FC910642

Overview
NameFC910642
Unique NameFC910642
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length864
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC910642_ssr169 microsatellite FC910642_ssr169:169..186. BLAST: Citrus ESTs to Prunus persica proteins V1
FC910642_ssr187 microsatellite FC910642_ssr187:187..198. BLAST: Citrus ESTs to Prunus persica proteins V1
FC910642_ssr729 microsatellite FC910642_ssr729:729..738. BLAST: Citrus ESTs to Prunus persica proteins V1
FC910642_ssr186 microsatellite FC910642_ssr186:186..197. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC910642 vs. ExPASy Swiss-Prot
Match: YFHM_BACSU (AB hydrolase superfamily protein yfhM OS=Bacillus subtilis GN=yfhM PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.081e-11
Identity = 32/78 (41.03%), Postives = 46/78 (58.97%), Query Frame = 1
Query:  205 NQINIHADA----DAHVVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSDPPAEPEKTSFQDMVDDLLAIL 426
            N I +H  A    D  ++V LHGFPE WY W++Q+  +  AG+R IAPD RGY LSD P   +      + DD++ ++
Sbjct:   12 NGITLHVAAAGREDGPLIVLLHGFPEFWYGWKNQIKPLVDAGYRVIAPDQRGYNLSDKPEGIDSYRIDTLRDDIIGLI 89          
BLAST of FC910642 vs. ExPASy Swiss-Prot
Match: HYES_PIG (Epoxide hydrolase 2 OS=Sus scrofa GN=EPHX2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.412e-11
Identity = 31/68 (45.59%), Postives = 45/68 (66.18%), Query Frame = 1
Query:  244 VVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSDPPAEPEKTSFQDMVDDLLAILDHLGLAK 447
            V   HGFPE W+SWR+Q+  +A AGFR +A D +GYG S  P E E+ S + +  D++  L+ LGL++
Sbjct:  261 VCLCHGFPESWFSWRYQIPALAQAGFRVLAVDMKGYGESSAPPEIEEYSLEVLCKDMVTFLNKLGLSQ 328          
BLAST of FC910642 vs. ExPASy Swiss-Prot
Match: HYES_HUMAN (Epoxide hydrolase 2 OS=Homo sapiens GN=EPHX2 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.146e-11
Identity = 30/68 (44.12%), Postives = 44/68 (64.71%), Query Frame = 1
Query:  244 VVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSDPPAEPEKTSFQDMVDDLLAILDHLGLAK 447
            V   HGFPE WYSWR+Q+  +A AG+R +A D +GYG S  P E E+   + +  +++  LD LGL++
Sbjct:  261 VCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMVTFLDKLGLSQ 328          
BLAST of FC910642 vs. ExPASy Swiss-Prot
Match: EPHX4_MOUSE (Epoxide hydrolase 4 OS=Mus musculus GN=Ephx4 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.366e-11
Identity = 32/72 (44.44%), Postives = 44/72 (61.11%), Query Frame = 1
Query:  241 VVVFLHGFPEIWYSWRHQMVGVATAGFRAIAPDCRGYGLSDPPAEPEKTSFQDMVDDLLAILDHLGLAKVTI 456
            +++ LHGFPE WYSWRHQ+    +  +R +A D RGYG SD PA  E      ++ D+  ILD LG +K  +
Sbjct:   93 LMLLLHGFPEFWYSWRHQLREFKSE-YRVVALDLRGYGESDAPAHQESYKLDCLIADIKDILDSLGYSKCVL 163          
The following BLAST results are available for this feature:
BLAST of FC910642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
YFHM_BACSU1.081e-1141.03AB hydrolase superfamily protein yfhM OS=Bacillus ... [more]
HYES_PIG1.412e-1145.59Epoxide hydrolase 2 OS=Sus scrofa GN=EPHX2 PE=2 SV... [more]
HYES_HUMAN3.146e-1144.12Epoxide hydrolase 2 OS=Homo sapiens GN=EPHX2 PE=1 ... [more]
EPHX4_MOUSE5.366e-1144.44Epoxide hydrolase 4 OS=Mus musculus GN=Ephx4 PE=2 ... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA10AG04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA10AG04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC910642 ID=FC910642; Name=FC910642; organism=Citrus clementina; type=EST; length=864bp
ATCGGGTAGCTAAAAACACAGAAACATTAACTGCTTGCGGAAAAATGGAT
CAAATTGAGCACAAGTTCATCAAAGTACAAGGCCTGAACCTTCACATCGC
CGAGGCCGGAGCAGGTTTTTCAGTCATCACTTTATCATGCACCCAGGCTG
CCGCTACCTGACAATATCTATATATATATATATATACACACACACACAAT
TCTTAATCAAATTAACATCCATGCAGATGCAGATGCACATGTGGTGGTGT
TCTTGCATGGATTCCCTGAGATATGGTACTCGTGGCGGCATCAGATGGTG
GGTGTGGCCACTGCTGGCTTCAGGGCCATTGCTCCTGATTGCAGAGGGTA
CGGCCTCTCCGACCCACCTGCTGAACCTGAAAAAACCTCTTTTCAGGACA
TGGTAGATGATCTCCTCGCCATTTTGGATCATCTCGGACTAGCTAAGGTT
ACTATATATCTTTCCCAGCTAGCCTCTATGTTCAATATTAGGATATGTTT
CATTACTAATTTCAATAGTTTATACGTTTGATTGAAAAGTGAAAACAGTA
GTTTAGTTGGTTCAACTGGCAATTGCTCTTGGAGCGTTACAAAAGAAAGG
TCTGAGGTTCTAATCTCCTTCACATTGGGGTAGGATTTTTCATATTTTGT
AGTTTTTTCATTTCCAGGTGCCCTTTAGTAAAAACTATATAGCTACTATA
GAAGAGGGAGAGGGAGAGGGAGAGGGAGATATATATATACATATGCCTAC
CTTTGTGGTAGAACCATATATTGATGCTTCAGGCCTAATGATTTTGGCTC
TCTACATATATTGTATAGGTTTTTCTTGTTGCAAAAGATTTTGGAGCTCT
GACTGCATACATGT
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