FC910034

Overview
NameFC910034
Unique NameFC910034
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length834
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3122 contig Ccv1_Contig3122:1..835. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC910034 vs. ExPASy Swiss-Prot
Match: SGT1_ARATH (Protein SGT1 homolog At5g65490 OS=Arabidopsis thaliana GN=At5g65490 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 8.302e-82
Identity = 82/129 (63.57%), Postives = 102/129 (79.07%), Query Frame = 2
Query:  119 SLSHKMAATRPRLPDDTVFYSIYPDSTLSTSSLQSIHLQILDHLSPLISDYIWQHEPFNLSLS--------TTAIPHLHGHLRFGDNLEDEWFTVFLLFEISRAFHALSIRVWDSDGEFLLIEAAFHLP 481
            S S   + T  RL D+TVF+S++PDS+LS+++LQS+HL+I+D +SP  S YIWQHEPF+LS++         TAIPHLHG L++GDNLEDEWF VFLLF IS AF + SIRVWD+DGEFLLIEAAFHLP
Sbjct:    5 SSSPFFSETTSRLQDETVFFSLFPDSSLSSAALQSLHLEIIDFVSPFTSPYIWQHEPFSLSIALSSSCACTNTAIPHLHGKLKYGDNLEDEWFAVFLLFRISAAFPSNSIRVWDTDGEFLLIEAAFHLP 133          

HSP 2 Score: 155.992 bits (393), Expect = 8.302e-82
Identity = 74/119 (62.18%), Postives = 92/119 (77.31%), Query Frame = 1
Query:  478 PRWLNPDNSENRLFIRRGDLHIIPKTSLPDPTLVDSLNFLINNENESRASEAIQNAVKRKISDYPHRAKRNMHNXXXXXXXXXXXXLKHEPCLISLAVEGFYDRDIDTMKYAAXMERFL 834
            PRWLNP+ S NR+FIR GDLHI+P++ LPDP+LV SL FLI   NESRAS+++Q+A+K +ISDYP RA RNMH             ++HEP LISLAVEGFYDRD+D+MK+AA ME+FL
Sbjct:  133 PRWLNPETSLNRVFIRGGDLHIVPRSRLPDPSLVASLRFLIERGNESRASDSVQSALKNRISDYPERAWRNMHRVRVRVPVSVAQVIRHEPFLISLAVEGFYDRDMDSMKHAAKMEKFL 251          
BLAST of FC910034 vs. ExPASy Swiss-Prot
Match: SGT1_MOUSE (Protein SGT1 homolog OS=Mus musculus GN=Ecd PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 8.044e-35
Identity = 49/116 (42.24%), Postives = 71/116 (61.21%), Query Frame = 2
Query:  161 DDTVFYSIY--PDSTLSTSS----LQSIHLQILDHLSPLISDYIWQHEPFNLSLSTT--AIP-HLHGHLRFGDNLEDEWFTVFLLFEISRAFHALSIRVWDSDGEFLLIEAAFHLP 481
            +D V Y ++  PD    T      LQ    +I+   +P++  YIWQ++PFNL        +P H++G  +FGDN+EDEWF V+++ +I++ F  L  RV D+DGEFLLIEAA  LP
Sbjct:   11 EDAVEYHLFLIPDKARGTEEHREILQKYIERIMTQFAPILVPYIWQNQPFNLKYKPAKGGVPAHMYGMTKFGDNIEDEWFIVYVIKQITKEFPELVARVEDNDGEFLLIEAADFLP 126          

HSP 2 Score: 78.5666 bits (192), Expect = 8.044e-35
Identity = 44/128 (34.38%), Postives = 66/128 (51.56%), Query Frame = 1
Query:  478 PRWLNPDNSENRLFIRRGDLHIIPKTS---------LPDPTLVDSLNFLINNENESRASEAIQNAVKRKISDYPHRAKRNMHNXXXXXXXXXXXXLKHEPCLISLAVEGFYDRDIDTMKYAAXMERFL 834
            P+WL+PDNS NR+F   G+L IIP            +  PT+  +L+ +  +     ASE+IQ AV R++S YP R + ++H             LK +P L+S AV+ FY RD   ++     + FL
Sbjct:  126 PKWLDPDNSANRVFFHHGELCIIPVPRKSERIPWLPMTPPTIQQALSIISAHPEAVLASESIQAAVDRRVSGYPERVEASLHRAHCFLPAGIVAVLKQQPRLLSAAVQAFYLRDPIDLRACRVFKTFL 253          
BLAST of FC910034 vs. ExPASy Swiss-Prot
Match: SGT1_HUMAN (Protein SGT1 OS=Homo sapiens GN=ECD PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.514e-33
Identity = 48/116 (41.38%), Postives = 72/116 (62.07%), Query Frame = 2
Query:  161 DDTVFYSIY--PDSTLSTSS----LQSIHLQILDHLSPLISDYIWQHEPFNLSLSTT--AIP-HLHGHLRFGDNLEDEWFTVFLLFEISRAFHALSIRVWDSDGEFLLIEAAFHLP 481
            +DTV Y ++  PD +  +      LQ    +I+   +P++  YIWQ++PFNL        +P H+ G  +FGDN+EDEWF V+++ +I++ F  L  R+ D+DGEFLLIEAA  LP
Sbjct:   11 EDTVEYCLFLIPDESRDSDKHKEILQKYIERIITRFAPMLVPYIWQNQPFNLKYKPGKGGVPAHMFGVTKFGDNIEDEWFIVYVIKQITKEFPELVARIEDNDGEFLLIEAADFLP 126          

HSP 2 Score: 74.3294 bits (181), Expect = 5.514e-33
Identity = 43/128 (33.59%), Postives = 68/128 (53.12%), Query Frame = 1
Query:  478 PRWLNPDNSENRLFIRRGDLHIIP-------KTSLPD--PTLVDSLNFLINNENESRASEAIQNAVKRKISDYPHRAKRNMHNXXXXXXXXXXXXLKHEPCLISLAVEGFYDRDIDTMKYAAXMERFL 834
            P+WL+P+NS NR+F   G+L IIP       ++ LP   PT+  +LN +  +  +  ASE+I+ AV R+I  YP + + ++H             LK  P L++ AV+ FY RD   ++     + FL
Sbjct:  126 PKWLDPENSTNRVFFCHGELCIIPAPRKSGAESWLPTTPPTIPQALNIITAHSEKILASESIRAAVNRRIRGYPEKIQASLHRAHCFLPAGIVAVLKQRPRLVAAAVQAFYLRDPIDLRACRVFKTFL 253          
BLAST of FC910034 vs. ExPASy Swiss-Prot
Match: SGT1_DICDI (Protein sgt1 OS=Dictyostelium discoideum GN=ecd PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.044e-23
Identity = 35/83 (42.17%), Postives = 54/83 (65.06%), Query Frame = 2
Query:  260 ISDYIWQHEPFNLSL--------STTAIP-HLHGHLRFGDNLEDEWFTVFLLFEISRAFHALSIRVWDSDGEFLLIEAAFHLP 481
            I DYIWQ EPFNL +            +P H +G+ +F ++++DEWF V++L E+++ F +L + + D+DGEF+LIE A  LP
Sbjct:   88 IKDYIWQKEPFNLKIYDHKKKQQQQQQLPIHFYGNTKFEESIDDEWFIVYILLELTKKFQSLIVSIKDNDGEFILIETAQALP 170          

HSP 2 Score: 55.8398 bits (133), Expect = 1.044e-23
Identity = 37/133 (27.82%), Postives = 61/133 (45.86%), Query Frame = 1
Query:  478 PRWLNPDNSENRLFIRRGDLHIIPKTSLPDPTLVDSLNFLINNENE----SRASEAIQNAVKRKISDYPHRAKRNMHN-----------XXXXXXXXXXXXLKHEPCLISLAVEGFYDRDIDTMKYAAXMERF 831
            P+W+ P NS NR++++ G++HIIP  S  DP+ +D++ + ++        S +S  I   V  +I++      +  +N                       L   P LIS     FY+RD D MK  + M+RF
Sbjct:  170 PKWIKPTNSNNRVYLKNGEIHIIPLPS--DPSQLDTIPYKMDTNTALSILSSSSNNIITKVSNEINEILKNRLKRFYNGEYFLKDQNQIKLAAIPIEIGYLLNQYPQLISDITTTFYNRDSDDMKTISTMKRF 300          
BLAST of FC910034 vs. ExPASy Swiss-Prot
Match: SGT1_SCHPO (Protein sgt1 OS=Schizosaccharomyces pombe GN=sgt1 PE=2 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 6.037e-16
Identity = 33/73 (45.21%), Postives = 46/73 (63.01%), Query Frame = 2
Query:  266 DYIWQHEPFNLS-LSTTAIPHLHGHLRFGDNLEDEWFTVFLLFEISRAFHALSIRVWDSDGEFLLIEAAFHLP 481
            ++IWQ+E  NL  +       + G   FGD ++DEW+ V+LL E S+A  +  +R+ D DGEFLLIEAA  LP
Sbjct:   57 EHIWQNEELNLQRVEYQGKDCILGITNFGDCIDDEWYIVWLLREASKAVKSAFVRIIDEDGEFLLIEAALSLP 129          

HSP 2 Score: 41.5874 bits (96), Expect = 6.037e-16
Identity = 29/125 (23.20%), Postives = 55/125 (44.00%), Query Frame = 1
Query:  478 PRWLNPDNSENRLFIRRGDLHI-------IPKTSLPDPTLVDSLNFLINNENESRASEAIQNAVKRKISDYPHRAKRNMHNXXXXXXXXXXXXLKHEPCLISLAVEGFYDRDIDTMKYAAXMERF 831
            P+W++ DNS+ R++I  G++ I       + K +   P   +   F I++ +    S  + +++ +++  +P  A   +               K++  LIS AV  FY RD     Y   M +F
Sbjct:  129 PKWIDEDNSDYRVWIHNGEVIILRPEDEFLKKMNRCPPLTREQAIFQISSGSNLYTSREVNDSISQRLKKFPKAANVKLRAICTVPRKIVHVLQKNKN-LISSAVNAFYYRDPIDENYCDRMSKF 252          
BLAST of FC910034 vs. ExPASy Swiss-Prot
Match: SGT1_DROME (Protein SGT1 homolog ecdysoneless OS=Drosophila melanogaster GN=ecd PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.755e-14
Identity = 54/159 (33.96%), Postives = 76/159 (47.80%), Query Frame = 2
Query:  161 DDTVFYSIYP---DSTLSTSSLQSIHLQILDHLSPLISD------YIWQHEPFNLSLSTTAI---------------------PHLHGHLRFGDNLEDEWFTVFLLFEISRAFHALSIRVWDSDGEFLLIEAAFHLPA-GSTQTTPKTVCLFAAVISIL 544
            +D V Y I+P   D+     +L+ + LQI + +S ++ +      Y+W  + F L +                          PH HG   +GDN+ DEWF V+LL EI+RA      RV DSDGEFLLIEAA  LP   S +T  + V L    + +L
Sbjct:   15 EDFVEYYIFPKIPDNVQDEGALRKLMLQIRNEISAIVREKSLERSYLWHKDEFQLQVRLGGAEERLLNEETNPEEEAELGDLPPHFHGVTHYGDNISDEWFVVYLLTEITRARGDCIARVSDSDGEFLLIEAADALPDWASPETCEQRVYLVGGHLQLL 173          
The following BLAST results are available for this feature:
BLAST of FC910034 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
SGT1_ARATH8.302e-8263.57Protein SGT1 homolog At5g65490 OS=Arabidopsis thal... [more]
SGT1_MOUSE8.044e-3542.24Protein SGT1 homolog OS=Mus musculus GN=Ecd PE=2 S... [more]
SGT1_HUMAN5.514e-3341.38Protein SGT1 OS=Homo sapiens GN=ECD PE=1 SV=1[more]
SGT1_DICDI1.044e-2342.17Protein sgt1 OS=Dictyostelium discoideum GN=ecd PE... [more]
SGT1_SCHPO6.037e-1645.21Protein sgt1 OS=Schizosaccharomyces pombe GN=sgt1 ... [more]
SGT1_DROME3.755e-1433.96Protein SGT1 homolog ecdysoneless OS=Drosophila me... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA22CB01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA22CB01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC910034 ID=FC910034; Name=FC910034; organism=Citrus clementina; type=EST; length=834bp
AAAAATATTCTGGAAGAGACGTTGTTTTTCGAAAGAGGTGGGAATTTCCC
CGAACAAAACCCGTTCTTCTGCGTCTGGCGCTAAAACCCAAGAAGATCAA
AACTGAAAAATAGTGGCATCACTCTCTCACAAAATGGCAGCAACACGGCC
ACGTCTTCCAGACGACACCGTATTCTACTCTATATACCCAGACTCCACTC
TTTCCACTTCATCTCTCCAATCCATCCACCTCCAAATCCTCGACCATCTC
TCTCCTCTAATTTCCGATTACATCTGGCAACACGAGCCCTTCAATCTCTC
CCTCTCCACCACCGCCATCCCTCACCTCCACGGCCACCTCCGCTTCGGAG
ATAATCTCGAAGACGAGTGGTTCACCGTTTTCTTACTCTTCGAAATCTCC
CGCGCCTTTCATGCTTTATCTATCCGCGTTTGGGACTCCGACGGCGAGTT
TTTACTCATAGAAGCCGCCTTCCACCTCCCCGCTGGCTCAACCCAGACAA
CTCCGAAAACCGTTTGTTTATTCGCCGCGGTGATCTCCATATTATTCCCA
AAACCTCCCTACCCGACCCTACATTAGTTGATAGTTTAAATTTTTTAATT
AACAATGAGAACGAATCGCGTGCTTCTGAAGCCATTCAAAACGCAGTCAA
GAGAAAGATTTCTGACTATCCTCATCGAGCTAAAAGGAATATGCATAACG
TTAGGGTTAGGGTTCCGGTGTCGGTGGCTCAGGTGCTGAAGCACGAGCCT
TGTTTGATTTCGCTTGCCGTAGAGGGGTTTTATGATAGAGATATTGATAC
CATGAAGTACGCGGCGAANATGGAGAGGTTTTTG
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