FC910052

Overview
NameFC910052
Unique NameFC910052
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length887
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8086 contig Ccv1_Contig8086:84..963. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC910052 vs. ExPASy Swiss-Prot
Match: B3GTC_ARATH (Probable beta-1,3-galactosyltransferase 12 OS=Arabidopsis thaliana GN=B3GALT12 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.657e-73
Identity = 66/93 (70.97%), Postives = 71/93 (76.34%), Query Frame = 1
Query:  607 DRLATLLAKERSNPLTCIGCMKKGHVITDPKMKWYEKSGHLIGNEYFLHAYGPIXXXXXXXXXXXXXXRNNSLRMFSNEDVTIGSWMLAMNVH 885
            DRLATLLA ER +  T IGCMKKG VITDPK+KWYEK G+LIGNEYFLHAYGPI              RN SLRMF+NEDVTIGSWMLAM+VH
Sbjct:  222 DRLATLLANERLHSQTYIGCMKKGPVITDPKLKWYEKQGNLIGNEYFLHAYGPIYVLSAEIVASLAAARNGSLRMFNNEDVTIGSWMLAMDVH 314          

HSP 2 Score: 126.716 bits (317), Expect = 4.657e-73
Identity = 61/76 (80.26%), Postives = 68/76 (89.47%), Query Frame = 3
Query:  309 DNGALLDRPKLLGFVGIQTGFASADRRAALRRTWFPSDPDGLLRLEQATGIAFRFVIGKSKDAKKMAQLEKEIDKY 536
            +NG +++R KLLGFVGIQTGF S DRR ALR TWFPSDPD LLRLEQATG+AFRFVIGKSKDAKKMA+LEKEI +Y
Sbjct:  100 NNGVVVERRKLLGFVGIQTGFDSGDRRTALRSTWFPSDPDSLLRLEQATGLAFRFVIGKSKDAKKMAELEKEIKEY 175          

HSP 3 Score: 40.4318 bits (93), Expect = 4.657e-73
Identity = 29/87 (33.33%), Postives = 37/87 (42.53%), Query Frame = 1
Query:   37 MPLFSHRHNSSALPTSTTTNSSYSAKDQKLHKLNSKXXXXXXXXXXXXXXXXXAVITF-----AVNAVRRPSPLPVYRCGRSEDTFR 282
            MPLFSHR  ++A  +S  + S Y+    K HK NS                   V  F      + A+    P  VYRCG S+DT R
Sbjct:    1 MPLFSHRF-TTASSSSPASPSYYNKPSSKTHKPNSSSSSYTSSRIHVAIIFFSLVSVFIGVAGTIFALSSTGPASVYRCGGSKDTSR 86          

HSP 4 Score: 36.965 bits (84), Expect = 4.657e-73
Identity = 15/30 (50.00%), Postives = 21/30 (70.00%), Query Frame = 2
Query:  536 RDFKLIDVQEEYLKFPYKT*ELLQIALQLF 625
            RDF L+D +EEY++ PYKT    + A +LF
Sbjct:  176 RDFVLLDTEEEYIRLPYKTLAFFKAAFKLF 205          
BLAST of FC910052 vs. ExPASy Swiss-Prot
Match: B3GTE_ARATH (Probable beta-1,3-galactosyltransferase 14 OS=Arabidopsis thaliana GN=B3GALT14 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.056e-55
Identity = 58/93 (62.37%), Postives = 68/93 (73.12%), Query Frame = 1
Query:  607 DRLATLLAKERSNPLTCIGCMKKGHVITDPKMKWYEKSGHLIGNEYFLHAYGPIXXXXXXXXXXXXXXRNNSLRMFSNEDVTIGSWMLAMNVH 885
            DRL+ LLAKERS+  T +GC+KKG V TDPK+KWYE   HL+G EYFLHAYGPI              +NNS RMF+NEDVTIG+WMLAMNV+
Sbjct:  198 DRLSLLLAKERSHSQTYLGCLKKGPVFTDPKLKWYEPLSHLLGKEYFLHAYGPIYALSADVVASLVALKNNSFRMFNNEDVTIGAWMLAMNVN 290          

HSP 2 Score: 99.3673 bits (246), Expect = 8.056e-55
Identity = 45/70 (64.29%), Postives = 59/70 (84.29%), Query Frame = 3
Query:  330 RPKLLGFVGIQTGFASADRRAALRRTWFPSDPDGLLRLEQATGIAFRFVIGKSKDAKKMAQLEKEIDKYE 539
            R K++GFVGIQTGF SA RR +LR+TW PSDP+GL RLE++TG+A RF+IGK+K  +KMAQL +EI +Y+
Sbjct:   83 RHKVMGFVGIQTGFGSAGRRRSLRKTWMPSDPEGLRRLEESTGLAIRFMIGKTKSEEKMAQLRREIAEYD 152          

HSP 3 Score: 33.4982 bits (75), Expect = 8.056e-55
Identity = 14/29 (48.28%), Postives = 19/29 (65.52%), Query Frame = 2
Query:  539 DFKLIDVQEEYLKFPYKT*ELLQIALQLF 625
            DF L+D++EEY K PYKT    + A  L+
Sbjct:  153 DFVLLDIEEEYSKLPYKTLAFFKAAYALY 181          
BLAST of FC910052 vs. ExPASy Swiss-Prot
Match: B3GTD_ARATH (Probable beta-1,3-galactosyltransferase 13 OS=Arabidopsis thaliana GN=B3GALT13 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.220e-53
Identity = 58/93 (62.37%), Postives = 66/93 (70.97%), Query Frame = 1
Query:  607 DRLATLLAKERSNPLTCIGCMKKGHVITDPKMKWYEKSGHLIGNEYFLHAYGPIXXXXXXXXXXXXXXRNNSLRMFSNEDVTIGSWMLAMNVH 885
            DRL+ LLAKER +  T +GCMKKG V TDPK+KWYE    L+G EYFLHAYGPI              +NNS RMFSNEDVTIG+WMLAMNV+
Sbjct:  196 DRLSLLLAKERGHSQTYLGCMKKGPVFTDPKLKWYEPLADLLGKEYFLHAYGPIYALSADVVTSLVALKNNSFRMFSNEDVTIGAWMLAMNVN 288          

HSP 2 Score: 97.0561 bits (240), Expect = 3.220e-53
Identity = 44/70 (62.86%), Postives = 55/70 (78.57%), Query Frame = 3
Query:  330 RPKLLGFVGIQTGFASADRRAALRRTWFPSDPDGLLRLEQATGIAFRFVIGKSKDAKKMAQLEKEIDKYE 539
            R K++GFVGIQTGF SA RR ALR TW PSDP+GL RLE++TG+A RF+IGK+KD  KM +L  E+  Y+
Sbjct:   81 RHKVMGFVGIQTGFRSAGRRRALRNTWMPSDPEGLRRLEESTGLAIRFIIGKTKDEAKMVELRSEVAMYD 150          

HSP 3 Score: 33.113 bits (74), Expect = 3.220e-53
Identity = 14/29 (48.28%), Postives = 19/29 (65.52%), Query Frame = 2
Query:  539 DFKLIDVQEEYLKFPYKT*ELLQIALQLF 625
            DF L+D++EEY K PYKT    + A  L+
Sbjct:  151 DFILLDIEEEYSKLPYKTLAFFKAAYALY 179          
BLAST of FC910052 vs. ExPASy Swiss-Prot
Match: B3GT5_ARATH (Probable beta-1,3-galactosyltransferase 5 OS=Arabidopsis thaliana GN=B3GALT5 PE=2 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 1.452e-17
Identity = 40/104 (38.46%), Postives = 51/104 (49.04%), Query Frame = 1
Query:  589 NVRASSDRLATLLAKERSNPLTCIGCMKKGHVITDPKMKWYE----KSGHLIGNEYFLHAYGPIXXXXXXXXXXXXXXRNNS--LRMFSNEDVTIGSWMLAMNV 882
            +V  +   LA+ LA  RS P   IGCMK G V+T    K+ E    K G   GN+YF HA G I               NN   L  ++NEDVT+GSW + + V
Sbjct:  233 DVHVNLGTLASTLASHRSKPRVYIGCMKSGPVLTKKTAKYREPEFWKFGEE-GNKYFRHATGQIYAISKDLATYIS---NNQPILHKYANEDVTLGSWFIGLEV 332          

HSP 2 Score: 52.7582 bits (125), Expect = 1.452e-17
Identity = 36/96 (37.50%), Postives = 50/96 (52.08%), Query Frame = 3
Query:  336 KLLGFVGIQTGFASADRRAALRRTWFPSDPDGLLRLEQATGIAFRFVIGKSKDAKKMAQLEKEIDKYEILNS*MFR----KNI*SFLIKRKSFFRS 611
            K+   +GI T F+S  RR +LR TW P   + L +LE+  GI  +F+IG S     M  L+KEID  +   +  FR    +   +   K KSFF S
Sbjct:  125 KVFMVIGINTAFSSRKRRDSLRETWMPQG-EKLEKLEKEKGIVVKFMIGHSSTPNSM--LDKEIDSEDAQYNDFFRLDHVEGYYNLSAKTKSFFSS 217          
BLAST of FC910052 vs. ExPASy Swiss-Prot
Match: B3GT6_ARATH (Probable beta-1,3-galactosyltransferase 6 OS=Arabidopsis thaliana GN=B3GALT6 PE=2 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 1.185e-16
Identity = 36/102 (35.29%), Postives = 52/102 (50.98%), Query Frame = 1
Query:  589 NVRASSDRLATLLAKERSNPLTCIGCMKKGHVITDPKMKWYE----KSGHLIGNEYFLHAYGPIXXXXXXXXXXXXXXRNNSLRMFSNEDVTIGSWMLAMNV 882
            +V  +   L + LA+ RS P   IGCMK G V+    +K++E    K G   GN+YF HA G I              R   L  ++NEDV++GSW + ++V
Sbjct:  237 DVHVNLGMLGSTLARHRSKPRVYIGCMKSGPVLAQKGVKYHEPEYWKFGEE-GNKYFRHATGQIYAISKDLATYISVNRQ-LLHKYANEDVSLGSWFIGLDV 336          

HSP 2 Score: 49.6766 bits (117), Expect = 1.185e-16
Identity = 32/80 (40.00%), Postives = 42/80 (52.50%), Query Frame = 3
Query:  330 RPKLLGFVGIQTGFASADRRAALRRTWFPSDPDGLLRLEQATGIAFRFVIGKSKDAKKMAQLEKEIDKYEILNS*MFRKN 569
            RP++   +GI T F+S  RR ++R TW P   D L RLE   GI  RFVIG S     +  L+  I+  E  +   FR N
Sbjct:  127 RPRMFFVMGIMTAFSSRKRRDSIRGTWLPKG-DELKRLETEKGIIMRFVIGHSSSPGGV--LDHTIEAEEEQHKDFFRLN 203          
BLAST of FC910052 vs. ExPASy Swiss-Prot
Match: B3GTB_ARATH (Probable beta-1,3-galactosyltransferase 11 OS=Arabidopsis thaliana GN=B3GALT11 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 2.613e-16
Identity = 36/112 (32.14%), Postives = 56/112 (50.00%), Query Frame = 1
Query:  553 RCSGRIFKVSL*NVRASSDRLATLLAKERSNPLTCIGCMKKGHVITDPKMKWYEKSGHLIGNE--YFLHAYGPIXXXXXXXXXXXXXXRNNSLRMFSNEDVTIGSWMLAMNV 882
            R   + +  ++ N+  + D L T LA    NP   IGCMK G V ++P  KWYE      G++  YF HAYG +              R + L  ++++DV+ GSW + ++V
Sbjct:  206 RWDAQFYAKAIDNIYVNIDALGTTLAAHLENPRAYIGCMKSGEVFSEPNHKWYEPEWWKFGDKKAYFRHAYGEMYVITHALARFVSINR-DILHSYAHDDVSTGSWFVGLDV 316          

HSP 2 Score: 39.6614 bits (91), Expect = 2.613e-16
Identity = 27/79 (34.18%), Postives = 41/79 (51.90%), Query Frame = 3
Query:  294 SIRLRDNGALLDRPKLLGFVGIQTGFASADRRAALRRTWFPSDPDGLLRLEQATGIAFRFVIGKSKDAKKMAQLEKEID 530
            S +L D      RP ++  +GI T   +  +R A+R+ W  +    L +LE   G+  RFVIG+S  A K   ++K ID
Sbjct:   97 SPKLADGTETKKRPLVV--IGIMTSLGNKKKRDAVRQAWMGTGAS-LKKLESEKGVIARFVIGRS--ANKGDSMDKSID 170          
The following BLAST results are available for this feature:
BLAST of FC910052 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
B3GTC_ARATH4.657e-7370.97Probable beta-1,3-galactosyltransferase 12 OS=Arab... [more]
B3GTE_ARATH8.056e-5562.37Probable beta-1,3-galactosyltransferase 14 OS=Arab... [more]
B3GTD_ARATH3.220e-5362.37Probable beta-1,3-galactosyltransferase 13 OS=Arab... [more]
B3GT5_ARATH1.452e-1738.46Probable beta-1,3-galactosyltransferase 5 OS=Arabi... [more]
B3GT6_ARATH1.185e-1635.29Probable beta-1,3-galactosyltransferase 6 OS=Arabi... [more]
B3GTB_ARATH2.613e-1632.14Probable beta-1,3-galactosyltransferase 11 OS=Arab... [more]
back to top
Properties
Property NameValue
Genbank descriptionIC0AAA10AF04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA10AF04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC910052 ID=FC910052; Name=FC910052; organism=Citrus clementina; type=EST; length=887bp
CAACATTTTCCCTGCCTCAACTCACAATTCGCCGAAATGCCACTCTTCTC
CCACCGCCACAACTCCTCAGCTCTTCCCACCTCCACCACCACAAACTCAT
CCTACTCAGCCAAAGATCAAAAGCTCCATAAACTTAATTCTAAAATATCA
CTGCCCATTCTCCTCTTTTCACTCCTCTCCATCTTCTTCGACCTCGCTGT
CATAACCTTTGCCGTCAACGCCGTCCGCCGCCCCAGTCCCCTACCCGTCT
ACCGTTGCGGTAGATCCGAAGACACTTTCCGTGCATTCTACTCTCTATCC
GACTCCGCGATAATGGAGCTCTCCTTGATCGCCCCAAGCTTCTCGGGTTT
GTTGGAATTCAAACCGGCTTCGCTTCAGCTGATCGCCGGGCCGCTCTTCG
AAGAACGTGGTTCCCTTCTGACCCGGATGGACTCTTAAGATTAGAGCAAG
CTACCGGGATAGCATTTCGGTTTGTAATTGGGAAATCTAAAGATGCAAAG
AAGATGGCACAGCTTGAGAAAGAGATTGATAAGTACGAGATTTTAAACTC
ATAGATGTTCAGGAAGAATATTTAAAGTTTCCTTATAAAACGTAAGAGCT
TCTTCAGATCGCCTTGCAACTCTTCTTGCCAAGGAACGTAGCAATCCGCT
GACTTGCATTGGTTGTATGAAGAAAGGACATGTGATCACTGACCCTAAAA
TGAAGTGGTATGAAAAATCAGGGCACCTTATTGGAAATGAATACTTCTTG
CATGCTTATGGTCCTATATATGTTCTGTCTGCATATGTGGTGGCTTCATT
AGCTGCTGCAAGAAATAACAGTTTGAGAATGTTCAGTAATGAGGATGTAA
CTATCGGGTCATGGATGCTTGCTATGAACGTCCACCA
back to top