FC910051

Overview
NameFC910051
Unique NameFC910051
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length870
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2727 contig Ccv1_Contig2727:515..1385. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC910051 vs. ExPASy Swiss-Prot
Match: NEP2_NEPGR (Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.261e-24
Identity = 82/266 (30.83%), Postives = 119/266 (44.74%), Query Frame = -2
Query:   36 CNDEPLATSKNCTQICPSYLVLYGSG-LTEGIALSETLNLPNRIIPNFLVGCSV----LSSRQPAGIAGFGRGKTSLPSQLNLDKFSYCLLSHKFDDTTRTSSLILDNGSSHSDKKTTGLTYTPFVNNPSVAERNAFSVYYYVGLRRITVGGQRVRVWHKYLTLDRDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAEALTGLRPCFDVPGE-KTGSFPELKLHFKGGAEVTLPVENYFAVVGEGSAVCLTV 815
            C D P   S+ C      Y   YG G  T+G   +ET       +PN   GC            AG+ G G G  SLPSQL + +FSYC+ S+    ++  S+L L + +S   + +   T      NP+         YYY+ L+ ITVGG  + +      L  DG GG I+DSGTT T++  + +  +A  F  Q+            E+ +GL  CF  P +  T   PE+ + F GG  + L  +N      EG  +CL +
Sbjct:  156 CQDLP---SETCNNNECQYTYGYGDGSTTQGYMATETFTFETSSVPNIAFGCGEDNQGFGQGNGAGLIGMGWGPLSLPSQLGVGQFSYCMTSY---GSSSPSTLALGSAASGVPEGSPSTTLIHSSLNPT---------YYYITLQGITVGGDNLGIPSSTFQLQDDGTGGMIIDSGTTLTYLPQDAYNAVAQAFTDQI------NLPTVDESSSGLSTCFQQPSDGSTVQVPEISMQFDGGV-LNLGEQNILISPAEG-VICLAM 398          
BLAST of FC910051 vs. ExPASy Swiss-Prot
Match: NEP1_NEPGR (Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.147e-23
Identity = 81/260 (31.15%), Postives = 123/260 (47.31%), Query Frame = -2
Query:   36 TSKNCTQICPSYLVLYGSGL-TEGIALSETLNLPNRIIPNFLVGCSV----LSSRQPAGIAGFGRGKTSLPSQLNLDKFSYCLLSHKFDDTTRTSSLILDNGSSHSDKKTTGLTYTPFVNNPSVAERNAFSVYYYVGLRRITVGGQRVRVWHKYLTLD-RDGNGGTIVDSGTTFTFMAPELFEPLADEFVSQMVKNRNYTRALGAEALTGLRPCFDVPGEKTG-SFPELKLHFKGGAEVTLPVENYFAVVGEGSAVCLTV 794
            +S  C+     Y   YG G  T+G   +ETL   +  IPN   GC            AG+ G GRG  SLPSQL++ KFSYC+       ++  S+L+L    S ++  T G   T  + +  +        +YY+ L  ++VG  R+ +      L+  +G GG I+DSGTT T+     ++ +  EF+SQ+    N     G+   +G   CF  P + +    P   +HF GG ++ LP ENYF     G  +CL +
Sbjct:  159 SSPTCSNNFCQYTYGYGDGSETQGSMGTETLTFGSVSIPNITFGCGENNQGFGQGNGAGLVGMGRGPLSLPSQLDVTKFSYCMTP---IGSSTPSNLLL---GSLANSVTAGSPNTTLIQSSQI------PTFYYITLNGLSVGSTRLPIDPSAFALNSNNGTGGIIIDSGTTLTYFVNNAYQSVRQEFISQI----NLPVVNGSS--SGFDLCFQTPSDPSNLQIPTFVMHFDGG-DLELPSENYFISPSNG-LICLAM 398          
The following BLAST results are available for this feature:
BLAST of FC910051 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NEP2_NEPGR7.261e-2430.83Aspartic proteinase nepenthesin-2 OS=Nepenthes gra... [more]
NEP1_NEPGR6.147e-2331.15Aspartic proteinase nepenthesin-1 OS=Nepenthes gra... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA56BF03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA56BF03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC910051 ID=FC910051; Name=FC910051; organism=Citrus clementina; type=EST; length=870bp
ATCGCCGGCCCACCAGACGCCTCCCTGTCGGTCACCACCGTCAAACAAAC
TGCCGAACCTTCACCAACCACCGCAAAATAATTCTCCACCGGCAGTGTCA
CCTCAGCACCTCCCTTGAAATGCAACTTCAACTCCGGAAACGACCCCGTT
TTCTCTCCTGGAACATCAAAACAGGGCCTCAACCCCGTTAAAGCCTCAGC
TCCAAGTGCCCTAGTATAGTTCCGGTTCTTCACCATTTGGGATACAAACT
CATCAGCCAATGGCTCGAACAACTCCGGTGCCATGAATGTGAACGTAGTA
CCAGAATCAACAATGGTACCTCCATTTCCATCACGATCCAGCGTCAAGTA
CTTGTGCCAAACTCTAACACGCTGGCCACCGACAGTGATCCGTCTGAGAC
CAACGTAGTAGTAAACTGAGAAGGCATTTCTTTCAGCAACGCTTGGGTTA
TTTACAAAAGGCGTGTAAGTTAGACCGGTTGTTTTCTTATCAGAATGCGA
GCTGCCGTTATCAAGAATCAGAGAGCTGGTTCTTGTCGTGTCGTCGAACT
TGTGAGACAGGAGGCAGTAAGAGAACTTGTCGAGGTTGAGCTGACTCGGA
AGTGAGGTTTTGCCGCGGCCGAACCCGGCAATGCCGGCCGGCTGGCGGGA
GGATAAAACAGAGCATCCGACGAGGAAGTTAGGTATTATTCTGTTGGGAA
GATTTAGGGTTTCTGACAGAGCAATTCCTTCTGTTAAGCCGGAGCCGTAG
AGGACCAAATAAGAAGGGCAGATTTGGGTACAGTTTTTTGAGGTGGCCAA
GGGTTCATCATTACAGTCTCTGCATTGAATGCTTTCGTGGTGAATCAAGA
GCATTTANGGTTTTGGCAGC
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