FC910034
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC910034 vs. ExPASy Swiss-Prot
Match: SGT1_ARATH (Protein SGT1 homolog At5g65490 OS=Arabidopsis thaliana GN=At5g65490 PE=2 SV=1) HSP 1 Score: 170.244 bits (430), Expect = 8.302e-82 Identity = 82/129 (63.57%), Postives = 102/129 (79.07%), Query Frame = 2 Query: 119 SLSHKMAATRPRLPDDTVFYSIYPDSTLSTSSLQSIHLQILDHLSPLISDYIWQHEPFNLSLS--------TTAIPHLHGHLRFGDNLEDEWFTVFLLFEISRAFHALSIRVWDSDGEFLLIEAAFHLP 481 S S + T RL D+TVF+S++PDS+LS+++LQS+HL+I+D +SP S YIWQHEPF+LS++ TAIPHLHG L++GDNLEDEWF VFLLF IS AF + SIRVWD+DGEFLLIEAAFHLP Sbjct: 5 SSSPFFSETTSRLQDETVFFSLFPDSSLSSAALQSLHLEIIDFVSPFTSPYIWQHEPFSLSIALSSSCACTNTAIPHLHGKLKYGDNLEDEWFAVFLLFRISAAFPSNSIRVWDTDGEFLLIEAAFHLP 133 HSP 2 Score: 155.992 bits (393), Expect = 8.302e-82 Identity = 74/119 (62.18%), Postives = 92/119 (77.31%), Query Frame = 1 Query: 478 PRWLNPDNSENRLFIRRGDLHIIPKTSLPDPTLVDSLNFLINNENESRASEAIQNAVKRKISDYPHRAKRNMHNXXXXXXXXXXXXLKHEPCLISLAVEGFYDRDIDTMKYAAXMERFL 834 PRWLNP+ S NR+FIR GDLHI+P++ LPDP+LV SL FLI NESRAS+++Q+A+K +ISDYP RA RNMH ++HEP LISLAVEGFYDRD+D+MK+AA ME+FL Sbjct: 133 PRWLNPETSLNRVFIRGGDLHIVPRSRLPDPSLVASLRFLIERGNESRASDSVQSALKNRISDYPERAWRNMHRVRVRVPVSVAQVIRHEPFLISLAVEGFYDRDMDSMKHAAKMEKFL 251
BLAST of FC910034 vs. ExPASy Swiss-Prot
Match: SGT1_MOUSE (Protein SGT1 homolog OS=Mus musculus GN=Ecd PE=2 SV=2) HSP 1 Score: 90.5077 bits (223), Expect = 8.044e-35 Identity = 49/116 (42.24%), Postives = 71/116 (61.21%), Query Frame = 2 Query: 161 DDTVFYSIY--PDSTLSTSS----LQSIHLQILDHLSPLISDYIWQHEPFNLSLSTT--AIP-HLHGHLRFGDNLEDEWFTVFLLFEISRAFHALSIRVWDSDGEFLLIEAAFHLP 481 +D V Y ++ PD T LQ +I+ +P++ YIWQ++PFNL +P H++G +FGDN+EDEWF V+++ +I++ F L RV D+DGEFLLIEAA LP Sbjct: 11 EDAVEYHLFLIPDKARGTEEHREILQKYIERIMTQFAPILVPYIWQNQPFNLKYKPAKGGVPAHMYGMTKFGDNIEDEWFIVYVIKQITKEFPELVARVEDNDGEFLLIEAADFLP 126 HSP 2 Score: 78.5666 bits (192), Expect = 8.044e-35 Identity = 44/128 (34.38%), Postives = 66/128 (51.56%), Query Frame = 1 Query: 478 PRWLNPDNSENRLFIRRGDLHIIPKTS---------LPDPTLVDSLNFLINNENESRASEAIQNAVKRKISDYPHRAKRNMHNXXXXXXXXXXXXLKHEPCLISLAVEGFYDRDIDTMKYAAXMERFL 834 P+WL+PDNS NR+F G+L IIP + PT+ +L+ + + ASE+IQ AV R++S YP R + ++H LK +P L+S AV+ FY RD ++ + FL Sbjct: 126 PKWLDPDNSANRVFFHHGELCIIPVPRKSERIPWLPMTPPTIQQALSIISAHPEAVLASESIQAAVDRRVSGYPERVEASLHRAHCFLPAGIVAVLKQQPRLLSAAVQAFYLRDPIDLRACRVFKTFL 253
BLAST of FC910034 vs. ExPASy Swiss-Prot
Match: SGT1_HUMAN (Protein SGT1 OS=Homo sapiens GN=ECD PE=1 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 5.514e-33 Identity = 48/116 (41.38%), Postives = 72/116 (62.07%), Query Frame = 2 Query: 161 DDTVFYSIY--PDSTLSTSS----LQSIHLQILDHLSPLISDYIWQHEPFNLSLSTT--AIP-HLHGHLRFGDNLEDEWFTVFLLFEISRAFHALSIRVWDSDGEFLLIEAAFHLP 481 +DTV Y ++ PD + + LQ +I+ +P++ YIWQ++PFNL +P H+ G +FGDN+EDEWF V+++ +I++ F L R+ D+DGEFLLIEAA LP Sbjct: 11 EDTVEYCLFLIPDESRDSDKHKEILQKYIERIITRFAPMLVPYIWQNQPFNLKYKPGKGGVPAHMFGVTKFGDNIEDEWFIVYVIKQITKEFPELVARIEDNDGEFLLIEAADFLP 126 HSP 2 Score: 74.3294 bits (181), Expect = 5.514e-33 Identity = 43/128 (33.59%), Postives = 68/128 (53.12%), Query Frame = 1 Query: 478 PRWLNPDNSENRLFIRRGDLHIIP-------KTSLPD--PTLVDSLNFLINNENESRASEAIQNAVKRKISDYPHRAKRNMHNXXXXXXXXXXXXLKHEPCLISLAVEGFYDRDIDTMKYAAXMERFL 834 P+WL+P+NS NR+F G+L IIP ++ LP PT+ +LN + + + ASE+I+ AV R+I YP + + ++H LK P L++ AV+ FY RD ++ + FL Sbjct: 126 PKWLDPENSTNRVFFCHGELCIIPAPRKSGAESWLPTTPPTIPQALNIITAHSEKILASESIRAAVNRRIRGYPEKIQASLHRAHCFLPAGIVAVLKQRPRLVAAAVQAFYLRDPIDLRACRVFKTFL 253
BLAST of FC910034 vs. ExPASy Swiss-Prot
Match: SGT1_DICDI (Protein sgt1 OS=Dictyostelium discoideum GN=ecd PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 1.044e-23 Identity = 35/83 (42.17%), Postives = 54/83 (65.06%), Query Frame = 2 Query: 260 ISDYIWQHEPFNLSL--------STTAIP-HLHGHLRFGDNLEDEWFTVFLLFEISRAFHALSIRVWDSDGEFLLIEAAFHLP 481 I DYIWQ EPFNL + +P H +G+ +F ++++DEWF V++L E+++ F +L + + D+DGEF+LIE A LP Sbjct: 88 IKDYIWQKEPFNLKIYDHKKKQQQQQQLPIHFYGNTKFEESIDDEWFIVYILLELTKKFQSLIVSIKDNDGEFILIETAQALP 170 HSP 2 Score: 55.8398 bits (133), Expect = 1.044e-23 Identity = 37/133 (27.82%), Postives = 61/133 (45.86%), Query Frame = 1 Query: 478 PRWLNPDNSENRLFIRRGDLHIIPKTSLPDPTLVDSLNFLINNENE----SRASEAIQNAVKRKISDYPHRAKRNMHN-----------XXXXXXXXXXXXLKHEPCLISLAVEGFYDRDIDTMKYAAXMERF 831 P+W+ P NS NR++++ G++HIIP S DP+ +D++ + ++ S +S I V +I++ + +N L P LIS FY+RD D MK + M+RF Sbjct: 170 PKWIKPTNSNNRVYLKNGEIHIIPLPS--DPSQLDTIPYKMDTNTALSILSSSSNNIITKVSNEINEILKNRLKRFYNGEYFLKDQNQIKLAAIPIEIGYLLNQYPQLISDITTTFYNRDSDDMKTISTMKRF 300
BLAST of FC910034 vs. ExPASy Swiss-Prot
Match: SGT1_SCHPO (Protein sgt1 OS=Schizosaccharomyces pombe GN=sgt1 PE=2 SV=1) HSP 1 Score: 63.929 bits (154), Expect = 6.037e-16 Identity = 33/73 (45.21%), Postives = 46/73 (63.01%), Query Frame = 2 Query: 266 DYIWQHEPFNLS-LSTTAIPHLHGHLRFGDNLEDEWFTVFLLFEISRAFHALSIRVWDSDGEFLLIEAAFHLP 481 ++IWQ+E NL + + G FGD ++DEW+ V+LL E S+A + +R+ D DGEFLLIEAA LP Sbjct: 57 EHIWQNEELNLQRVEYQGKDCILGITNFGDCIDDEWYIVWLLREASKAVKSAFVRIIDEDGEFLLIEAALSLP 129 HSP 2 Score: 41.5874 bits (96), Expect = 6.037e-16 Identity = 29/125 (23.20%), Postives = 55/125 (44.00%), Query Frame = 1 Query: 478 PRWLNPDNSENRLFIRRGDLHI-------IPKTSLPDPTLVDSLNFLINNENESRASEAIQNAVKRKISDYPHRAKRNMHNXXXXXXXXXXXXLKHEPCLISLAVEGFYDRDIDTMKYAAXMERF 831 P+W++ DNS+ R++I G++ I + K + P + F I++ + S + +++ +++ +P A + K++ LIS AV FY RD Y M +F Sbjct: 129 PKWIDEDNSDYRVWIHNGEVIILRPEDEFLKKMNRCPPLTREQAIFQISSGSNLYTSREVNDSISQRLKKFPKAANVKLRAICTVPRKIVHVLQKNKN-LISSAVNAFYYRDPIDENYCDRMSKF 252
BLAST of FC910034 vs. ExPASy Swiss-Prot
Match: SGT1_DROME (Protein SGT1 homolog ecdysoneless OS=Drosophila melanogaster GN=ecd PE=1 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 3.755e-14 Identity = 54/159 (33.96%), Postives = 76/159 (47.80%), Query Frame = 2 Query: 161 DDTVFYSIYP---DSTLSTSSLQSIHLQILDHLSPLISD------YIWQHEPFNLSLSTTAI---------------------PHLHGHLRFGDNLEDEWFTVFLLFEISRAFHALSIRVWDSDGEFLLIEAAFHLPA-GSTQTTPKTVCLFAAVISIL 544 +D V Y I+P D+ +L+ + LQI + +S ++ + Y+W + F L + PH HG +GDN+ DEWF V+LL EI+RA RV DSDGEFLLIEAA LP S +T + V L + +L Sbjct: 15 EDFVEYYIFPKIPDNVQDEGALRKLMLQIRNEISAIVREKSLERSYLWHKDEFQLQVRLGGAEERLLNEETNPEEEAELGDLPPHFHGVTHYGDNISDEWFVVYLLTEITRARGDCIARVSDSDGEFLLIEAADALPDWASPETCEQRVYLVGGHLQLL 173 The following BLAST results are available for this feature:
BLAST of FC910034 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC910034 ID=FC910034; Name=FC910034; organism=Citrus clementina; type=EST; length=834bpback to top |