FC910645

Overview
NameFC910645
Unique NameFC910645
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length924
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC910645_ssr134 microsatellite FC910645_ssr134:134..154. BLAST: Citrus ESTs to Prunus persica proteins V1
FC910645_ssr170 microsatellite FC910645_ssr170:170..190. BLAST: Citrus ESTs to Prunus persica proteins V1
FC910645_ssr360 microsatellite FC910645_ssr360:360..374. BLAST: Citrus ESTs to Prunus persica proteins V1
FC910645_ssr611 microsatellite FC910645_ssr611:611..631. BLAST: Citrus ESTs to Prunus persica proteins V1
FC910645_ssr650 microsatellite FC910645_ssr650:650..661. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13443 contig Ccv1_Contig13443:1..924. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC910645 vs. ExPASy Swiss-Prot
Match: AIL5_ARATH (AP2-like ethylene-responsive transcription factor AIL5 OS=Arabidopsis thaliana GN=AIL5 PE=2 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 5.461e-49
Identity = 118/224 (52.68%), Postives = 137/224 (61.16%), Query Frame = 2
Query:  272 PESSHICLFEXXXXXXXXXXXSGSTINLARGGGGEATGIASATDLSIFTGSPKLEDFLGGSCTATPPQP-PQVQ-LGHHHLSS-------ATTAHEIYDSELKTIAASFLR----GFATEQTDIXXXXXXXXXXXXXXXXXXXXVPLVAQPAPKKTVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWG 904
            P  SH+ LF+           S S +    G  G +   A+A  LS++ G PKLE+FLGG  + T  +P  QVQ LG    SS         +A EIYDSELK+IAASFL     G ++E + +                        A P PKK V++FGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKE+KAARAYDLAALKYWG
Sbjct:   60 PHPSHLSLFQAF---------STSPVERQDGSPGVSPSDATAV-LSVYPGGPKLENFLGGGASTTTTRPMQQVQSLGGVVFSSDLQPPLHPPSAAEIYDSELKSIAASFLGNYSGGHSSEVSSVHKQQPNPLAVSE------------ASPTPKKNVESFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAARAYDLAALKYWG 261          
BLAST of FC910645 vs. ExPASy Swiss-Prot
Match: PLET2_ARATH (AP2-like ethylene-responsive transcription factor PLT2 OS=Arabidopsis thaliana GN=PLT2 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 6.263e-37
Identity = 68/77 (88.31%), Postives = 74/77 (96.10%), Query Frame = 2
Query:  674 VAQPAPKKTVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWG 904
            + +  P++T++TFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWG
Sbjct:  172 IVEATPRRTLETFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWG 248          
BLAST of FC910645 vs. ExPASy Swiss-Prot
Match: BBM_ARATH (AP2-like ethylene-responsive transcription factor BBM OS=Arabidopsis thaliana GN=BBM PE=2 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 6.263e-37
Identity = 68/78 (87.18%), Postives = 75/78 (96.15%), Query Frame = 2
Query:  674 VAQPAPKKTVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGS 907
            V +  PKKT+++FGQRTSIYRGVTRHRWTGRYEAHLWDNSC+REGQ+RKGRQVYLGGYDKEEKAARAYDLAALKYWG+
Sbjct:  192 VVETTPKKTIESFGQRTSIYRGVTRHRWTGRYEAHLWDNSCKREGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGT 269          
BLAST of FC910645 vs. ExPASy Swiss-Prot
Match: BBM2_BRANA (AP2-like ethylene-responsive transcription factor BBM2 OS=Brassica napus GN=BBM2 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.822e-36
Identity = 67/76 (88.16%), Postives = 74/76 (97.37%), Query Frame = 2
Query:  680 QPAPKKTVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGS 907
            +  PKKT+++FGQRTSIYRGVTRHRWTGRYEAHLWDNSC+REGQ+RKGRQVYLGGYDKEEKAARAYDLAALKYWG+
Sbjct:  194 EATPKKTIESFGQRTSIYRGVTRHRWTGRYEAHLWDNSCKREGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGT 269          
BLAST of FC910645 vs. ExPASy Swiss-Prot
Match: BBM1_BRANA (AP2-like ethylene-responsive transcription factor BBM1 OS=Brassica napus GN=BBM1 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.822e-36
Identity = 67/76 (88.16%), Postives = 74/76 (97.37%), Query Frame = 2
Query:  680 QPAPKKTVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGS 907
            +  PKKT+++FGQRTSIYRGVTRHRWTGRYEAHLWDNSC+REGQ+RKGRQVYLGGYDKEEKAARAYDLAALKYWG+
Sbjct:  194 EATPKKTIESFGQRTSIYRGVTRHRWTGRYEAHLWDNSCKREGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGT 269          
BLAST of FC910645 vs. ExPASy Swiss-Prot
Match: PLET1_ARATH (AP2-like ethylene-responsive transcription factor PLT1 OS=Arabidopsis thaliana GN=PLT1 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.924e-36
Identity = 67/78 (85.90%), Postives = 73/78 (93.59%), Query Frame = 2
Query:  671 LVAQPAPKKTVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWG 904
            +V    P++ +DTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKE+KAAR+YDLAALKYWG
Sbjct:  162 VVETATPRRALDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAARSYDLAALKYWG 239          
BLAST of FC910645 vs. ExPASy Swiss-Prot
Match: AIL7_ARATH (AP2-like ethylene-responsive transcription factor AIL7 OS=Arabidopsis thaliana GN=AIL7 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 9.998e-35
Identity = 66/72 (91.67%), Postives = 70/72 (97.22%), Query Frame = 2
Query:  692 KKTVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGS 907
            KK V+T GQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQ+RKGRQVYLGGYDKE++AARAYDLAALKYWGS
Sbjct:  161 KKIVETLGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEDRAARAYDLAALKYWGS 232          
BLAST of FC910645 vs. ExPASy Swiss-Prot
Match: AIL1_ARATH (AP2-like ethylene-responsive transcription factor AIL1 OS=Arabidopsis thaliana GN=AIL1 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 9.998e-35
Identity = 64/79 (81.01%), Postives = 74/79 (93.67%), Query Frame = 2
Query:  668 PLVAQPAPKKTVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWG 904
            P V +  P+K+VD++GQRTS YRGVTRHRWTGRYEAHLWDNSC++EGQ+R+GRQVYLGGYD+EEKAARAYDLAALKYWG
Sbjct:  203 PQVKESVPRKSVDSYGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRRGRQVYLGGYDEEEKAARAYDLAALKYWG 281          
BLAST of FC910645 vs. ExPASy Swiss-Prot
Match: ANT_ARATH (AP2-like ethylene-responsive transcription factor ANT OS=Arabidopsis thaliana GN=ANT PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 3.556e-32
Identity = 62/71 (87.32%), Postives = 67/71 (94.37%), Query Frame = 2
Query:  692 KKTVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWG 904
            +K++DTFGQRTS YRGVTRHRWTGRYEAHLWDNS ++EG SRKGRQVYLGGYD EEKAARAYDLAALKYWG
Sbjct:  271 RKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSFKKEGHSRKGRQVYLGGYDMEEKAARAYDLAALKYWG 341          
BLAST of FC910645 vs. ExPASy Swiss-Prot
Match: AIL6_ARATH (AP2-like ethylene-responsive transcription factor AIL6 OS=Arabidopsis thaliana GN=AIL6 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.305e-31
Identity = 63/72 (87.50%), Postives = 66/72 (91.67%), Query Frame = 2
Query:  692 KKTVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGS 907
            KK  DTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQ+RKGRQ   GGYDKE+KAARAYDLAALKYW +
Sbjct:  256 KKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQ---GGYDKEDKAARAYDLAALKYWNA 324          
The following BLAST results are available for this feature:
BLAST of FC910645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
AIL5_ARATH5.461e-4952.68AP2-like ethylene-responsive transcription factor ... [more]
PLET2_ARATH6.263e-3788.31AP2-like ethylene-responsive transcription factor ... [more]
BBM_ARATH6.263e-3787.18AP2-like ethylene-responsive transcription factor ... [more]
BBM2_BRANA1.822e-3688.16AP2-like ethylene-responsive transcription factor ... [more]
BBM1_BRANA1.822e-3688.16AP2-like ethylene-responsive transcription factor ... [more]
PLET1_ARATH6.924e-3685.90AP2-like ethylene-responsive transcription factor ... [more]
AIL7_ARATH9.998e-3591.67AP2-like ethylene-responsive transcription factor ... [more]
AIL1_ARATH9.998e-3581.01AP2-like ethylene-responsive transcription factor ... [more]
ANT_ARATH3.556e-3287.32AP2-like ethylene-responsive transcription factor ... [more]
AIL6_ARATH2.305e-3187.50AP2-like ethylene-responsive transcription factor ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA22CC06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA22CC06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC910645 ID=FC910645; Name=FC910645; organism=Citrus clementina; type=EST; length=924bp
CTTTCAAAGACAGCACAAAATTTTCTCTCTTTCTTTCCTTCCACTATTTC
CAAAGAAACAAACACCCCTCCTCTTTTTCTCTCTCGTCTCGCTTTCTTAT
TTCACACTCACCGATACAGCACAAAGCAAAATGAATAATAATAATAATAA
TAATATGAACGTCAACCTAAGCAGCAGCAGCAGCAGCAGCAACAGTATCA
ATATGGATCATTCCGCTTGGCTTGGCTTCTCTCTTTCCAATAACAACTTG
CAAACTTCCTCCACTTCTGATCCTGAATCCTCTCACATCTGCCTCTTTGA
AGCCTTCACCACCGCCGCCACTGCCACCACCGCCTCAGGTAGTACTATTA
ATTTAGCAAGAGGAGGAGGAGGAGAAGCAACTGGGATAGCAAGTGCAACA
GACTTATCTATATTCACGGGCAGCCCTAAACTTGAAGATTTTCTTGGGGG
TTCATGCACCGCTACGCCACCGCAGCCGCCACAAGTGCAACTAGGTCATC
ATCATCTTTCCAGTGCAACGACTGCTCATGAGATTTATGACTCCGAGCTC
AAAACAATAGCCGCTAGCTTCCTTCGCGGCTTTGCCACCGAACAAACAGA
CATCCACCATCAGCAGCAGCAGCAGCAGCAGCACCTAAAACACCACCACC
AACAACAACAACTAGTGCCGCTTGTTGCACAGCCCGCGCCTAAGAAAACA
GTTGATACTTTCGGCCAACGCACCTCTATTTACCGAGGGGTCACTAGACA
TAGATGGACGGGGAGGTATGAAGCTCACTTGTGGGATAACAGCTGCAGAA
GAGAAGGCCAAAGTAGAAAAGGAAGACAAGTTTATTTGGGTGGCTATGAT
AAAGAAGAGAAAGCAGCTAGAGCTTACGATCTTGCAGCTCTCAAATACTG
GGGGTCCGACCACTACTACAAAAT
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