FC910656

Overview
NameFC910656
Unique NameFC910656
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length911
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5824 contig Ccv1_Contig5824:1..911. BLAST: Citrus Unigene V1 Contigs to SwissProt
Homology
BLAST of FC910656 vs. ExPASy Swiss-Prot
Match: FUCP_HAEIN (L-fucose permease OS=Haemophilus influenzae GN=fucP PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.584e-27
Identity = 77/229 (33.62%), Postives = 115/229 (50.22%), Query Frame = 3
Query:  204 KKLIFPIALITSLFFLWGFSYGLLDVLNKHFQNVLGITKLESTGLQVMYFGGGYLIFSPIAAEVLKRFGYKICILMGLSLYSIGAVMFWPTAHFSSKENASASFGGFCACTLVIACGLATLETAANSYAVVIGDPKTASPRLQFCQAWNGVASFIGPLIASKAFFSGKNAD------------------------NLTNVQFVYLGVACLGVAVAILFVFAKLPEVAEE 818
            KK I P  LITSLF LWGF+  + + +   FQ V+ I   E+  +Q+ ++GG   +  P AA    R+ YK  IL+GL+LY+IGA +FWP A +         F  F     ++  GLA LET AN Y + +GDP+TA+ RL F Q++N + S  G  +AS+   +   +D                        +L  ++  Y+ +  + VAV I+    K+P V  E
Sbjct:    8 KKFIVPFVLITSLFALWGFANDITNPMVAVFQTVMEIPASEAALVQLAFYGGYGTMAIP-AALFASRYSYKAGILLGLALYAIGAFLFWPAAQYEI-------FNFFLVSLYILTFGLAFLETTANPYILAMGDPQTATRRLNFAQSFNPLGSITGMFVASQLVLTNLESDKRDAAGNLIFHTLSEAEKMSIRTHDLAEIRDPYIALGFVVVAVFIIIGLKKMPAVKIE 228          
BLAST of FC910656 vs. ExPASy Swiss-Prot
Match: GLUP_BRUAB (Glucose/galactose transporter OS=Brucella abortus GN=gluP PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.339e-23
Identity = 69/206 (33.50%), Postives = 110/206 (53.40%), Query Frame = 3
Query:  216 FPIALITSLFFLWGFSYGLLDVLNKHFQNVLGITKLESTGLQVMYFGGGYLIFSPIAAEVLKRFGYKICILMGLSLYSIGAVMFWPTAHFSSKENASASFGGFCACTLVIACGLATLETAANSYAVVIGDPKTASPRLQFCQAWNGVASFIGP-----LIASKAFFSGKNADNLTNVQFVYLGVACLGVAVAILFVFAKLPEVAEE 818
            F +  +T LFF+WGF   L D+L  H +NV  +   +S  +Q  +FG  +++  P A +++KR  YK  I++GL + +IG  +F P A +         +  F     V+A G+  L+ AAN Y  ++G P+TA+ RL   QA+N + + + P     LI S A  +  NA+    V+F YL +A     +AI+F   K P+V E+
Sbjct:   23 FALTSLTLLFFMWGFITCLNDILIPHLKNVFQLNYTQSMLIQFCFFGAYFIVSLP-AGQLVKRISYKRGIVVGLIVAAIGCALFIPAASYRV-------YALFLGALFVLASGVTILQVAANPYVTILGKPETAASRLTLTQAFNSLGTTVAPVFGAVLILSAATDATVNAE-ADAVRFPYLLLALAFTVLAIIFAILKPPDVQED 219          
BLAST of FC910656 vs. ExPASy Swiss-Prot
Match: GLUP_BRUA2 (Glucose/galactose transporter OS=Brucella abortus (strain 2308) GN=gluP PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.339e-23
Identity = 69/206 (33.50%), Postives = 110/206 (53.40%), Query Frame = 3
Query:  216 FPIALITSLFFLWGFSYGLLDVLNKHFQNVLGITKLESTGLQVMYFGGGYLIFSPIAAEVLKRFGYKICILMGLSLYSIGAVMFWPTAHFSSKENASASFGGFCACTLVIACGLATLETAANSYAVVIGDPKTASPRLQFCQAWNGVASFIGP-----LIASKAFFSGKNADNLTNVQFVYLGVACLGVAVAILFVFAKLPEVAEE 818
            F +  +T LFF+WGF   L D+L  H +NV  +   +S  +Q  +FG  +++  P A +++KR  YK  I++GL + +IG  +F P A +         +  F     V+A G+  L+ AAN Y  ++G P+TA+ RL   QA+N + + + P     LI S A  +  NA+    V+F YL +A     +AI+F   K P+V E+
Sbjct:   23 FALTSLTLLFFMWGFITCLNDILIPHLKNVFQLNYTQSMLIQFCFFGAYFIVSLP-AGQLVKRISYKRGIVVGLIVAAIGCALFIPAASYRV-------YALFLGALFVLASGVTILQVAANPYVTILGKPETAASRLTLTQAFNSLGTTVAPVFGAVLILSAATDATVNAE-ADAVRFPYLLLALAFTVLAIIFAILKPPDVQED 219          
BLAST of FC910656 vs. ExPASy Swiss-Prot
Match: GLUP_HELPJ (Putative glucose/galactose transporter OS=Helicobacter pylori J99 GN=gluP PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.748e-23
Identity = 68/225 (30.22%), Postives = 114/225 (50.67%), Query Frame = 3
Query:  231 ITSLFFLWGFSYGLLDVLNKHFQNVLGITKLESTGLQVMYFGGGYLIFSPIAAEVLKRFGYKICILMGLSLYSIGAVMFWPTAHFSSKENASASFGGFCACTLVIACGLATLETAANSYAVVIGDPKTASPRLQFCQAWNGVASFIGPLIASKAFFSG-KNADNLT---------NVQFVYLGVACLGVAVAILFVFAKLPEVAEEAKR---NNSLVEPEHDIEG 866
            +T+LFFL GF   L D+L  H + +  +T  E++ +Q  +FG  Y I   +   V+ + GY   +++G  + + G  +F+P AHF        S+G F     ++A G+  L+TA N +  ++   K A   L   QA+N + + +GP+  S   FS  K +DNL+         +VQ  YLG+A   + +A++    KLP+V +E  +     SL   +H + G
Sbjct:   13 LTALFFLMGFITVLNDILIPHLKPIFDLTYFEASLIQFCFFGA-YFIMGGVFGNVISKIGYPFGVVLGFVITASGCALFYPAAHF-------GSYGFFLGALFILASGIVCLQTAGNPFVTLLSKGKEAR-NLVLVQAFNSLGTTLGPIFGSLLIFSATKTSDNLSLIDKLADAKSVQMPYLGLAVFSLLLALVMYLLKLPDVEKEMPKETTQKSLFSHKHFVFG 228          
BLAST of FC910656 vs. ExPASy Swiss-Prot
Match: GLUP_HELPY (Putative glucose/galactose transporter OS=Helicobacter pylori GN=gluP PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.133e-22
Identity = 67/225 (29.78%), Postives = 112/225 (49.78%), Query Frame = 3
Query:  231 ITSLFFLWGFSYGLLDVLNKHFQNVLGITKLESTGLQVMYFGGGYLIFSPIAAEVLKRFGYKICILMGLSLYSIGAVMFWPTAHFSSKENASASFGGFCACTLVIACGLATLETAANSYAVVIGDPKTASPRLQFCQAWNGVASFIGPLIASKAFFS----GKNAD------NLTNVQFVYLGVACLGVAVAILFVFAKLPEVAEEAKR---NNSLVEPEHDIEG 866
            +T+LFFL GF   L D+L  H + +  +T  E++ +Q  +FG  Y I   +   V+ + GY   +++G  + + G  +F+P AHF        S+G F     ++A G+  L+TA N +  ++   K A   L   QA+N + + +GP+  S   FS    G NA       +  +VQ  YLG+A   + +A++    KLP+V +E  +     SL   +H + G
Sbjct:   13 LTALFFLMGFITVLNDILIPHLKPIFDLTYFEASLIQFCFFGA-YFIMGGVFGNVISKIGYPFGVVLGFVITATGCALFYPAAHF-------GSYGFFLGALFILASGIVCLQTAGNPFVTLLSKGKEAR-NLVLVQAFNSLGTTLGPIFGSLLIFSTTKMGDNASLIDKLADAKSVQMPYLGLAVFSLLLALIMYLLKLPDVEKEMPKETTQKSLFSHKHFVFG 228          
BLAST of FC910656 vs. ExPASy Swiss-Prot
Match: GLUP_BRUME (Glucose/galactose transporter OS=Brucella melitensis GN=gluP PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.297e-22
Identity = 68/206 (33.01%), Postives = 109/206 (52.91%), Query Frame = 3
Query:  216 FPIALITSLFFLWGFSYGLLDVLNKHFQNVLGITKLESTGLQVMYFGGGYLIFSPIAAEVLKRFGYKICILMGLSLYSIGAVMFWPTAHFSSKENASASFGGFCACTLVIACGLATLETAANSYAVVIGDPKTASPRLQFCQAWNGVASFIGP-----LIASKAFFSGKNADNLTNVQFVYLGVACLGVAVAILFVFAKLPEVAEE 818
            F +  +T LFF+ GF   L D+L  H +NV  +   +S  +Q  +FG  +++  P A +++KR  YK  I++GL + +IG  +F P A +         +  F     V+A G+  L+ AAN Y  ++G P+TA+ RL   QA+N + + + P     LI S A  +  NA+    V+F YL +A     +AI+F   K P+V E+
Sbjct:   23 FALTSLTLLFFMSGFITCLNDILIPHLKNVFQLNYTQSMLIQFCFFGAYFIVSLP-AGQLVKRISYKCGIVVGLIVAAIGCALFIPAASYRV-------YALFLGALFVLASGVTILQVAANPYVTILGKPETAASRLTLTQAFNSLGTTVAPVFGAVLILSAATDATVNAE-ADAVRFPYLLLALAFTVLAIIFAILKPPDVQED 219          
BLAST of FC910656 vs. ExPASy Swiss-Prot
Match: FUCP_ECOLI (L-fucose-proton symporter OS=Escherichia coli (strain K12) GN=fucP PE=1 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 8.980e-20
Identity = 66/225 (29.33%), Postives = 104/225 (46.22%), Query Frame = 3
Query:  204 KKLIFPIALITSLFFLWGFSYGLLDVLNKHFQNVLGITKLESTGLQVMYFGGGYLIFSPIAAEVL-KRFGYKICILMGLSLYSIGAVMFWPTAHFSSKENASASFGGFCACTLVIACGLATLETAANSYAVVIGDPKTASPRLQFCQAWNGVASFIGPLIASKAFFSG---KNADNL----------------TNVQFVYLGVACLGVAVAILFVFAKLPEVAEE 818
            +  I P AL+ SLFFLW  +  L D+L   FQ    +T  ++  +Q  ++ G ++I  PI A +L K+  YK  I+ GL LY++GA +FWP A          ++  F     +IA GL  LETAAN +  V+G   +   RL   Q +N   + I  +       S    ++ D L                 +VQ  Y+ +  + + VA+L +  K P +  +
Sbjct:   22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFII--PIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEI-------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD 237          
The following BLAST results are available for this feature:
BLAST of FC910656 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
FUCP_HAEIN7.584e-2733.62L-fucose permease OS=Haemophilus influenzae GN=fuc... [more]
GLUP_BRUAB1.339e-2333.50Glucose/galactose transporter OS=Brucella abortus ... [more]
GLUP_BRUA21.339e-2333.50Glucose/galactose transporter OS=Brucella abortus ... [more]
GLUP_HELPJ1.748e-2330.22Putative glucose/galactose transporter OS=Helicoba... [more]
GLUP_HELPY1.133e-2229.78Putative glucose/galactose transporter OS=Helicoba... [more]
GLUP_BRUME3.297e-2233.01Glucose/galactose transporter OS=Brucella melitens... [more]
FUCP_ECOLI8.980e-2029.33L-fucose-proton symporter OS=Escherichia coli (str... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA56BG07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA56BG07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC910656 ID=FC910656; Name=FC910656; organism=Citrus clementina; type=EST; length=911bp
AGCATATCCAAGTCTCTCATTCAGACTCTTCAGTCTTCTACCATCTTTCA
TTCTTTGAATAACACCTTCATTACCAAGGATCCAGCTTAATTGCTCCTGC
ACCCAACAGTCCTTTTACCACTTCTACATCAACAATCGTAGCAATGGCAG
GCGGCGGTATTCCCATCGCTACTACCACCATCGCTGGTGGCTTCCTCACT
GGAAAGAAGCTCATCTTCCCCATCGCCCTCATCACCTCGCTCTTCTTCCT
CTGGGGTTTCTCTTACGGTCTTCTCGATGTTTTGAACAAGCATTTCCAGA
ATGTCCTTGGCATTACCAAGCTCGAGTCTACTGGTCTCCAGGTCATGTAC
TTCGGCGGTGGTTACCTCATCTTCTCCCCCATCGCTGCTGAGGTCCTCAA
GAGATTCGGCTACAAGATCTGTATTCTCATGGGTCTTTCTCTCTACTCTA
TCGGTGCTGTCATGTTCTGGCCTACTGCTCACTTCTCCTCCAAGGAGAAC
GCCTCTGCATCCTTCGGTGGTTTCTGTGCTTGCACTTTGGTCATTGCTTG
CGGTCTTGCCACTCTTGAGACTGCTGCCAACTCCTACGCCGTTGTGATTG
GTGATCCCAAGACTGCCTCTCCTCGTCTTCAATTCTGCCAGGCCTGGAAC
GGTGTCGCTTCCTTCATTGGTCCCCTTATCGCTTCCAAGGCTTTCTTCTC
CGGCAAGAACGCTGACAACCTCACCAACGTCCAGTTCGTCTACCTCGGTG
TTGCCTGCCTCGGTGTCGCTGTTGCCATCCTGTTCGTCTTCGCCAAGCTC
CCCGAAGTCGCTGAGGAGGCCAAGCGCAACAACTCCCTTGTCGAGCCCGA
GCACGATATCGAGGGTCGCGAGATTGGCCAGGGTAGCATCTGGAAGGAGT
ACAACATGATC
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