FC910033

Overview
NameFC910033
Unique NameFC910033
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length782
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC910033_ssr143 microsatellite FC910033_ssr143:143..152. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig8349 contig Ccv1_Contig8349:67..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC910033 vs. ExPASy Swiss-Prot
Match: DNJ49_ARATH (Chaperone protein dnaJ 49 OS=Arabidopsis thaliana GN=ATJ49 PE=2 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 9.385e-41
Identity = 85/196 (43.37%), Postives = 128/196 (65.31%), Query Frame = 3
Query:  192 MDGNKDDALKCFKIGKEALESGDRARAIKFLSKARRLDPSLPVDDIISSIESDPNTNPNGPSAEPNSKPSDQSTIRHRXXXXXXXXXXXXXXXXXYTEEQIAIVRQIKKTKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITG-SDEPVYQPRTHTRAARGFN 776
            MDGNKDDA +C +I ++A+ SGD+ RA+KF++ A+RL+PSL VD+++++ ++  + + N             S++  +                 YTEE + +VR I +  D+Y ILG+E++C+V+++RK+YRKLSLKVHPDKNKAPG+EEAFK VSKAF CLS+  SR+++D  G  DE  +  R + R  R +N
Sbjct:    1 MDGNKDDASRCLRIAEDAIVSGDKERALKFINMAKRLNPSLSVDELVAACDNLDSVSRN-------------SSVSEKLKTMDGDDDKLETGKMKYTEENVDLVRNIIRNNDYYAILGLEKNCSVDEIRKAYRKLSLKVHPDKNKAPGSEEAFKKVSKAFTCLSDGNSRRQFDQVGIVDEFDHVQRRNRRPRRRYN 183          
BLAST of FC910033 vs. ExPASy Swiss-Prot
Match: DJB14_XENLA (DnaJ homolog subfamily B member 14 OS=Xenopus laevis GN=dnajb14 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.695e-35
Identity = 77/181 (42.54%), Postives = 114/181 (62.98%), Query Frame = 3
Query:  192 MDGNKDDALKCFKIGKEALESGDRARAIKFLSKARRLDPSLPVDDIISSIESDPNTNPNGPSAEPNSKPSDQSTIRHRXXXXXXXXXXXXXXXXXYTEEQIAIVRQIKKTKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEPV 734
            M+ N+D+A +C +IGK A+E+GD+ +A +F SKA RL PS     ++ ++E + +T  NGP +E  SK ++Q                       +T++Q+  V++IKK K +YE+LGV      ED++K+YRKL+LK HPDKN APGA EAFK +  A+  LSN E RK+YD+TGS++ V
Sbjct:    1 MESNRDEAERCVRIGKAAIEAGDKEKARRFFSKAERLYPSSEARVLLDALEKN-DTAGNGPQSEKMSKSTEQPKAEK---------DSSGDTGKGHTQDQVDGVQRIKKCKTYYEVLGVSPDAGEEDLKKAYRKLALKFHPDKNHAPGATEAFKKIGNAYAVLSNPEKRKQYDLTGSEDNV 171          
BLAST of FC910033 vs. ExPASy Swiss-Prot
Match: DJB12_MOUSE (DnaJ homolog subfamily B member 12 OS=Mus musculus GN=Dnajb12 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.233e-33
Identity = 78/196 (39.80%), Postives = 111/196 (56.63%), Query Frame = 3
Query:  192 MDGNKDDALKCFKIGKEALESGDRARAIKFLSKARRLDPSLPVDDIISSIESDPNTNPNGPSAEPNSKPSDQSTIRHRXXXXXXXXXXXXXXXXXYTEEQIAIVRQIKKTKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSD--EPVYQPRTHTRAARGF 773
            M+ NKD+A +C  I  +A++S    RA++FL KA+RL P+  V  +I S+   P +  + P     +  + +                       YT EQ+A V+++K+ KD+YEILGV RS + ED++K+YRKL+LK HPDKN APGA EAFKA+  A+  LSN E RK+YD  G D  +      +H    RGF
Sbjct:    1 MESNKDEAERCISIALKAIQSNQPERALRFLEKAQRLYPTPRVSALIESLNQKPQSTGDHPQPTDTTHTTTKKA-GGTETPSANGEAGGGESAKGYTSEQVAAVKRVKQCKDYYEILGVSRSASDEDLKKAYRKLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGDDKSQAARHGHSHGDFHRGF 195          
BLAST of FC910033 vs. ExPASy Swiss-Prot
Match: DJB12_HUMAN (DnaJ homolog subfamily B member 12 OS=Homo sapiens GN=DNAJB12 PE=1 SV=3)

HSP 1 Score: 142.124 bits (357), Expect = 3.233e-33
Identity = 77/183 (42.08%), Postives = 108/183 (59.02%), Query Frame = 3
Query:  192 MDGNKDDALKCFKIGKEALESGDRARAIKFLSKARRLDPSLPVDDIISSIESDPNTNPNGPSAEPNSKPSDQSTIRHRXXXXXXXXXXXXXXXXX----YTEEQIAIVRQIKKTKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSDE 728
            M+ NKD+A +C  I  +A++S    RA++FL KA+RL P+  V  +I S+   P T  + P       P+D +   HR                     YT EQ+A V+++K+ KD+YEILGV R  + ED++K+YR+L+LK HPDKN APGA EAFKA+  A+  LSN E RK+YD  G D+
Sbjct:    1 MESNKDEAERCISIALKAIQSNQPDRALRFLEKAQRLYPTPRVRALIESLNQKPQTAGDQPP------PTDTTHATHRKAGGTDAPSANGEAGGESTKGYTAEQVAAVKRVKQCKDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGDDK 177          
BLAST of FC910033 vs. ExPASy Swiss-Prot
Match: DJB14_XENTR (DnaJ homolog subfamily B member 14 OS=Xenopus tropicalis GN=dnajb14 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.223e-33
Identity = 74/179 (41.34%), Postives = 111/179 (62.01%), Query Frame = 3
Query:  192 MDGNKDDALKCFKIGKEALESGDRARAIKFLSKARRLDPSLPVDDIISSIESDPNTNPNGPSAEPNSKPSDQSTIRHRXXXXXXXXXXXXXXXXXYTEEQIAIVRQIKKTKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSDE 728
            M+ N+D+A +C +I K A+E+GD+ +A +FLSKA RL PS     ++ + E + +T  NGP +   +K ++Q                       +T++Q+  V++IKK K +YE+LGV      ED++K+YRKL+LK HPDKN APGA EAFK +  A+  LSN E RK+YD+TGS++
Sbjct:    1 MESNRDEAERCVRIAKAAIEAGDKEKAKRFLSKAERLYPSSEARALLQAFEKN-DTAGNGPQSAKMAKGTEQPKAEK-----DSNASASSDTGKGHTQDQLDGVQRIKKCKTYYEVLGVSTDAGEEDLKKAYRKLALKFHPDKNHAPGATEAFKKIGNAYAVLSNPEKRKQYDLTGSED 173          
BLAST of FC910033 vs. ExPASy Swiss-Prot
Match: DJB12_BOVIN (DnaJ homolog subfamily B member 12 OS=Bos taurus GN=DNAJB12 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.203e-33
Identity = 75/179 (41.90%), Postives = 103/179 (57.54%), Query Frame = 3
Query:  192 MDGNKDDALKCFKIGKEALESGDRARAIKFLSKARRLDPSLPVDDIISSIESDPNTNPNGPSAEPNSKPSDQSTIRHRXXXXXXXXXXXXXXXXXYTEEQIAIVRQIKKTKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSDE 728
            M+ NKD+A +C  I  +A++S    RA++FL KA+RL P+  V  +I S+   P   P G   +P                              YT EQ+A V+++K+ KD+YEILGV R  + ED++K+YRKL+LK HPDKN APGA EAFKA+  A+  LSN E RK+YD  G D+
Sbjct:    1 MESNKDEAERCISIALKAIQSNQPDRALRFLEKAQRLYPTPRVHALIESLNQKPQ--PAGDQPQPTEATHTTHRKAAGANTASANGEAGGESTKGYTAEQVAAVKRVKQCKDYYEILGVSRGASDEDLKKAYRKLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGDDK 177          
BLAST of FC910033 vs. ExPASy Swiss-Prot
Match: DJB14_HUMAN (DnaJ homolog subfamily B member 14 OS=Homo sapiens GN=DNAJB14 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.575e-32
Identity = 73/179 (40.78%), Postives = 106/179 (59.22%), Query Frame = 3
Query:  192 MDGNKDDALKCFKIGKEALESGDRARAIKFLSKARRLDPSLPVDDIISSIESDPNTNPNGPSAEPNSKPSDQSTIRHRXXXXXXXXXXXXXXXXXYTEEQIAIVRQIKKTKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSDE 728
            M+GN+D+A KC +I +EAL +G+R +A +FL KA +L P      ++  I  + +T  N P     S   DQS    +                 YT++Q+  V  I K K++YE+LGV +    ED++K+YRKL+LK HPDKN APGA +AFK +  A+  LSN E RK+YD+TG++E
Sbjct:    1 MEGNRDEAEKCVEIAREALNAGNREKAQRFLQKAEKLYPLPSARALLEIIMKNGSTAGNSPHCRKPSGSGDQS----KPNCTKDSTSGSGEGGKGYTKDQVDGVLSINKCKNYYEVLGVTKDAGDEDLKKAYRKLALKFHPDKNHAPGATDAFKKIGNAYAVLSNPEKRKQYDLTGNEE 175          
BLAST of FC910033 vs. ExPASy Swiss-Prot
Match: DJB14_BOVIN (DnaJ homolog subfamily B member 14 OS=Bos taurus GN=DNAJB14 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.575e-32
Identity = 74/189 (39.15%), Postives = 109/189 (57.67%), Query Frame = 3
Query:  192 MDGNKDDALKCFKIGKEALESGDRARAIKFLSKARRLDPSLPVDDIISSIESDPNTNPNGPSAEPNSKPSDQSTIRHRXXXXXXXXXXXXXXXXXYTEEQIAIVRQIKKTKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEPVYQPRTHTR 758
            M+GN+D+A KC +I +EAL +G+R +A +FL KA +L P      ++  I  + +T  N P     S   DQS    +                 YT++Q+  V  I K K++YE+LGV +    ED++K+YRKL+LK HPDKN APGA +AFK +  A+  LSN E RK+YD+TG++E     + + R
Sbjct:    1 MEGNRDEAEKCVEIAREALNAGNREKAQRFLQKAEKLYPLPSARALLEIIMKNGSTAGNSPHCRKPSGGGDQS----KPNCTKDSSSGSGESGKGYTKDQVDGVLSINKCKNYYEVLGVTKDAGDEDLKKAYRKLALKFHPDKNHAPGATDAFKKIGNAYAVLSNPEKRKQYDLTGNEEQACNQQNNGR 185          
BLAST of FC910033 vs. ExPASy Swiss-Prot
Match: DJB14_PONAB (DnaJ homolog subfamily B member 14 OS=Pongo abelii GN=DNAJB14 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.358e-31
Identity = 73/179 (40.78%), Postives = 105/179 (58.66%), Query Frame = 3
Query:  192 MDGNKDDALKCFKIGKEALESGDRARAIKFLSKARRLDPSLPVDDIISSIESDPNTNPNGPSAEPNSKPSDQSTIRHRXXXXXXXXXXXXXXXXXYTEEQIAIVRQIKKTKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSDE 728
            M+GN+D+A KC +I +EAL +G+R +A +FL KA +L P      ++  I  + +T  N P     S   DQS    +                 YT++Q+  V  I K K+ YE+LGV +    ED++K+YRKL+LK HPDKN APGA +AFK +  A+  LSN E RK+YD+TG++E
Sbjct:    1 MEGNRDEAEKCVEIAREALNAGNREKAQRFLQKAEKLYPLPSARALLEIIMKNGSTAGNSPHCRKPSGSGDQS----KPNCTKDSTSGSGEGGKGYTKDQVDGVLSINKCKNCYEVLGVTKDAGDEDLKKAYRKLALKFHPDKNHAPGATDAFKKIGNAYAVLSNPEKRKQYDLTGNEE 175          
BLAST of FC910033 vs. ExPASy Swiss-Prot
Match: DJB14_MOUSE (DnaJ homolog subfamily B member 14 OS=Mus musculus GN=Dnajb14 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.741e-31
Identity = 72/179 (40.22%), Postives = 105/179 (58.66%), Query Frame = 3
Query:  192 MDGNKDDALKCFKIGKEALESGDRARAIKFLSKARRLDPSLPVDDIISSIESDPNTNPNGPSAEPNSKPSDQSTIRHRXXXXXXXXXXXXXXXXXYTEEQIAIVRQIKKTKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSDE 728
            M+GN+D+A KC +I +EAL +G+R +A +FL KA +L P      ++  I  + +T  +          SDQS    +                 YT++Q+  V  I K K++YE+LGV +    ED++K+YRKL+LK HPDKN APGA +AFK +  A+  LSN E RK+YD+TGS+E
Sbjct:    1 MEGNRDEAEKCVQIAREALSAGNRDKAQRFLQKAEKLYPLPAARALLEIIMKNGSTAGSSTHCRKPPGSSDQS----KPSCGKDGTSGAGEGGKVYTKDQVEGVLSINKCKNYYEVLGVTKDAGDEDLKKAYRKLALKFHPDKNHAPGATDAFKKIGNAYAVLSNPEKRKQYDLTGSEE 175          
The following BLAST results are available for this feature:
BLAST of FC910033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 287
Match NameE-valueIdentityDescription
DNJ49_ARATH9.385e-4143.37Chaperone protein dnaJ 49 OS=Arabidopsis thaliana ... [more]
DJB14_XENLA7.695e-3542.54DnaJ homolog subfamily B member 14 OS=Xenopus laev... [more]
DJB12_MOUSE3.233e-3339.80DnaJ homolog subfamily B member 12 OS=Mus musculus... [more]
DJB12_HUMAN3.233e-3342.08DnaJ homolog subfamily B member 12 OS=Homo sapiens... [more]
DJB14_XENTR4.223e-3341.34DnaJ homolog subfamily B member 14 OS=Xenopus trop... [more]
DJB12_BOVIN7.203e-3341.90DnaJ homolog subfamily B member 12 OS=Bos taurus G... [more]
DJB14_HUMAN3.575e-3240.78DnaJ homolog subfamily B member 14 OS=Homo sapiens... [more]
DJB14_BOVIN3.575e-3239.15DnaJ homolog subfamily B member 14 OS=Bos taurus G... [more]
DJB14_PONAB1.358e-3140.78DnaJ homolog subfamily B member 14 OS=Pongo abelii... [more]
DJB14_MOUSE6.741e-3140.22DnaJ homolog subfamily B member 14 OS=Mus musculus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA15AG10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA15AG10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC910033 ID=FC910033; Name=FC910033; organism=Citrus clementina; type=EST; length=782bp
CTTCTCCTCCTTACCCTCAACTTACGACACCACCCCCTGAATCCTTGAAC
CCCTCAAATTCAAATTCTTATGTCAGATCCATTATATTAACACTATTATG
ATTCGCAATCGGCAATAAATTAGGATTAGGGTTTGTGATATTTATATATA
TATTGTGTTATTTGTTCTTGTGTGGTTTTTCAATTTTCATCATGGATGGG
AATAAAGATGACGCCTTGAAATGTTTCAAAATCGGCAAAGAAGCGCTAGA
ATCAGGCGATCGAGCGCGTGCGATCAAATTTCTGTCCAAGGCTCGCCGCC
TCGATCCTTCTCTTCCGGTTGACGACATCATCTCATCCATCGAGTCCGAC
CCCAACACAAACCCTAACGGCCCGTCCGCAGAGCCCAATTCAAAGCCGTC
CGATCAATCGACGATCCGACACCGGGGCCCATCAACTGGCGCGTCTCCGT
CAGCTTCTTCTTCGACCTCTCCGGCGTACACCGAAGAGCAAATCGCGATC
GTGAGACAGATTAAGAAAACGAAAGATTTTTACGAAATCCTAGGGGTTGA
AAGATCTTGTACGGTCGAAGATGTACGGAAATCTTATAGAAAATTATCGC
TGAAGGTTCATCCCGATAAGAACAAAGCTCCAGGCGCCGAAGAAGCCTTT
AAAGCGGTATCAAAGGCGTTTCAGTGTTTGAGCAACGATGAGAGTCGGAA
AAAATATGATATTACTGGGTCAGATGAGCCCGTTTATCAGCCACGGACTC
ATACTCGGGCCGCCCGTGGGTTTAACGGGTTT
back to top