTGTGCCTCGTCTTTCTGAA
CTCCTGGGCATTCAGGTTGTGAAGGCTGATGACTGCATTGGTCCAGAGGT
AGAAAAGCTTGTAGCCTCACTTCCTGAAGGCGGTGTTCTTCTTCTTGAAA
ACGTGAGGTTCTACAAAGAGGAGGAAAAAAACGATCCTGAGTTTGCCAAG
AAGCTTGCCTCTTTGGCAGATCTCTATGTCAATGATGCTTTTGGGACCGC
TCACAGAGCCCATGCCTCAACTGAGGGAGTCACAAAATATTTGAAGCCTT
CTGTTGCTGGTTTCCTCTTGCAGAAGGAACTGGACTACCTTGTTGGGGCG
GTTTCAA
back to top