FC910036

Overview
NameFC910036
Unique NameFC910036
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length854
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC910036_ssr29 microsatellite FC910036_ssr29:29..40. BLAST: Citrus ESTs to Prunus persica proteins V1
FC910036_ssr680 microsatellite FC910036_ssr680:680..700. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13399 contig Ccv1_Contig13399:1..854. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC910036 vs. ExPASy Swiss-Prot
Match: AHSA2_MOUSE (Activator of 90 kDa heat shock protein ATPase homolog 2 OS=Mus musculus GN=Ahsa2 PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 1.051e-27
Identity = 68/163 (41.72%), Postives = 98/163 (60.12%), Query Frame = 3
Query:  120 MAKYGEGDKRWIVEDRPDGANVHNWHWAETDCLEWSRNLLNGLLSDLTILDGEGNLFVKTKKIEKVEGEAYVNVRKGKIIPGYELNVTVSWEGEAKDGDGGSLLKVDGLVEIPYISDENADENPEIRVSVKDEGPLGKRLKDAMWVKGKPVIEEKVKVYVEAM 608
            MAK+G+GD RWIVE+R DG NV+NWHW E D   WS+  L  LL  + + +  G    +  ++++VEGEA  N RKGK+I  YE N+ ++W+G  K+    S  K  GL+EIP +S+EN   + E+ VS K     G+ LKD M   G   + E +  Y++A+
Sbjct:    1 MAKWGQGDPRWIVEEREDGTNVNNWHWTERDATIWSKGKLRELLVGIAMENEAGR--CEISELKQVEGEASCNSRKGKLIFFYEWNIKLAWKGTVKE----SGAKHKGLIEIPSLSEENEINDTEVNVSKKKGD--GEILKDLMRTTGTAKVREALGEYLKAL 155          
BLAST of FC910036 vs. ExPASy Swiss-Prot
Match: AHSA2_BOVIN (Activator of 90 kDa heat shock protein ATPase homolog 2 OS=Bos taurus GN=AHSA2 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.342e-27
Identity = 67/163 (41.10%), Postives = 98/163 (60.12%), Query Frame = 3
Query:  120 MAKYGEGDKRWIVEDRPDGANVHNWHWAETDCLEWSRNLLNGLLSDLTILDGEGNLFVKTKKIEKVEGEAYVNVRKGKIIPGYELNVTVSWEGEAKDGDGGSLLKVDGLVEIPYISDENADENPEIRVSVKDEGPLGKRLKDAMWVKGKPVIEEKVKVYVEAM 608
            MAK+G+GD RWIVE+R DG NV+NWHW E D   WS+  L  LL  +T+ +  G    +  ++++VEGEA  + RKGK+I  YE N+ + W+G  ++    S  K  GL+EIP +S+EN  ++ E+ VS K     G  LKD M   G   + E +  Y++A+
Sbjct:    1 MAKWGQGDPRWIVEEREDGTNVNNWHWTERDATSWSKGRLRELLVGITVENEAGR--CEISELKQVEGEASCSSRKGKLIFFYEWNIKLGWKGIIRE----SGAKHKGLIEIPSLSEENEVDDTEVNVSKKKGD--GDILKDLMKTAGTAKVREALGDYLKAL 155          
BLAST of FC910036 vs. ExPASy Swiss-Prot
Match: AHSA1_HUMAN (Activator of 90 kDa heat shock protein ATPase homolog 1 OS=Homo sapiens GN=AHSA1 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.589e-26
Identity = 64/163 (39.26%), Postives = 96/163 (58.90%), Query Frame = 3
Query:  120 MAKYGEGDKRWIVEDRPDGANVHNWHWAETDCLEWSRNLLNGLLSDLTILDGEGNLFVKTKKIEKVEGEAYVNVRKGKIIPGYELNVTVSWEGEAKDGDGGSLLKVDGLVEIPYISDENADENPEIRVSVKDEGPLGKRLKDAMWVKGKPVIEEKVKVYVEAM 608
            MAK+GEGD RWIVE+R D  NV+NWHW E D   WS + L  L   + + + EG    +  ++ K++GEA +N RKGK+I  YE +V ++W G +K G     ++  G VEIP +SDEN+ +  EI VS+  + P    L   M  +G  ++ E + +Y+  +
Sbjct:    1 MAKWGEGDPRWIVEERADATNVNNWHWTERDASNWSTDKLKTLFLAVQVQNEEGK--CEVTEVSKLDGEASINNRKGKLIFFYEWSVKLNWTGTSKSG-----VQYKGHVEIPNLSDENSVDEVEISVSLAKDEP-DTNLVALMKEEGVKLLREAMGIYISTL 155          
BLAST of FC910036 vs. ExPASy Swiss-Prot
Match: AHSA1_MOUSE (Activator of 90 kDa heat shock protein ATPase homolog 1 OS=Mus musculus GN=Ahsa1 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 5.768e-26
Identity = 64/163 (39.26%), Postives = 93/163 (57.06%), Query Frame = 3
Query:  120 MAKYGEGDKRWIVEDRPDGANVHNWHWAETDCLEWSRNLLNGLLSDLTILDGEGNLFVKTKKIEKVEGEAYVNVRKGKIIPGYELNVTVSWEGEAKDGDGGSLLKVDGLVEIPYISDENADENPEIRVSVKDEGPLGKRLKDAMWVKGKPVIEEKVKVYVEAM 608
            MAK+GEGD RWIVE+R D  NV+NWHW E D   WS   L  L   + + + EG    +  ++ K++GEA +N RKGK+I  YE  + ++W G +K G     ++  G VEIP +SDEN+ +  EI VS+  + P    L   M   G  ++ E V +Y+  +
Sbjct:    1 MAKWGEGDPRWIVEERADATNVNNWHWTERDASNWSTEKLKTLFLAVRVENEEGK--CEVTEVNKLDGEASINNRKGKLIFFYEWTIKLNWTGTSKSG-----VQYKGHVEIPNLSDENSVDEVEISVSLAKDEP-DTNLVALMKEDGVKLLREAVGIYISTL 155          
BLAST of FC910036 vs. ExPASy Swiss-Prot
Match: AHSA_DICDI (Activator of 90 kDa heat shock protein ATPase homolog OS=Dictyostelium discoideum GN=ahsa PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.570e-23
Identity = 69/210 (32.86%), Postives = 99/210 (47.14%), Query Frame = 3
Query:  120 MAKYGEGDKRWIVEDRPDGANVHNWHWAETDCLEWSRNLLNGLLSDLTILDGEGNLFVKTKKIEKVEGEAYVNVRKGKIIPGYELNVTVSWE------------------GEAKD----GDGGSLLK--------VDGLVEIPYISDENADENPEIRVSVKDEGPLGKRLKDAMWVK------GKPVIEEKVKVYVEAMARGGPCKDELE 641
            MAK GEGD RWIVE+R DG NV+ WHW+E DCL WS+N + GL     I + +   F K      V GE   N RKGK I  YEL+V ++WE                  G A D     D G   +        + G   +PYISDEN DE P +R ++       +  +    V+      G P ++ + + +++ + +    K ++E
Sbjct:    1 MAKVGEGDPRWIVENREDGHNVNGWHWSEKDCLPWSKNTIGGLFDKKVIQETDEYTF-KISSTPVVSGECTANNRKGKTIFLYELDVKMNWEVVFKPKKVLPPPPTTKSKGAADDIDEEDDDGKPAEPIITQKKTISGEFTVPYISDENGDEAPTVRYTINTTADNDETKQSINMVQSLLKSHGVPFVQSQCQEFIKLLKKEFVSKKQVE 209          
BLAST of FC910036 vs. ExPASy Swiss-Prot
Match: AHSA2_HUMAN (Activator of 90 kDa heat shock protein ATPase homolog 2 OS=Homo sapiens GN=AHSA2 PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 1.018e-22
Identity = 61/163 (37.42%), Postives = 94/163 (57.67%), Query Frame = 3
Query:  120 MAKYGEGDKRWIVEDRPDGANVHNWHWAETDCLEWSRNLLNGLLSDLTILDGEGNLFVKTKKIEKVEGEAYVNVRKGKIIPGYELNVTVSWEGEAKDGDGGSLLKVDGLVEIPYISDENADENPEIRVSVKDEGPLGKRLKDAMWVKGKPVIEEKVKVYVEAM 608
            MAK+G+G+  WIVE+R DG NV+NW W E D    S+     LL  + + +  G    +  ++++VEGEA  + RKGK+I  YE N+ + W+G  K+    S +K  GL+EIP +S+EN  ++ E+ +S K     G  LKD M   G   + E +  Y++A+
Sbjct:    1 MAKWGQGNPHWIVEEREDGTNVNNWRWTERDATSLSKGKFQELLVGIVVENDAGR--GEINELKQVEGEASCSSRKGKLIFFYEWNIKLGWKGIVKE----SGVKHKGLIEIPNLSEENEVDDTEVSLSKKKGD--GVILKDLMKTAGTAKVREALGDYLKAL 155          
BLAST of FC910036 vs. ExPASy Swiss-Prot
Match: AHA1_YEAST (Hsp90 co-chaperone AHA1 OS=Saccharomyces cerevisiae GN=AHA1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.353e-11
Identity = 32/113 (28.32%), Postives = 59/113 (52.21%), Query Frame = 3
Query:  180 NVHNWHWAETDCLEWSRNLLNGLLSDLTILDGEGNLFVKTKKIEKVEGEAYVNVRKGKIIPGYELNVTVSWEGEAKDGDGGSLLKVDGLVEIPYISDENADENPEIRVSVKDE 518
            N +NWHW + +C+ W++      L  +     +   + K K +  +EG+  VN RKGK+I  ++L +TV  EG   D   GS L  +G + +P ++ ++   + +  +S+  E
Sbjct:    5 NPNNWHWVDKNCIGWAKEYFKQKLVGVEAGSVKDKKYAKIKSVSSIEGDCEVNQRKGKVISLFDLKITVLIEGHV-DSKDGSALPFEGSINVPEVAFDSEASSYQFDISIFKE 116          
The following BLAST results are available for this feature:
BLAST of FC910036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
AHSA2_MOUSE1.051e-2741.72Activator of 90 kDa heat shock protein ATPase homo... [more]
AHSA2_BOVIN2.342e-2741.10Activator of 90 kDa heat shock protein ATPase homo... [more]
AHSA1_HUMAN2.589e-2639.26Activator of 90 kDa heat shock protein ATPase homo... [more]
AHSA1_MOUSE5.768e-2639.26Activator of 90 kDa heat shock protein ATPase homo... [more]
AHSA_DICDI4.570e-2332.86Activator of 90 kDa heat shock protein ATPase homo... [more]
AHSA2_HUMAN1.018e-2237.42Activator of 90 kDa heat shock protein ATPase homo... [more]
AHA1_YEAST2.353e-1128.32Hsp90 co-chaperone AHA1 OS=Saccharomyces cerevisia... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA15AG11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA15AG11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC910036 ID=FC910036; Name=FC910036; organism=Citrus clementina; type=EST; length=854bp
CGCTCTCTCTCATTATTAAACTTCCCCATTCTTCTTCTTCACCTTCGTGC
TCACGCTCACACCCGCAATCGAAACAAAACCATAATTCTCTCTTAACGTC
AGCTCACCGAATTCACTCAATGGCCAAATACGGCGAAGGGGACAAGCGTT
GGATCGTCGAAGACAGACCCGACGGAGCCAACGTCCACAACTGGCACTGG
GCCGAGACCGACTGCCTGGAATGGTCCAGAAACCTCCTCAACGGGCTCTT
GTCGGACTTAACCATCCTGGACGGCGAGGGGAATCTCTTCGTCAAGACTA
AGAAGATCGAGAAAGTTGAAGGGGAGGCCTATGTCAACGTTCGCAAGGGC
AAGATTATTCCTGGCTACGAGTTAAACGTCACCGTCTCGTGGGAGGGCGA
GGCCAAAGACGGGGATGGTGGTAGCTTGTTGAAGGTTGATGGGTTGGTTG
AGATTCCCTATATTTCCGATGAGAATGCCGATGAGAACCCCGAGATTAGG
GTTTCGGTCAAGGATGAGGGCCCCCTTGGGAAGAGATTGAAGGATGCAAT
GTGGGTTAAGGGCAAGCCGGTCATTGAGGAGAAAGTTAAGGTTTATGTCG
AGGCTATGGCGAGAGGCGGGCCGTGCAAGGATGAGCTTGAAGCTAAGAAT
GTGAGCTCGAAATCGAAGAATGATAACATTAGTAGTAGTAGTAGTAGTAG
TACTAGTTATGTGAGTCAGACGGTGAAAAACGATGTGGTGGCGGAGAAGA
AGGAGGTTAAGAAGGAGGTGAAGAAGAAGGAAGGGTTTAAGAATATATCG
CTGAGTGAGAAGTTTAGTTGCAGGGCGAAGGATTTGTATGAGATATTGAT
GGAT
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