FC910648

Overview
NameFC910648
Unique NameFC910648
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length974
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3126 contig Ccv1_Contig3126:1..974. BLAST: Citrus Unigene V1 Contigs to SwissProt
Homology
BLAST of FC910648 vs. ExPASy Swiss-Prot
Match: IBB_HORVU (Bowman-Birk type trypsin inhibitor OS=Hordeum vulgare GN=BBBI PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.290e-27
Identity = 64/164 (39.02%), Postives = 73/164 (44.51%), Query Frame = 3
Query:  180 AEKTRPWKCCDRPLCSRSIPPRCRCMDAVEQCDEACTRCEASQSDPSKRICNDRYHGWPGPSCTNPDADDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEKPRPWKCCDDTLCTRSAPPTCACNDXXXXXXXXXXXXXXDESDASRFVCRDRYFGWPGPKCT 671
            A K RPWKCCD  +C+RSIPP C CMD V +C + C  C     DPS+RIC D+Y G PGP C                                         RPW+CCD  +CTRS PPTC C D                S  SR VC D YFG   P+CT
Sbjct:    1 AGKKRPWKCCDEAVCTRSIPPICTCMDEVFECPKTCKSC-GPMGDPSRRICQDQYVGDPGPIC-----------------------------------------RPWECCDKAICTRSNPPTCRCVDEVKKCAPTCKTCLPSRSRPSRRVCIDSYFGPVPPRCT 122          
BLAST of FC910648 vs. ExPASy Swiss-Prot
Match: IBBR_ORYSJ (Bowman-Birk type bran trypsin inhibitor OS=Oryza sativa subsp. japonica GN=RBBI3.3 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 5.431e-18
Identity = 62/178 (34.83%), Postives = 74/178 (41.57%), Query Frame = 3
Query:  159 TAATEIGAEKTRPWKCCD--RPLCSRSIPPRCRCMDAVE--QCDEACTRC-EASQSDPSKRICNDRYHGW-PGPSCTNPDADDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEKPRPW-KCCDDTLCTRSAPPTCACND-XXXXXXXXXXXXXXDESDASRFVCRDRYFGWPGPKC 668
            TAA + G    RPWKCCD  + L ++  PP+ RC D +E  QC  AC  C EA    P K IC D Y G  PGP CT                                       PRPW  CCD   C +  PPTC C D               + S+  R+VC+DR+ G PGP C
Sbjct:  111 TAALD-GLSMERPWKCCDNIKRLPTKPDPPQWRCNDELEPSQCTAACKSCREAPGPFPGKLICEDIYWGADPGPFCT---------------------------------------PRPWGDCCDKAFCNKMNPPTCRCMDEVKECADACKDCQRVESSEPPRYVCKDRFTGHPGPVC 248          

HSP 2 Score: 72.0182 bits (175), Expect = 5.816e-12
Identity = 66/211 (31.28%), Postives = 80/211 (37.91%), Query Frame = 3
Query:   84 LSATVADDHVD---TIRLPSNGLADEVATAATEIGAEKTRPWKCCDRPLCSRSI--PPRCRCMDAVEQCDEACTRC-EASQSD--PSKRICNDRYHGW-PGPSCTNPDADDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEKPRPWKCCDD--TLCTRSAPPTCACNDXXXXXXXXXXXXXXDESDA---SRFVCRDRYFGW-PGPKCT 671
            L A +A  H D   TIRLPS+G       AA        +PW CCD    SR +  PP  RC D V+QC  AC  C EA   D      +C+D +    PGP CT                                        RPWKCCD+   L T+  PP   CND               E+      + +C D Y+G  PGP CT
Sbjct:   15 LLAGLAAAHGDGDTTIRLPSDGAKASRPRAA--------KPWDCCDNIEISRLMIYPPLYRCNDEVKQCAAACKECVEAPGGDFNGGAFVCSDWFSTVDPGPKCT-------------------------------AALDGLSMERPWKCCDNIKRLPTKPDPPQWRCNDELEPSQCTAACKSCREAPGPFPGKLICEDIYWGADPGPFCT 186          
BLAST of FC910648 vs. ExPASy Swiss-Prot
Match: IBBR_ORYSI (Bowman-Birk type bran trypsin inhibitor OS=Oryza sativa subsp. indica GN=RBBI3.3 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 5.431e-18
Identity = 62/178 (34.83%), Postives = 74/178 (41.57%), Query Frame = 3
Query:  159 TAATEIGAEKTRPWKCCD--RPLCSRSIPPRCRCMDAVE--QCDEACTRC-EASQSDPSKRICNDRYHGW-PGPSCTNPDADDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEKPRPW-KCCDDTLCTRSAPPTCACND-XXXXXXXXXXXXXXDESDASRFVCRDRYFGWPGPKC 668
            TAA + G    RPWKCCD  + L ++  PP+ RC D +E  QC  AC  C EA    P K IC D Y G  PGP CT                                       PRPW  CCD   C +  PPTC C D               + S+  R+VC+DR+ G PGP C
Sbjct:  111 TAALD-GLSMERPWKCCDNIKRLPTKPDPPQWRCNDELEPSQCTAACKSCREAPGPFPGKLICEDIYWGADPGPLCT---------------------------------------PRPWGDCCDKAFCNKMNPPTCRCMDEVKECADACKDCQRVESSEPPRYVCKDRFTGHPGPVC 248          

HSP 2 Score: 72.4034 bits (176), Expect = 4.453e-12
Identity = 66/211 (31.28%), Postives = 80/211 (37.91%), Query Frame = 3
Query:   84 LSATVADDHVD---TIRLPSNGLADEVATAATEIGAEKTRPWKCCDRPLCSRSI--PPRCRCMDAVEQCDEACTRC-EASQSD--PSKRICNDRYHGW-PGPSCTNPDADDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEKPRPWKCCDD--TLCTRSAPPTCACNDXXXXXXXXXXXXXXDESDA---SRFVCRDRYFGW-PGPKCT 671
            L A +A  H D   TIRLPS+G       AA        +PW CCD    SR +  PP  RC D V+QC  AC  C EA   D      +C+D +    PGP CT                                        RPWKCCD+   L T+  PP   CND               E+      + +C D Y+G  PGP CT
Sbjct:   15 LLAGLAAAHGDGDTTIRLPSDGAKASRPRAA--------KPWDCCDNIEISRLMIYPPLYRCNDEVKQCAAACKECVEAPGGDFNGGAFVCSDWFSTVDPGPKCT-------------------------------AALDGLSMERPWKCCDNIKRLPTKPDPPQWRCNDELEPSQCTAACKSCREAPGPFPGKLICEDIYWGADPGPLCT 186          
BLAST of FC910648 vs. ExPASy Swiss-Prot
Match: IBB2_WHEAT (Bowman-Birk type proteinase inhibitor II-4 (Fragment) OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.932e-15
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 3
Query:  189 TRPWKCCDRPLCSRSIPPRCRCMDAVEQCDEACTRCEASQSDPSKRICNDRY 344
            TRPWKCCDR +C++S PP CRCMD VEQC   C +C  + SD S+R+C D Y
Sbjct:    2 TRPWKCCDRAICTKSFPPMCRCMDMVEQCAATCKKCGPATSDSSRRVCEDXY 53          
BLAST of FC910648 vs. ExPASy Swiss-Prot
Match: IBB1_WHEAT (Bowman-Birk type proteinase inhibitor I-2B (Fragment) OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.295e-15
Identity = 32/55 (58.18%), Postives = 39/55 (70.91%), Query Frame = 3
Query:  180 AEKTRPWKCCDRPLCSRSIPPRCRCMDAVEQCDEACTRCEASQSDPSKRICNDRY 344
            A K RPWKCCD+ +C+RSIPP CRCMD V +C   C  C  S  DPS+R+C D+Y
Sbjct:    1 AAKKRPWKCCDQAVCTRSIPPICRCMDQVFECPSTCKACGPSVGDPSRRVCQDQY 55          
BLAST of FC910648 vs. ExPASy Swiss-Prot
Match: IBB1_COILA (Bowman-Birk type trypsin inhibitor TI1 OS=Coix lachryma-jobi PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.635e-14
Identity = 30/62 (48.39%), Postives = 46/62 (74.19%), Query Frame = 3
Query:  183 EKTRPWKCCDRPLCSRSIPPRCRCMDAVEQCDEACTRCEASQSDPSKRICNDRYHGWPGPSC 368
            ++ RPW+CCD  +C+RSIPP CRC+D V++C +AC  CE  +++ ++ +C D Y G PGP+C
Sbjct:    2 DEKRPWECCDIAMCTRSIPPICRCVDKVDRCSDACKDCE--ETEDNRHVCFDTYIGDPGPTC 61          
BLAST of FC910648 vs. ExPASy Swiss-Prot
Match: IBB3_SETIT (Bowman-Birk type trypsin inhibitor 3 OS=Setaria italica PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.758e-14
Identity = 32/60 (53.33%), Postives = 38/60 (63.33%), Query Frame = 3
Query:  192 RPWKCCDRPLCSRSIPPRCRCMDAVEQCDEACTRC-EASQSDPSKRICNDRYHGWPGPSC 368
            RPWKCCD   C++SIP  CRC D +EQC +AC  C +   SDP + IC D Y G P P C
Sbjct:    4 RPWKCCDLQTCTKSIPAFCRCRDLLEQCSDACKECGKVRDSDPPRYICQDVYRGIPAPMC 63          
BLAST of FC910648 vs. ExPASy Swiss-Prot
Match: IBB2_SETIT (Bowman-Birk type major trypsin inhibitor OS=Setaria italica PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.758e-14
Identity = 32/60 (53.33%), Postives = 38/60 (63.33%), Query Frame = 3
Query:  192 RPWKCCDRPLCSRSIPPRCRCMDAVEQCDEACTRC-EASQSDPSKRICNDRYHGWPGPSC 368
            RPWKCCD   C++SIP  CRC D +EQC +AC  C +   SDP + IC D Y G P P C
Sbjct:    4 RPWKCCDLQTCTKSIPAFCRCRDLLEQCSDACKECGKVRDSDPPRYICQDVYRGIPAPMC 63          
The following BLAST results are available for this feature:
BLAST of FC910648 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
IBB_HORVU1.290e-2739.02Bowman-Birk type trypsin inhibitor OS=Hordeum vulg... [more]
IBBR_ORYSJ5.431e-1834.83Bowman-Birk type bran trypsin inhibitor OS=Oryza s... [more]
IBBR_ORYSI5.431e-1834.83Bowman-Birk type bran trypsin inhibitor OS=Oryza s... [more]
IBB2_WHEAT1.932e-1559.62Bowman-Birk type proteinase inhibitor II-4 (Fragme... [more]
IBB1_WHEAT3.295e-1558.18Bowman-Birk type proteinase inhibitor I-2B (Fragme... [more]
IBB1_COILA1.635e-1448.39Bowman-Birk type trypsin inhibitor TI1 OS=Coix lac... [more]
IBB3_SETIT4.758e-1453.33Bowman-Birk type trypsin inhibitor 3 OS=Setaria it... [more]
IBB2_SETIT4.758e-1453.33Bowman-Birk type major trypsin inhibitor OS=Setari... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA22CC07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA22CC07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC910648 ID=FC910648; Name=FC910648; organism=Citrus clementina; type=EST; length=974bp
ATCGATCTGCCTGTGCAGCCATGAAGAGATGCATTGCTGCCGTTATGCTG
GTGCTTTCACTCGAGGCCCTCGCCGCCGGGCGCCTCTCGGCTACCGTCGC
CGACGACCATGTGGACACCATTCGTCTCCCGAGCAACGGTCTTGCCGATG
AAGTAGCGACGGCGGCTACGGAGATCGGCGCCGAGAAGACGAGGCCGTGG
AAGTGCTGCGACCGCCCGTTGTGCAGCAGGTCCATCCCGCCGCGGTGCCG
CTGCATGGACGCGGTGGAGCAGTGCGACGAGGCCTGCACCCGCTGCGAAG
CGTCCCAGTCCGACCCTTCCAAGCGCATCTGCAACGACCGGTACCACGGC
TGGCCCGGGCCCAGCTGCACCAACCCCGACGCCGACGACATCCCAAGTGG
TCCGGGAGTTTCTGGTCCGCCGGTCGCGGTGGCAGCGGAGGAAGAAGAAG
TTGTTAGCGAGGAGAGCGCCGTCGTCGGCAAGGAGAAGCCGAGGCCATGG
AAGTGCTGCGACGACACCCTGTGCACCAGGTCTGCCCCGCCGACCTGCGC
CTGCAACGACAAGGTGAAGAAGTGCGCCAAGACCTGTAAGAAGTGCGAGA
AGGACGAGTCGGACGCTTCCCGCTTCGTGTGCCGCGACCGCTACTTCGGC
TGGCCCGGGCCCAAGTGCACCGAGATCTAGCCTCACCGCGGTTTCTAGCT
AGGATGTGCATGCACGCCGAGCTCTACATGCGGCATGCAGCCTTGCACTG
GGTGATGGTGAATCGAATAAAGTGAGTTCGCCGGCCGGTCAGCGGCCTGG
TGTGTGTACCGAGTCACGGAGTCTTTGTATGCACTGGACTGGACTAGCTG
CGTACGTATGTGTTGCTCTCGTCGTCGTTGTTGTTTTACCACTAGTACTT
AGTTGCATGGTGTTACTATCATGAATAGGATAAGATGCGTCGAATAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
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