FC910047

Overview
NameFC910047
Unique NameFC910047
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length882
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5818 contig Ccv1_Contig5818:1..882. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYRC_YEAST (Arginyl-tRNA synthetase, cytoplasmic OS=Saccharomyces cerevisiae GN=YDR341C PE=1 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.255e-55
Identity = 117/225 (52.00%), Postives = 149/225 (66.22%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRK-SELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            HV+FGMV     Q MSTRKGTV+ L + L++    MH+VMKKNE+KY Q++ PE  AD++GISA+M+QD  GK  N Y F  ERM SFEGDTGPYLQYAH+RL S++R  S +   +  NADFSL+       L+R L Q+PDV  N +KT EP TV+TYLFK++  +SSCYD           +  +   + E   A + LY +AR VL NGM+LLGLTPVERM
Sbjct:  399 HVNFGMV-----QGMSTRKGTVVFLDNILEETKEKMHEVMKKNENKYAQIEHPEEVADLVGISAVMIQDMQGKRINNYEFKWERMLSFEGDTGPYLQYAHSRLRSVERNASGITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAIKTHEPTTVVTYLFKLTHQVSSCYD-----------VLWVAGQTEELATARLALYGAARQVLYNGMRLLGLTPVERM 607          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYRC_SCHPO (Probable arginyl-tRNA synthetase, cytoplasmic OS=Schizosaccharomyces pombe GN=SPBC25B2.09c PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 4.179e-51
Identity = 107/229 (46.72%), Postives = 146/229 (63.76%), Query Frame = 2
Query:    2 KCGHVSFGMVKDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVAL--MGLYESARIVLANGMKLLGLTPVERM 682
            KC H+++G+V     Q MSTRKG  + L D ++     MH VM+KNE+KY QV++PE  ADI+G +AI +QD +GK  N Y FD  RMTSFEGDTGPYLQYAH+RL S++R     D E+  A+  L+T  +  +LVR L Q+PDV  N  + QE  TV+TYLFK++ A+S  YD             +++    E+ + L  + L+ +A+ VL NGM LLGLTP+ERM
Sbjct:  408 KCVHINYGLV-----QGMSTRKGKAVFLDDIMEVAKEEMHKVMQKNEEKYAQVENPEEVADIVGKTAIRIQDSTGKRINNYAFDWSRMTSFEGDTGPYLQYAHSRLSSVRRNVNYTDEEIMGANLELLTEPDAYDLVRLLGQYPDVLKNAFRFQETSTVVTYLFKLTHAVSKLYD-------------ILWVRGRERDIQLARLALFGAAKQVLNNGMTLLGLTPLERM 618          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYRM_YEAST (Arginyl-tRNA synthetase, mitochondrial OS=Saccharomyces cerevisiae GN=MSR1 PE=2 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 7.634e-45
Identity = 99/225 (44.00%), Postives = 137/225 (60.89%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKR-KSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            H++FGMV     Q MSTRKG V+ L   LD+  +    +M+ N+ K  QV +P+  AD++G+SAI++QD   K  N Y F+  RM SFEGDTGPYLQY H+RL S++R  S+     L +ADFS +   + +ELVR LAQ+PDV     +TQEP T++TYLFK+   +SSCY     + K A           +  +  + +Y ++R VL N M LLGL PV+RM
Sbjct:  435 HINFGMV-----QGMSTRKGNVVFLDTILDEARDKALQIMENNKMKISQVDNPQRVADLIGVSAIIIQDTKSKRINNYEFNWNRMLSFEGDTGPYLQYTHSRLRSLERTSSDFTTDMLIHADFSNLNEPQLVELVRLLAQYPDVLRRAFETQEPATIVTYLFKVCHQVSSCYKKIWVSGKPA-----------DIAIPRLAVYSASRQVLHNAMSLLGLVPVDRM 643          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYRC_DICDI (Probable arginyl-tRNA synthetase, cytoplasmic OS=Dictyostelium discoideum GN=argS1 PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 3.207e-43
Identity = 93/226 (41.15%), Postives = 144/226 (63.72%), Query Frame = 2
Query:   11 HVSFGMVKDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKV--ALMGLYESARIVLANGMKLLGLTPVERM 682
            H+++GMVK      MSTRKGTV+ L D L+     M  +MK+NE K+ +++DPE  ADI+G+SA+++QDF+ K    Y+F+ +RM   +GDTGPYLQYAHARLCS++RKS  + +   NA+ SL++  E   L  T+ ++P++   T    EP T++ YLF+++ A+SS +              V++    EK V  A   LY +A+++L +G+++LGL P+ERM
Sbjct:  384 HINYGMVKG-----MSTRKGTVVFLEDILNKTQKKMLKIMKQNEQKFAEIEDPEKVADIVGLSAVVIQDFNAKRNKDYDFNWDRMLKSDGDTGPYLQYAHARLCSLERKSGFEFN--PNANLSLLSEPEAFNLAITIGRYPEIIQLTHNQLEPSTLVGYLFELAHAVSSAH-------------QVLWIKDREKDVAEARFVLYWAAKVILGSGLRILGLVPLERM 589          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYRM_XENLA (Probable arginyl-tRNA synthetase, mitochondrial OS=Xenopus laevis GN=rars2 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.209e-27
Identity = 79/229 (34.50%), Postives = 126/229 (55.02%), Query Frame = 2
Query:    2 KCGHVSFGMVKDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEG--IELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            +C HV FG+V     Q M TR+G V+ L D LD+  + M   M  +E   KQ+ DP  TA+ +GI+A++VQDF G++ + Y+FD ++     GDTG +LQY HARL S++      D+E    DF + + +E   I  ++ L ++ +V    L+  +P  ++TYL  +    +  +          +T+ V    S E   A +  +++ ++VL NGMKLLG+TPV  M
Sbjct:  373 RCQHVPFGLV-----QGMKTRRGEVVFLEDVLDEARSRMLQNMAASETS-KQLDDPSDTAEKIGIAALIVQDFKGQLVSDYHFDWDQALQSTGDTGVFLQYTHARLHSLQALRCPRDTE----DFEIASLREPCVIATLQHLLRYDEVIYKCLEDLQPRYLVTYLLSLGHLANVAH----------RTLQVK-GSSSEAAHARLLFFKNVQMVLGNGMKLLGITPVNNM 580          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYRM_MOUSE (Probable arginyl-tRNA synthetase, mitochondrial OS=Mus musculus GN=Rars2 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.376e-27
Identity = 77/230 (33.48%), Postives = 129/230 (56.09%), Query Frame = 2
Query:    2 KCGHVSFGMVKDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRK---SELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            +C HV FG+VK      M TR+G V  L D L++V + M   M   +   KQ+++P+ TA+ +G++A+++QDF G + + Y F  +R+    GDTG +LQY HARLCS++       L+DS +A      +   + + +++ L ++ +V   + +  +P  +++YL  +S   +  +          KT+ V     P+   A + L+++ R VLANGMKLLG+TPV RM
Sbjct:  371 RCQHVPFGIVKG-----MKTRRGGVTFLEDVLNEVQSRMLQNMASIKTT-KQLENPQETAERVGLAAVIIQDFRGTLLSDYQFSWDRVFQSRGDTGVFLQYTHARLCSLEETFGCGYLNDSNVA-----CLQEPQSVSILQHLLRFDEVLYLSSQDLQPKHIVSYLLTLSHLAAVAH----------KTLQVK-DSPPDVAGARLHLFKAVRSVLANGMKLLGITPVCRM 578          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_ENCCU (Arginyl-tRNA synthetase OS=Encephalitozoon cuniculi GN=ECU08_0550 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.775e-25
Identity = 77/229 (33.62%), Postives = 119/229 (51.97%), Query Frame = 2
Query:    2 KCGHVSFGMVKDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKNEDKYK-QVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRK-SELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            K  HVS+G+V       MSTR G V  L D + +    M +VM  + +K      + + TA++L IS ++V DF+ +   GY FD+E+       TG YLQYAH RL S++ K S +D +++   DF LI   + + LV  L  +  V    L+  EP  ++TYL  ++ ++          N     + V+  D    +  L+ L  SARIVL NG+++LG TP+ +M
Sbjct:  351 KFQHVSYGLVAG-----MSTRAGKVQLLEDIIQESTEVMKNVMMSDNNKGSFTAAEMDQTAEVLAISTLLVMDFTARRVKGYEFDIEKRARNTSGTGLYLQYAHCRLRSIETKNSNVDYNDIETIDFELIHVPKVLNLVYKLLWFEHVVEKCLEDYEPSRIVTYLQDLASSI----------NGAINILRVLGVDKELARARLLVL-SSARIVLHNGLRILGATPLNKM 563          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYRM_BOVIN (Probable arginyl-tRNA synthetase, mitochondrial OS=Bos taurus GN=RARS2 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.355e-24
Identity = 71/227 (31.28%), Postives = 121/227 (53.30%), Query Frame = 2
Query:    2 KCGHVSFGMVKDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            +C HV FG+V     Q M TR+G V  L D L+++   M   M   +   K++++PE TA+ +G++A+++QDF G + + Y F  +R+    GDTG +LQY HARL S+  +       L + + + +   + + +++ L ++ +V   + +  +P  +++YL  +S   +  +      N             PE   A + L+ + R VLANGMKLLG+TPV RM
Sbjct:  371 RCQHVPFGVV-----QGMKTRRGDVTFLEDVLNEIRLRMLQNMASIKTT-KELENPEETAEQVGLAALIIQDFRGFLLSDYQFSWDRVFQSRGDTGVFLQYTHARLHSL--EETFGCGYLNDFNTACLQEPQSVSILQHLLRFDEVLYRSSQDLQPRHIVSYLLTLSHLAAVAHRTLHVRN-----------SPPEVAGARLHLFRAVRSVLANGMKLLGITPVCRM 578          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_HALOH (Arginyl-tRNA synthetase OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=argS PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.688e-24
Identity = 70/226 (30.97%), Postives = 113/226 (50.00%), Query Frame = 2
Query:    5 CGHVSFGMVKDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSELANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            C HV FGMV    G TMSTRKG V+ L D L+     +    +  EDK   +++ E  A I+GI A++ Q+        Y F  +R  SFEG+TGPY+QY + R  S+  KS     +L   D+SL+T ++   +++ ++Q+PD      +  EP  +  ++ +++KA +  Y               +  D  + + A + L  +   VL  G+ LLG+   E+M
Sbjct:  358 CIHVPFGMVSLEDG-TMSTRKGRVVFLEDVLNKA---IEKTKETIEDKNPDLENKEEVAKIVGIGAVIFQELYNSRIKDYVFSWDRTLSFEGETGPYVQYTYVRTKSVLNKSNYKFKKL--DDYSLLTDEDAFNVIKLISQFPDTIIKASERYEPSIITRHITELAKAFNKYYHDNQ-----------ILVDDQKVREARLFLVYAVNTVLKTGLSLLGIKTPEKM 566          
BLAST of FC910047 vs. ExPASy Swiss-Prot
Match: SYR_CLOBM (Arginyl-tRNA synthetase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=argS PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.429e-24
Identity = 73/227 (32.16%), Postives = 119/227 (52.42%), Query Frame = 2
Query:    5 CGHVSFGMVKDPKGQTMSTRKGTVISLADSLDDVHNFMHDVMKKNEDKYKQVQDPEATADILGISAIMVQDFSGKMANGYNFDMERMTSFEGDTGPYLQYAHARLCSMKRKSELDDSEL-ANADFSLITAKEGIELVRTLAQWPDVFTNTLKTQEPVTVLTYLFKMSKALSSCYDAKDTNNKNAKTMSVMYADSPEKKVALMGLYESARIVLANGMKLLGLTPVERM 682
            C HV FG+VK    + +STR G V+ L D L+     + + +K   +K   ++D E TA  LGI A++             FD + + SF+G+TGPY++Y++AR  S+ RK+     EL   AD+S +++KE  EL + L  + D   N +   EP  V  Y+ +++KA +  Y+A            ++ A+  + K+A + L E+   V+ N + LLG+  VE M
Sbjct:  355 CKHVGFGLVK-LANKKLSTRNGDVVFLEDLLNQS---VEETLKIINEKNPNLKDKEGTAKKLGIGAVVFTYLKNNRERDIVFDWKEILSFDGETGPYVEYSYARGKSILRKA----GELTGEADYSKLSSKEEFELAKLLGGFNDAIMNAIDKLEPAMVTRYVIEVAKAFNKFYNAH----------GILNAEDNDVKLARVKLVEATCQVIKNALNLLGIDVVEEM 563          
The following BLAST results are available for this feature:
BLAST of FC910047 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373
Match NameE-valueIdentityDescription
SYRC_YEAST1.255e-5552.00Arginyl-tRNA synthetase, cytoplasmic OS=Saccharomy... [more]
SYRC_SCHPO4.179e-5146.72Probable arginyl-tRNA synthetase, cytoplasmic OS=S... [more]
SYRM_YEAST7.634e-4544.00Arginyl-tRNA synthetase, mitochondrial OS=Saccharo... [more]
SYRC_DICDI3.207e-4341.15Probable arginyl-tRNA synthetase, cytoplasmic OS=D... [more]
SYRM_XENLA4.209e-2734.50Probable arginyl-tRNA synthetase, mitochondrial OS... [more]
SYRM_MOUSE9.376e-2733.48Probable arginyl-tRNA synthetase, mitochondrial OS... [more]
SYR_ENCCU8.775e-2533.62Arginyl-tRNA synthetase OS=Encephalitozoon cunicul... [more]
SYRM_BOVIN4.355e-2431.28Probable arginyl-tRNA synthetase, mitochondrial OS... [more]
SYR_HALOH5.688e-2430.97Arginyl-tRNA synthetase OS=Halothermothrix orenii ... [more]
SYR_CLOBM7.429e-2432.16Arginyl-tRNA synthetase OS=Clostridium botulinum (... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA56BF02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA56BF02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC910047 ID=FC910047; Name=FC910047; organism=Citrus clementina; type=EST; length=882bp
CAAGTGCGGTCACGTTTCTTTCGGCATGGTCAAGGACCCCAAGGGCCAGA
CCATGAGCACTCGCAAGGGCACTGTCATCTCGCTCGCCGACAGCCTGGAC
GATGTGCACAACTTCATGCACGATGTCATGAAGAAGAACGAAGACAAGTA
CAAGCAGGTCCAGGACCCCGAGGCAACTGCCGACATTCTCGGCATTTCCG
CCATCATGGTGCAGGACTTCAGCGGCAAGATGGCCAACGGCTACAACTTC
GACATGGAGCGCATGACCTCCTTCGAGGGCGACACTGGTCCCTACCTGCA
GTACGCACACGCCCGCCTGTGCTCCATGAAGCGCAAGTCCGAGCTCGATG
ACTCTGAACTCGCCAACGCCGACTTCAGCCTCATCACGGCCAAGGAGGGC
ATCGAGCTCGTCCGCACCCTCGCACAGTGGCCCGACGTCTTCACCAACAC
ACTCAAGACCCAGGAGCCCGTCACCGTCCTCACCTACCTGTTCAAGATGT
CCAAGGCTCTCAGCTCGTGCTACGACGCTAAGGACACCAACAATAAGAAC
GCGAAGACCATGAGTGTCATGTACGCAGACAGCCCCGAGAAGAAGGTTGC
TCTCATGGGCCTGTACGAGAGCGCTAGGATTGTGTTGGCCAACGGCATGA
AGCTGCTCGGTCTCACTCCTGTGGAGAGGATGTAAAAGGGCAGACCGGCA
GTGAGGGATTCAGAAACAAAAGTACGGGACTGGGGAAGACCGAAAGACGA
CTTCCCGGTCATGGCTAAATGTCAGGGACAGCGACGATAAGCTCTCTCTG
GTCCAGCATAGCACATTTGCCGAGGGACGGCCGGGCAGCAACACGCATGT
AATCTACGGTATGTGGGAAAGCTGTCTGCGTG
back to top