FC910032

Overview
NameFC910032
Unique NameFC910032
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length857
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3433 contig Ccv1_Contig3433:1..856. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC910032 vs. ExPASy Swiss-Prot
Match: EFGM_ARATH (Elongation factor G, mitochondrial OS=Arabidopsis thaliana GN=At1g45332 PE=1 SV=1)

HSP 1 Score: 400.979 bits (1029), Expect = 4.482e-111
Identity = 202/257 (78.60%), Postives = 219/257 (85.21%), Query Frame = 3
Query:   75 MARFPRSPAPRLLYTLFXXXXXXXXXXXXXXXXAALLQGNFHLQSRQFSAGGNLARAKDDKEPWWKESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSHGE 845
            MARFP SPAP  L  LF                AALL G+F L  R FSAG     AKD+KEPWWKESM++LRNIGISAHIDSGKTTLTER+LFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAAT C WKDY++NIIDTPGHVDFT+EVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR+AFINKLDRMGADPWKVL+QAR+KLRHH AAVQVP+GLE+ FQGL+DL+ + AY+FHGS GE
Sbjct:    1 MARFPTSPAPNRLLRLFSSNKRSSSPT------AALLTGDFQL-IRHFSAGTAARVAKDEKEPWWKESMDKLRNIGISAHIDSGKTTLTERVLFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATYCTWKDYKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRVAFINKLDRMGADPWKVLNQARAKLRHHSAAVQVPIGLEENFQGLIDLIHVKAYFFHGSSGE 250          
BLAST of FC910032 vs. ExPASy Swiss-Prot
Match: EFGM_ORYSJ (Elongation factor G, mitochondrial OS=Oryza sativa subsp. japonica GN=Os03g0565500 PE=2 SV=2)

HSP 1 Score: 354.369 bits (908), Expect = 4.811e-97
Identity = 173/214 (80.84%), Postives = 195/214 (91.12%), Query Frame = 3
Query:  207 SRQFSAGGNLARAKDDKE-PWWKESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSHGE 845
            +R+  +  +  RA+D+KE   W+ESM+R+RNIGISAHIDSGKTTLTER+L+YTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAAT C W  YQ+NIIDTPGHVDFT+EVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYE+PR+AFINKLDRMGADPWKVL+QARSKLRHH AAVQVP+GLE++F+GLVDLV+L AY F G  G+
Sbjct:   40 ARRGMSSASALRARDEKEVARWRESMDRMRNIGISAHIDSGKTTLTERVLYYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATYCTWNGYQVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEIPRVAFINKLDRMGADPWKVLNQARSKLRHHNAAVQVPIGLEEEFEGLVDLVELKAYKFEGGSGQ 253          
BLAST of FC910032 vs. ExPASy Swiss-Prot
Match: EFG_LEPIN (Elongation factor G OS=Leptospira interrogans GN=fusA PE=3 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 1.555e-79
Identity = 143/190 (75.26%), Postives = 165/190 (86.84%), Query Frame = 3
Query:  273 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSHG 842
            E + + RNIGISAHIDSGKTTLTERILFYT RIH IHEVRG+DGVGAKMDSMDLERE+GITIQSAAT C WK++ INIIDTPGHVDFTVEVER+LRVLD AILVLC V GVQSQSITVDRQMRRY VPR+AFINKLDR GA+P++V++Q + KL+H+   VQ+P+GLE+  +G+VDLV + AYYF G  G
Sbjct:   12 EKLLKTRNIGISAHIDSGKTTLTERILFYTNRIHAIHEVRGKDGVGAKMDSMDLERERGITIQSAATYCQWKNHTINIIDTPGHVDFTVEVERSLRVLDSAILVLCGVAGVQSQSITVDRQMRRYNVPRVAFINKLDRTGANPFRVIEQLKEKLKHNAVPVQIPIGLENDLKGIVDLVTMKAYYFEGKDG 201          
BLAST of FC910032 vs. ExPASy Swiss-Prot
Match: EFG_LEPIC (Elongation factor G OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=fusA PE=3 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 1.555e-79
Identity = 143/190 (75.26%), Postives = 165/190 (86.84%), Query Frame = 3
Query:  273 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSHG 842
            E + + RNIGISAHIDSGKTTLTERILFYT RIH IHEVRG+DGVGAKMDSMDLERE+GITIQSAAT C WK++ INIIDTPGHVDFTVEVER+LRVLD AILVLC V GVQSQSITVDRQMRRY VPR+AFINKLDR GA+P++V++Q + KL+H+   VQ+P+GLE+  +G+VDLV + AYYF G  G
Sbjct:   12 EKLLKTRNIGISAHIDSGKTTLTERILFYTNRIHAIHEVRGKDGVGAKMDSMDLERERGITIQSAATYCQWKNHTINIIDTPGHVDFTVEVERSLRVLDSAILVLCGVAGVQSQSITVDRQMRRYNVPRVAFINKLDRTGANPFRVIEQLKEKLKHNAVPVQIPIGLENDLKGIVDLVTMKAYYFEGKDG 201          
BLAST of FC910032 vs. ExPASy Swiss-Prot
Match: EFG_LEPBL (Elongation factor G OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=fusA PE=3 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 2.031e-79
Identity = 143/190 (75.26%), Postives = 165/190 (86.84%), Query Frame = 3
Query:  273 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSHG 842
            E + + RNIGISAHIDSGKTTLTERILFYT RIH IHEVRG+DGVGAKMDSMDLERE+GITIQSAAT C WK++ INIIDTPGHVDFTVEVER+LRVLD AILVLC V GVQSQSITVDRQMRRY VPR+AFINKLDR GA+P++V++Q + KL+H+   VQ+P+GLE+  +G+VDLV + AYYF G  G
Sbjct:   12 EKLLKTRNIGISAHIDSGKTTLTERILFYTNRIHAIHEVRGKDGVGAKMDSMDLERERGITIQSAATYCQWKNHTINIIDTPGHVDFTVEVERSLRVLDSAILVLCGVAGVQSQSITVDRQMRRYNVPRVAFINKLDRTGANPFRVIEQLKEKLKHNAVPVQIPIGLENDLKGVVDLVTMKAYYFEGKDG 201          
BLAST of FC910032 vs. ExPASy Swiss-Prot
Match: EFG_LEPBJ (Elongation factor G OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=fusA PE=3 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 2.031e-79
Identity = 143/190 (75.26%), Postives = 165/190 (86.84%), Query Frame = 3
Query:  273 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSHG 842
            E + + RNIGISAHIDSGKTTLTERILFYT RIH IHEVRG+DGVGAKMDSMDLERE+GITIQSAAT C WK++ INIIDTPGHVDFTVEVER+LRVLD AILVLC V GVQSQSITVDRQMRRY VPR+AFINKLDR GA+P++V++Q + KL+H+   VQ+P+GLE+  +G+VDLV + AYYF G  G
Sbjct:   12 EKLLKTRNIGISAHIDSGKTTLTERILFYTNRIHAIHEVRGKDGVGAKMDSMDLERERGITIQSAATYCQWKNHTINIIDTPGHVDFTVEVERSLRVLDSAILVLCGVAGVQSQSITVDRQMRRYNVPRVAFINKLDRTGANPFRVIEQLKEKLKHNAVPVQIPIGLENDLKGVVDLVTMKAYYFEGKDG 201          
BLAST of FC910032 vs. ExPASy Swiss-Prot
Match: EFGM_DROER (Elongation factor G, mitochondrial OS=Drosophila erecta GN=GG23544 PE=3 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 2.245e-78
Identity = 148/221 (66.97%), Postives = 178/221 (80.54%), Query Frame = 3
Query:  180 LLQGNFHLQSRQFSAGGNLARAKDDKEPWWKESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSHG 842
            LL GN HL+ R   + G    +   K    K  +ER+RNIGISAHIDSGKTTLTERILFYTGRI E+HEVRG+D VGA MDSM+LER++GITIQSAAT   WKD  INIIDTPGHVDFTVEVERALRVLDGA+LVLC+VGGVQSQ++TV+RQM+RY VP LAFINKLDR+G++P++VL Q RSK+ H+ A +Q+P+G+E   +G+VDLV+  A YF G HG
Sbjct:    7 LLTGNNHLRIRALESLGKAGYSSHAKFSEHKP-IERIRNIGISAHIDSGKTTLTERILFYTGRIAEMHEVRGKDNVGATMDSMELERQRGITIQSAATYTLWKDTNINIIDTPGHVDFTVEVERALRVLDGAVLVLCAVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRLGSNPYRVLSQMRSKMNHNAAFIQLPIGVESNCKGIVDLVREKAIYFEGEHG 226          
BLAST of FC910032 vs. ExPASy Swiss-Prot
Match: EFGM_DROMO (Elongation factor G, mitochondrial OS=Drosophila mojavensis GN=GI17797 PE=3 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 6.532e-78
Identity = 147/222 (66.22%), Postives = 176/222 (79.28%), Query Frame = 3
Query:  180 LLQGNFHLQSRQFSAGGNLARAKDDKEPWWKES-MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSHG 842
            +L GN  L+     A   L         + +   +ER+RNIGISAHIDSGKTTLTERILFYTGRI E+HEVRG+D VGA MDSM+LER++GITIQSAAT   WKD  INIIDTPGHVDFTVEVERALRVLDGA+LVLC+VGGVQSQ++TV+RQM+RY VP LAFINKLDRMG++P++VL Q RSKL H+ A +Q+P+G+E+  +G+VDLVQ  A YF G HG
Sbjct:    7 VLNGNLPLRLSTLKAARQLQCGYSSHAKYAEHKPIERIRNIGISAHIDSGKTTLTERILFYTGRIAEMHEVRGKDNVGATMDSMELERQRGITIQSAATYTVWKDVNINIIDTPGHVDFTVEVERALRVLDGAVLVLCAVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRMGSNPYRVLSQMRSKLNHNAAFIQLPIGVENNCKGIVDLVQERAIYFEGEHG 228          
BLAST of FC910032 vs. ExPASy Swiss-Prot
Match: EFGM_DROYA (Elongation factor G, mitochondrial OS=Drosophila yakuba GN=GE18370 PE=3 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 1.114e-77
Identity = 147/221 (66.52%), Postives = 177/221 (80.09%), Query Frame = 3
Query:  180 LLQGNFHLQSRQFSAGGNLARAKDDKEPWWKESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSHG 842
            LL GN  L+ R   + G    +   K    K  +ER+RNIGISAHIDSGKTTLTERILFYTGRI E+HEVRG+D VGA MDSM+LER++GITIQSAAT   WKD  INIIDTPGHVDFTVEVERALRVLDGA+LVLC+VGGVQSQ++TV+RQM+RY VP LAFINKLDR+G++P++VL Q RSK+ H+ A +Q+P+G+E   +G+VDLV+  A YF G HG
Sbjct:    7 LLTGNITLRRRAMESLGKAGYSSHAKFSEHKP-IERIRNIGISAHIDSGKTTLTERILFYTGRIAEMHEVRGKDNVGATMDSMELERQRGITIQSAATYTLWKDTNINIIDTPGHVDFTVEVERALRVLDGAVLVLCAVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRLGSNPYRVLSQMRSKMNHNAAFIQLPIGVESNCKGIVDLVREKAIYFEGEHG 226          
BLAST of FC910032 vs. ExPASy Swiss-Prot
Match: EFGM_SCHPO (Elongation factor G, mitochondrial OS=Schizosaccharomyces pombe GN=mef1 PE=2 SV=2)

HSP 1 Score: 288.5 bits (737), Expect = 3.242e-77
Identity = 140/211 (66.35%), Postives = 169/211 (80.09%), Query Frame = 3
Query:  270 KESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW------------------KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSHGEK 848
            K+ ++++RNIGISAHIDSGKTT TER+L+YTGRI +IHEVRG+D VGAKMD M+LEREKGITIQSAAT C W                  K Y INIIDTPGH+DFT+EVERALRVLDGA+LVLC+V GVQSQ+ITVDRQMRRY VPR++F+NK+DRMGADPWKV+ Q  +KL+   AAVQ+P+G ED+ +G+VDL+Q+ A Y  GS GEK
Sbjct:   53 KKRLKQIRNIGISAHIDSGKTTFTERVLYYTGRIKDIHEVRGKDNVGAKMDFMELEREKGITIQSAATHCTWERTVDQIEANEKQKTDFEKSYNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRYNVPRISFVNKMDRMGADPWKVIQQINTKLKIPAAAVQIPIGQEDKLEGVVDLIQMRAIYNRGSKGEK 263          
The following BLAST results are available for this feature:
BLAST of FC910032 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFGM_ARATH4.482e-11178.60Elongation factor G, mitochondrial OS=Arabidopsis ... [more]
EFGM_ORYSJ4.811e-9780.84Elongation factor G, mitochondrial OS=Oryza sativa... [more]
EFG_LEPIN1.555e-7975.26Elongation factor G OS=Leptospira interrogans GN=f... [more]
EFG_LEPIC1.555e-7975.26Elongation factor G OS=Leptospira interrogans sero... [more]
EFG_LEPBL2.031e-7975.26Elongation factor G OS=Leptospira borgpetersenii s... [more]
EFG_LEPBJ2.031e-7975.26Elongation factor G OS=Leptospira borgpetersenii s... [more]
EFGM_DROER2.245e-7866.97Elongation factor G, mitochondrial OS=Drosophila e... [more]
EFGM_DROMO6.532e-7866.22Elongation factor G, mitochondrial OS=Drosophila m... [more]
EFGM_DROYA1.114e-7766.52Elongation factor G, mitochondrial OS=Drosophila y... [more]
EFGM_SCHPO3.242e-7766.35Elongation factor G, mitochondrial OS=Schizosaccha... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA27CC11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA27CC11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC910032 ID=FC910032; Name=FC910032; organism=Citrus clementina; type=EST; length=857bp
AACAGTACAACAAACCCTCGAACCCCAAACCCTTAAAAAATCTCAGGGTT
TAGGGTTTTAGATAAAAAAAAGCGATGGCTAGATTCCCACGATCTCCAGC
ACCACGTCTCCTCTACACTCTCTTCTCCTCTTCGAGAACGACACCGACCA
AATCCTCACCCCAATCTCCGTCTGCAGCCCTCCTCCAAGGAAACTTCCAC
CTCCAGTCGCGGCAGTTCTCGGCGGGAGGAAACCTCGCACGTGCGAAGGA
TGATAAGGAGCCATGGTGGAAGGAATCAATGGAGCGGCTCCGAAATATCG
GAATCTCGGCGCATATCGATTCCGGAAAAACTACACTAACCGAGCGAATT
CTGTTTTACACTGGACGGATTCACGAGATTCACGAGGTTCGAGGGCGAGA
CGGCGTCGGCGCCAAAATGGATTCTATGGATTTGGAGCGTGAGAAAGGTA
TCACAATTCAGTCAGCCGCCACTAGCTGTGCTTGGAAGGATTACCAGATT
AATATAATTGACACTCCTGGACACGTAGACTTCACAGTTGAAGTAGAAAG
GGCTTTGCGAGTTCTTGATGGCGCAATTCTTGTGCTTTGTAGTGTTGGTG
GCGTGCAAAGTCAATCAATTACCGTTGACCGGCAAATGAGGAGATACGAG
GTGCCAAGGCTGGCTTTCATTAACAAACTTGATAGAATGGGAGCTGATCC
ATGGAAAGTTTTGGATCAGGCAAGGTCTAAGCTGCGGCACCACTGTGCTG
CTGTGCAAGTTCCAATGGGATTGGAAGATCAGTTTCAGGGTCTTGTGGAC
CTTGTGCAGTTAACAGCTTATTATTTTCATGGTTCCCATGGTGAAAAAAA
TTGTCAC
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