FC899928

Overview
NameFC899928
Unique NameFC899928
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length835
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC899928_ssr219 microsatellite FC899928_ssr219:219..230. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12498 contig Ccv1_Contig12498:1..832. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: Y1181_ARATH (Uncharacterized aarF domain-containing protein kinase At1g71810, chloroplastic OS=Arabidopsis thaliana GN=At1g71810 PE=1 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 3.948e-72
Identity = 143/202 (70.79%), Postives = 163/202 (80.69%), Query Frame = 3
Query:  234 ASPPIPALPANQQLKIYGKPI--NHRHLKSSRVSATRDDVDAFTEKSSYLFKLSSTDADSIVEYDLRKIASVYRRKPLILLRRVFQVGTTFGWWFGSRFVDELMERSDQMFPVRAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVAAASLGQVYQAR 833
            +S PI + PAN  L I  +P   + R   +  VSA   DVD+FT KS YLF LS+ +ADS+ EY+  +I  +Y++KPLILLRR+ Q+GTTF +WFG R  DE +ERSDQMF VRAAELRK+LVELGPAYVKIAQAVSSRPDLIPP YLDELSLLQDQITPFS+EVAFN IE ELGLPIDELFSEISPEPVAAASLGQVYQAR
Sbjct:    6 SSMPIVSFPANPNLLINPQPSWPSRRGNSAVVVSAASRDVDSFTSKSGYLFSLSADEADSLSEYNFPRIDGMYKKKPLILLRRLAQIGTTFSYWFGLRLADEALERSDQMFKVRAAELRKLLVELGPAYVKIAQAVSSRPDLIPPIYLDELSLLQDQITPFSTEVAFNMIEDELGLPIDELFSEISPEPVAAASLGQVYQAR 207          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: Y005_SYNY3 (Uncharacterized protein sll0005 OS=Synechocystis sp. (strain PCC 6803) GN=sll0005 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.202e-28
Identity = 66/146 (45.21%), Postives = 96/146 (65.75%), Query Frame = 3
Query:  414 EYDLRKIASVYRRKPLILLRRVFQV-----GTTFG-WWFGSRFVDELMERSDQMFPVRAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVAAASLGQVYQAR 833
            EY    I   YR++PL +L R+  +         G WW   R  D  + R+      +A +LR++L  LGP Y+K+ QA+S+RPDL+PP +LDEL+ LQDQ+  F +EVA+  IE+ELG P +E+++E+SPEP+AAASLGQVY+ +
Sbjct:   52 EYHPDLIMEFYRKRPLQVLGRLINILFPLLRFILGIWWEKLRGKDPTVSRA------KAIQLRELLTNLGPTYIKVGQALSTRPDLVPPVFLDELTTLQDQLPSFPNEVAYRFIEEELGAPAEEIYAELSPEPIAAASLGQVYKGK 191          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: Y1919_SYNY3 (Uncharacterized protein slr1919 OS=Synechocystis sp. (strain PCC 6803) GN=slr1919 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.570e-28
Identity = 62/146 (42.47%), Postives = 100/146 (68.49%), Query Frame = 3
Query:  393 TDADSIVEYDLRKIASVYRRKPLILLRRVFQVGTTFGWWFGSRFVDELMERSDQMFPVRAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVAAASLGQVYQA 830
            ++ D+I  Y+ + IA+ YRR+P  +L R  +V  +FG++      D+   + +     RA +LR++L +LGP ++K+ QA+S+RPDL+   +L+EL  LQDQ+ PF +++AF  +E++LG+ +DE + EIS  PVAAASLGQVY+A
Sbjct:   11 SELDNIRRYNAQAIANYYRRRPWKVLWRALEVVWSFGFFLTCLLWDQWTGQVEYYKRQRAEDLRELLTKLGPTFIKVGQALSTRPDLVRRDFLEELIKLQDQLPPFDNDLAFQLMEEQLGMKVDEAYREISAHPVAAASLGQVYRA 156          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: Y4139_ARATH (Uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic OS=Arabidopsis thaliana GN=At4g31390 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.586e-26
Identity = 55/122 (45.08%), Postives = 87/122 (71.31%), Query Frame = 3
Query:  465 LLRRVFQVGTTFGWWFGSRFVDELMERSDQMFPVRAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVAAASLGQVYQA 830
            L+ R  ++  T G ++ +   D L+ R +++ P RA +LR +L  LGP+++K  Q +++RPD+I   Y++EL +LQD + PF +EVAFN IE+ELG P++ +FS+IS + +AAASLGQVY+A
Sbjct:  132 LVSRGVEIVWTLGLYWSTLTYDFLVGRDEEVVPFRARQLRNLLCNLGPSFIKAGQVLANRPDIIREDYMNELCILQDDVPPFPNEVAFNIIEEELGQPLENIFSKISSQTIAAASLGQVYRA 253          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: Y1960_ARATH (Uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic OS=Arabidopsis thaliana GN=At1g79600 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.003e-24
Identity = 59/139 (42.45%), Postives = 84/139 (60.43%), Query Frame = 3
Query:  417 YDLRKIASVYRRKPLILLRRVFQVGTTFGWWFGSRFVDELMERSDQMFPVRAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVAAASLGQVYQAR 833
            Y    IA  +  +P   LRR  ++    G +     +D+     ++    RA ELR+I   LGP +VK+ Q +S+RPDL PP YL+EL+ LQD +  F    AF  IE+EL L ++ +FS +SPEP+AAASLGQVY+A+
Sbjct:   96 YSPELIARKHGSQPFKALRRSLEILGALGGFALKLGIDQKQGNLEKNMKKRAIELRRIFTRLGPTFVKLGQGLSTRPDLCPPDYLEELAELQDALPTFPDAEAFACIERELDLSLETIFSSVSPEPIAAASLGQVYKAQ 234          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: Y1770_SYNY3 (Uncharacterized protein sll1770 OS=Synechocystis sp. (strain PCC 6803) GN=sll1770 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.629e-17
Identity = 45/110 (40.91%), Postives = 71/110 (64.55%), Query Frame = 3
Query:  504 WWFGSRFVDELMERSDQMFPVRAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVAAASLGQVYQAR 833
            W +   + +E +++  +    +A  +R+ L+ LGP ++K+ Q  S+R DL P  Y++ELS LQD++  FS E A   IE+ELG PI +L+    P P+AAASLGQV++A+
Sbjct:   66 WSYAGGYTEEKLQQRRRR---QAKWIRENLLSLGPTFIKVGQLFSTRSDLFPAEYVEELSKLQDEVPAFSYEQAAGIIEEELGKPIAKLYRSFDPVPLAAASLGQVHKAQ 172          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_PSEMY (Probable ubiquinone biosynthesis protein ubiB OS=Pseudomonas mendocina (strain ymp) GN=ubiB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.379e-16
Identity = 40/89 (44.94%), Postives = 60/89 (67.42%), Query Frame = 3
Query:  567 RAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVAAASLGQVYQAR 833
            R A LR  L +LGP ++K  Q +S+R DL+PP   DEL+ LQDQ+ PF  + A   IE++LG P+ +LF+    +P+A+AS+ QV+ A+
Sbjct:   55 RGARLRLALEDLGPIFIKFGQLLSTRRDLLPPDIADELARLQDQVPPFPEDQAIALIERQLGAPVSQLFARFDSQPLASASVAQVHAAQ 143          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_MARAV (Probable ubiquinone biosynthesis protein ubiB OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=ubiB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.379e-16
Identity = 43/88 (48.86%), Postives = 58/88 (65.91%), Query Frame = 3
Query:  567 RAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVAAASLGQVYQA 830
            R   LR  L ELGP +VK  Q +S+R DL+P    + L  LQD++ PF SE A   IE+ LG P+ ELF+E SP+P+A+AS+ QV+ A
Sbjct:   51 RGDRLRLALEELGPVFVKFGQILSTRRDLLPDDMAESLKQLQDRVPPFPSEQARGIIEKSLGAPVSELFAEFSPDPMASASVAQVHAA 138          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_PSEP1 (Probable ubiquinone biosynthesis protein ubiB OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=ubiB PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.801e-16
Identity = 42/89 (47.19%), Postives = 59/89 (66.29%), Query Frame = 3
Query:  567 RAAELRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVAAASLGQVYQAR 833
            R A LR  L +LGP ++K  Q +S+R DL+PP   DEL LLQD++ PF  + A   IE++LG  + E+FS    EP+A+AS+ QV+ AR
Sbjct:   56 RGARLRLALQDLGPIFIKFGQLLSTRRDLLPPDIADELMLLQDRVPPFDPKKAVALIEEQLGAKVGEVFSRFDVEPLASASVAQVHAAR 144          
BLAST of FC899928 vs. ExPASy Swiss-Prot
Match: UBIB_CHRVO (Probable ubiquinone biosynthesis protein ubiB OS=Chromobacterium violaceum GN=ubiB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.072e-16
Identity = 39/84 (46.43%), Postives = 59/84 (70.24%), Query Frame = 3
Query:  579 LRKILVELGPAYVKIAQAVSSRPDLIPPSYLDELSLLQDQITPFSSEVAFNTIEQELGLPIDELFSEISPEPVAAASLGQVYQA 830
            +R  L  LGP +VK  Q +S+R DL+PP Y DEL+LLQD++ PF  ++A   +E+ LG  ++ELF +   +PVA+AS+ QV++A
Sbjct:   52 VRLALESLGPIFVKFGQVLSTRRDLLPPEYADELALLQDRVPPFDGDIARQVVERSLGRKVEELFVDFDLKPVASASVAQVHKA 135          
The following BLAST results are available for this feature:
BLAST of FC899928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 167
Match NameE-valueIdentityDescription
Y1181_ARATH3.948e-7270.79Uncharacterized aarF domain-containing protein kin... [more]
Y005_SYNY31.202e-2845.21Uncharacterized protein sll0005 OS=Synechocystis s... [more]
Y1919_SYNY31.570e-2842.47Uncharacterized protein slr1919 OS=Synechocystis s... [more]
Y4139_ARATH5.586e-2645.08Uncharacterized aarF domain-containing protein kin... [more]
Y1960_ARATH4.003e-2442.45Uncharacterized aarF domain-containing protein kin... [more]
Y1770_SYNY31.629e-1740.91Uncharacterized protein sll1770 OS=Synechocystis s... [more]
UBIB_PSEMY1.379e-1644.94Probable ubiquinone biosynthesis protein ubiB OS=P... [more]
UBIB_MARAV1.379e-1648.86Probable ubiquinone biosynthesis protein ubiB OS=M... [more]
UBIB_PSEP11.801e-1647.19Probable ubiquinone biosynthesis protein ubiB OS=P... [more]
UBIB_CHRVO3.072e-1646.43Probable ubiquinone biosynthesis protein ubiB OS=C... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA88AF01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA88AF01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC899928 ID=FC899928; Name=FC899928; organism=Citrus clementina; type=EST; length=835bp
AGAAATGTGGATAAAGTATAAAAAGAACCACGAAAAAATTGCCGCCCCGT
TGCCTTACACGTATCTGTCGATTTTTACACTCCCACCAAAACACCTCAGA
GCTTCGCTCTGTCTCGTCCCCTTCTTTCTCGCTGCATTCATATTTCATTT
TAATATTGTTAAATTCATCGCTCCCATTGCATTTCATCACCCGCCGCGCG
TGATTAATGTCAATGTCACTCCTCCTCCTCTTCGCGTCACCGCCAATCCC
CGCCCTTCCCGCCAATCAACAACTTAAAATCTATGGAAAGCCAATAAACC
ACCGGCACCTCAAGTCCTCGCGAGTGTCTGCCACTCGCGACGACGTCGAT
GCGTTCACCGAGAAGTCGAGCTACTTGTTCAAGCTCAGCTCGACCGACGC
CGACTCCATCGTAGAATACGATTTGAGAAAAATCGCTTCCGTTTATAGAA
GAAAGCCGTTGATTTTGCTGCGGCGAGTATTTCAAGTTGGCACGACTTTC
GGATGGTGGTTCGGGTCGCGGTTTGTTGATGAACTAATGGAGCGATCCGA
CCAGATGTTTCCGGTTAGAGCTGCCGAGTTGCGGAAGATATTGGTGGAAC
TCGGTCCAGCGTACGTCAAAATTGCTCAGGCTGTTTCTTCTCGACCTGAT
TTGATACCACCATCATATTTGGATGAGCTCTCTCTGTTGCAAGATCAGAT
AACCCCGTTTTCCTCTGAAGTTGCTTTCAATACAATAGAACAGGAACTTG
GATTACCGATAGATGAGCTTTTCTCTGAAATATCGCCAGAACCTGTAGCA
GCAGCGTCTCTTGGGCAGGTTTATCAAGCTAGACT
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