FC910031

Overview
NameFC910031
Unique NameFC910031
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC910031_ssr212 microsatellite FC910031_ssr212:212..232. BLAST: Citrus ESTs to Populus V2 proteins
Ccv1_Contig11434 contig Ccv1_Contig11434:58..782. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NDUS7_BRAOL (NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial OS=Brassica oleracea PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.664e-58
Identity = 70/79 (88.61%), Postives = 77/79 (97.47%), Query Frame = 3
Query:  285 GISKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            G+SKTAEFVISK+DD++N+ RRGSIWPM+FGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSD M+VAGTLTNKMAPA
Sbjct:   57 GLSKTAEFVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPA 135          

HSP 2 Score: 96.6709 bits (239), Expect = 1.664e-58
Identity = 47/67 (70.15%), Postives = 48/67 (71.64%), Query Frame = 1
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LRKVYDQMP PRWVI                 VVRGCDRIVPVDIYVPGCPPTAEA LYG+LQLQKK
Sbjct:  136 LRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKK 202          
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NDUS7_SOLTU (NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.812e-57
Identity = 68/79 (86.08%), Postives = 75/79 (94.94%), Query Frame = 3
Query:  285 GISKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            GISK AE+VISK+DD++N+ RRGSIWPM+FGLACCAVEMMH GAARYD DRFGIIFRPSPRQSDVM+VAGTLTNKMAPA
Sbjct:   55 GISKPAEYVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHAGAARYDFDRFGIIFRPSPRQSDVMIVAGTLTNKMAPA 133          

HSP 2 Score: 97.4413 bits (241), Expect = 1.812e-57
Identity = 48/67 (71.64%), Postives = 48/67 (71.64%), Query Frame = 1
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LRKVYDQMP PRWVI                 VVRGCDRIVPVDIYVPGCPPTAEA LYGILQLQKK
Sbjct:  134 LRKVYDQMPEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKK 200          
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NDUS7_ARATH (NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial OS=Arabidopsis thaliana GN=At5g11770 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.079e-57
Identity = 68/79 (86.08%), Postives = 75/79 (94.94%), Query Frame = 3
Query:  285 GISKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            G+SK AEFVISK+DD++N+ R GSIWPM+FGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSD M+VAGTLTNKMAPA
Sbjct:   60 GLSKAAEFVISKVDDLMNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPA 138          

HSP 2 Score: 96.6709 bits (239), Expect = 3.079e-57
Identity = 47/67 (70.15%), Postives = 48/67 (71.64%), Query Frame = 1
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LRKVYDQMP PRWVI                 VVRGCDRIVPVDIYVPGCPPTAEA LYG+LQLQKK
Sbjct:  139 LRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKK 205          
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NDUS7_RECAM (NADH-ubiquinone oxidoreductase 20 kDa subunit OS=Reclinomonas americana GN=NAD10 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 9.575e-53
Identity = 59/73 (80.82%), Postives = 71/73 (97.26%), Query Frame = 3
Query:  303 EFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            EF++SK+D++VN+ R+GS+WPM+FGLACCAVEMMH+ A+RYDLDRFGIIFRPSPRQSDVM+VAGTLTNKMAPA
Sbjct:   30 EFIVSKMDELVNWARKGSLWPMTFGLACCAVEMMHSAASRYDLDRFGIIFRPSPRQSDVMIVAGTLTNKMAPA 102          

HSP 2 Score: 93.2041 bits (230), Expect = 9.575e-53
Identity = 45/67 (67.16%), Postives = 47/67 (70.15%), Query Frame = 1
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LRKVYDQM  PRWV+                 VVRGCDRIVPVDIYVPGCPPTAEA LYG+LQLQKK
Sbjct:  103 LRKVYDQMSEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKK 169          
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NDUS7_BOVIN (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Bos taurus GN=NDUFS7 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 5.091e-51
Identity = 56/77 (72.73%), Postives = 68/77 (88.31%), Query Frame = 3
Query:  291 SKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            S   E+V++KLDD++N+ RR S+WPM+FGLACCAVEMMH  A RYD+DRFG++FR SPRQSDVM+VAGTLTNKMAPA
Sbjct:   60 SSRGEYVVAKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPA 136          

HSP 2 Score: 93.5893 bits (231), Expect = 5.091e-51
Identity = 46/67 (68.66%), Postives = 48/67 (71.64%), Query Frame = 1
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LRKVYDQMP PR+V+                 VVRGCDRIVPVDIYVPGCPPTAEA LYGILQLQKK
Sbjct:  137 LRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKK 203          
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NUOB_METFK (NADH-quinone oxidoreductase subunit B OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=nuoB PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.702e-51
Identity = 59/72 (81.94%), Postives = 65/72 (90.28%), Query Frame = 3
Query:  306 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            FV + LD V+NY R GS+WPM+FGLACCAVEMMH GAARYDLDRFGI+FRPSPRQSDVM+VAGTL NKMAPA
Sbjct:   11 FVTTTLDTVINYTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQSDVMIVAGTLVNKMAPA 82          

HSP 2 Score: 91.2781 bits (225), Expect = 8.702e-51
Identity = 44/67 (65.67%), Postives = 46/67 (68.66%), Query Frame = 1
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LRKVYDQM  PRWVI                 VVRGCDRIVPVD+YVPGCPPTAEA LYGI+QLQ K
Sbjct:   83 LRKVYDQMAEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPVDVYVPGCPPTAEALLYGIIQLQNK 149          
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NDUS7_PONPY (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Pongo pygmaeus GN=NDUFS7 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.128e-50
Identity = 57/77 (74.03%), Postives = 68/77 (88.31%), Query Frame = 3
Query:  291 SKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            S   E+V++KLDD+VN+ RR S+WPM+FGLACCAVEMMH  A RYD+DRFG++FR SPRQSDVM+VAGTLTNKMAPA
Sbjct:   57 SSRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPA 133          

HSP 2 Score: 92.0485 bits (227), Expect = 1.128e-50
Identity = 44/67 (65.67%), Postives = 48/67 (71.64%), Query Frame = 1
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LRKVYDQMP PR+V+                 VVRGCDRIVPVDIY+PGCPPTAEA LYGILQLQ+K
Sbjct:  134 LRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRK 200          
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NDUS7_PANTR (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Pan troglodytes GN=NDUFS7 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.128e-50
Identity = 57/77 (74.03%), Postives = 68/77 (88.31%), Query Frame = 3
Query:  291 SKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            S   E+V++KLDD+VN+ RR S+WPM+FGLACCAVEMMH  A RYD+DRFG++FR SPRQSDVM+VAGTLTNKMAPA
Sbjct:   57 SSRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPA 133          

HSP 2 Score: 92.0485 bits (227), Expect = 1.128e-50
Identity = 44/67 (65.67%), Postives = 48/67 (71.64%), Query Frame = 1
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LRKVYDQMP PR+V+                 VVRGCDRIVPVDIY+PGCPPTAEA LYGILQLQ+K
Sbjct:  134 LRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRK 200          
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NDUS7_HUMAN (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Homo sapiens GN=NDUFS7 PE=1 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 1.128e-50
Identity = 57/77 (74.03%), Postives = 68/77 (88.31%), Query Frame = 3
Query:  291 SKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            S   E+V++KLDD+VN+ RR S+WPM+FGLACCAVEMMH  A RYD+DRFG++FR SPRQSDVM+VAGTLTNKMAPA
Sbjct:   57 SSRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPA 133          

HSP 2 Score: 92.0485 bits (227), Expect = 1.128e-50
Identity = 44/67 (65.67%), Postives = 48/67 (71.64%), Query Frame = 1
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LRKVYDQMP PR+V+                 VVRGCDRIVPVDIY+PGCPPTAEA LYGILQLQ+K
Sbjct:  134 LRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRK 200          
BLAST of FC910031 vs. ExPASy Swiss-Prot
Match: NDUS7_GORGO (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS7 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.128e-50
Identity = 57/77 (74.03%), Postives = 68/77 (88.31%), Query Frame = 3
Query:  291 SKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPA 521
            S   E+V++KLDD+VN+ RR S+WPM+FGLACCAVEMMH  A RYD+DRFG++FR SPRQSDVM+VAGTLTNKMAPA
Sbjct:   57 SSRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPA 133          

HSP 2 Score: 92.0485 bits (227), Expect = 1.128e-50
Identity = 44/67 (65.67%), Postives = 48/67 (71.64%), Query Frame = 1
Query:  523 LRKVYDQMPNPRWVIXXXXXXXXXXXXXXXXXVVRGCDRIVPVDIYVPGCPPTAEAPLYGILQLQKK 723
            LRKVYDQMP PR+V+                 VVRGCDRIVPVDIY+PGCPPTAEA LYGILQLQ+K
Sbjct:  134 LRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRK 200          
The following BLAST results are available for this feature:
BLAST of FC910031 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDUS7_BRAOL1.664e-5888.61NADH-ubiquinone oxidoreductase 20 kDa subunit, mit... [more]
NDUS7_SOLTU1.812e-5786.08NADH-ubiquinone oxidoreductase 20 kDa subunit, mit... [more]
NDUS7_ARATH3.079e-5786.08NADH-ubiquinone oxidoreductase 20 kDa subunit, mit... [more]
NDUS7_RECAM9.575e-5380.82NADH-ubiquinone oxidoreductase 20 kDa subunit OS=R... [more]
NDUS7_BOVIN5.091e-5172.73NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NUOB_METFK8.702e-5181.94NADH-quinone oxidoreductase subunit B OS=Methyloba... [more]
NDUS7_PONPY1.128e-5074.03NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS7_PANTR1.128e-5074.03NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS7_HUMAN1.128e-5074.03NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS7_GORGO1.128e-5074.03NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA60BG09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA60BG09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC910031 ID=FC910031; Name=FC910031; organism=Citrus clementina; type=EST; length=724bp
CCATTTCTCTCTCCCTTGCCCCCGTGTGAGAAAACTAAACCAAACCCCAC
CCCCCCCCCCCACCCCACAACCCCCAAAACACAAGCCCAAAAAAAAAAAA
AAAAACTATGGCGGTACTCCCCAAAAACACTGCCCCGCCCCCCCCTCTCC
TCCTCTCCCAACGCCCCCCCTGTCTCCCCACGACCGTCCCCTCTCTCTCC
TCGGCCTCCGGCTCCTCCTCCTCCTCCTCCTCGCAGCCCACCTCCCACGC
TCGCCCTCCACCGCCCTCGACCACAAGTCCAGGCGGTATCTCAAAGACGG
CGGAATTCGTGATCTCTAAATTGGATGATGTCGTCAACTATATTCGTCGC
GGCTCCATCTGGCCCATGTCCTTCGGGCTGGCCTGCTGCGCCGTCGAGAT
GATGCACACCGGTGCTGCTCGTTACGATTTAGATCGATTCGGTATCATTT
TCAGGCCCAGCCCTCGCCAATCCGATGTCATGGTCGTAGCTGGCACACTC
ACAAACAAGATGGCCCCTGCCCCTTCGCAAGGTTTATGATCAAATGCCAA
ATCCTAGGTGGGTCATTTCTATGGGAAGCGGTGCAAATGGTGGTGGATAT
TATCATTACTCTTACTCTGTTGTTCGGGGTTGCGATAGGATTGTCCCCGT
GGACATCTATGTTCCGGGCTGCCCTCCTACTGCTGAGGCCCCACTCTATG
GAATTCTCCAACTGCAGAAAAAGA
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