FC910666

Overview
NameFC910666
Unique NameFC910666
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12268 contig Ccv1_Contig12268:1059..1764. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC910666 vs. ExPASy Swiss-Prot
Match: GP107_MOUSE (Protein GPR107 OS=Mus musculus GN=Gpr107 PE=2 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 4.791e-38
Identity = 72/148 (48.65%), Postives = 102/148 (68.92%), Query Frame = -3
Query:  255 LQEREKKVLMIVIPLQVLANVASVVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIGYLYFTRIVVFALKTIAAYKYQWVSNAAEELASLAFYIVIFYMFRPLETNEYFVL 698
            L +++KK+ MIVIPLQVLANVA ++I  T     ++  W     LVD++CC AI+FP+VWSIR L+E S TDGKAA NLAKL LFR +Y++++ Y+YFTRI+ F LK    ++++W+    +E A+L F+++  Y FRP   N Y  L
Sbjct:  361 LSDKDKKIFMIVIPLQVLANVAYIIIESTEEGTTEYGLWKDSLFLVDLLCCGAILFPVVWSIRHLQEASATDGKAAINLAKLRLFRHYYVLIVCYIYFTRIIAFLLKFAVPFQWKWLYQLLDETATLVFFVLTGYKFRPASDNPYLQL 508          
BLAST of FC910666 vs. ExPASy Swiss-Prot
Match: GP108_RAT (Protein GPR108 OS=Rattus norvegicus GN=Gpr108 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.541e-36
Identity = 72/148 (48.65%), Postives = 100/148 (67.57%), Query Frame = -3
Query:  255 LQEREKKVLMIVIPLQVLANVASVVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIGYLYFTRIVVFALKTIAAYKYQWVSNAAEELASLAFYIVIFYMFRPLETNEYFVL 698
            L ++EKK+  IVIPLQVLANVA +VI        D+  W ++  LVD+ICC AI+FP+VWSIR L++ S TDGK A NLAKL LFR +Y++VI Y+YFTRI+   L+    +++QW+     E ++LAF+++  Y F+P   N Y  L
Sbjct:  393 LSDKEKKIFGIVIPLQVLANVAYIVIESREEGASDYGLWKEILFLVDLICCGAILFPVVWSIRHLQDASGTDGKVAMNLAKLKLFRHYYVMVICYIYFTRIIAILLRVAVPFQWQWLYQLLVESSTLAFFVLTGYKFQPAGDNPYLQL 540          
BLAST of FC910666 vs. ExPASy Swiss-Prot
Match: GP108_HUMAN (Protein GPR108 OS=Homo sapiens GN=GPR108 PE=2 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.541e-36
Identity = 72/148 (48.65%), Postives = 101/148 (68.24%), Query Frame = -3
Query:  255 LQEREKKVLMIVIPLQVLANVASVVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIGYLYFTRIVVFALKTIAAYKYQWVSNAAEELASLAFYIVIFYMFRPLETNEYFVL 698
            L ++EKKV  IVIP+QVLANVA ++I        D+V W ++  LVD+ICC AI+FP+VWSIR L++ S TDGK A NLAKL LFR +Y++VI Y+YFTRI+   L+    +++QW+     E ++LAF+++  Y F+P   N Y  L
Sbjct:  360 LSDKEKKVFGIVIPMQVLANVAYIIIESREEGASDYVLWKEILFLVDLICCGAILFPVVWSIRHLQDASGTDGKVAVNLAKLKLFRHYYVMVICYVYFTRIIAILLQVAVPFQWQWLYQLLVEGSTLAFFVLTGYKFQPTGNNPYLQL 507          
BLAST of FC910666 vs. ExPASy Swiss-Prot
Match: GP108_BOVIN (Protein GPR108 OS=Bos taurus GN=GPR108 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.857e-36
Identity = 70/148 (47.30%), Postives = 100/148 (67.57%), Query Frame = -3
Query:  255 LQEREKKVLMIVIPLQVLANVASVVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIGYLYFTRIVVFALKTIAAYKYQWVSNAAEELASLAFYIVIFYMFRPLETNEYFVL 698
            L ++EKK+  IVIPLQVLANVA +V+        D+  W ++  LVD+ICC  I+FP+VWSIR L++ S TDGK A NLAKL LFR +Y++VI Y+YFTRI+   L+ +  +++QW+     E ++LAF+++  Y F+P   N Y  L
Sbjct:  365 LSDKEKKIFGIVIPLQVLANVAYIVMESREEGASDYGIWKEILFLVDLICCGTILFPVVWSIRHLQDASGTDGKVAVNLAKLKLFRHYYVMVICYIYFTRIIAILLRAVVPFQWQWLYQLLVEGSTLAFFVLTGYKFQPARDNPYLQL 512          
BLAST of FC910666 vs. ExPASy Swiss-Prot
Match: GP108_MOUSE (Protein GPR108 OS=Mus musculus GN=Gpr108 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.650e-36
Identity = 71/148 (47.97%), Postives = 100/148 (67.57%), Query Frame = -3
Query:  255 LQEREKKVLMIVIPLQVLANVASVVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIGYLYFTRIVVFALKTIAAYKYQWVSNAAEELASLAFYIVIFYMFRPLETNEYFVL 698
            L ++EKK+  IVIPLQVLANVA +VI        D+  W ++  LVD+ICC AI+FP+VWSIR L++ S TDGK A NLA+L LFR +Y++VI Y+YFTRI+   L+    +++QW+     E ++LAF+++  Y F+P   N Y  L
Sbjct:  386 LSDKEKKIFGIVIPLQVLANVAYIVIESREEGASDYGLWKEILFLVDLICCGAILFPVVWSIRHLQDASGTDGKVAVNLARLKLFRHYYVMVICYIYFTRIIAILLQVAVPFQWQWLYQLLVESSTLAFFVLTGYKFQPAGDNPYLQL 533          
BLAST of FC910666 vs. ExPASy Swiss-Prot
Match: GP107_HUMAN (Protein GPR107 OS=Homo sapiens GN=GPR107 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.547e-31
Identity = 72/196 (36.73%), Postives = 102/196 (52.04%), Query Frame = -3
Query:  255 LQEREKKVLMIVIPLQVLANVASVVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGK------------------------------------------------AARNLAKLTLFRQFYIVVIGYLYFTRIVVFALKTIAAYKYQWVSNAAEELASLAFYIVIFYMFRPLETNEYFVL 698
            L +++KK+ MIVIPLQVLANVA ++I  T     ++  W     LVD++CC AI+FP+VWSIR L+E S TDGK                                                AA NLAKL LFR +Y++++ Y+YFTRI+ F LK    ++++W+    +E A+L F+++  Y FRP   N Y  L
Sbjct:  362 LSDKDKKIFMIVIPLQVLANVAYIIIESTEEGTTEYGLWKDSLFLVDLLCCGAILFPVVWSIRHLQEASATDGKGDSMGPLQQRANLRAGSRIESHHFAQADLELLASSCPPASVSQRAGITAAINLAKLKLFRHYYVLIVCYIYFTRIIAFLLKLAVPFQWKWLYQLLDETATLVFFVLTGYKFRPASDNPYLQL 557          
The following BLAST results are available for this feature:
BLAST of FC910666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
GP107_MOUSE4.791e-3848.65Protein GPR107 OS=Mus musculus GN=Gpr107 PE=2 SV=2[more]
GP108_RAT1.541e-3648.65Protein GPR108 OS=Rattus norvegicus GN=Gpr108 PE=2... [more]
GP108_HUMAN1.541e-3648.65Protein GPR108 OS=Homo sapiens GN=GPR108 PE=2 SV=2[more]
GP108_BOVIN5.857e-3647.30Protein GPR108 OS=Bos taurus GN=GPR108 PE=2 SV=1[more]
GP108_MOUSE7.650e-3647.97Protein GPR108 OS=Mus musculus GN=Gpr108 PE=2 SV=1[more]
GP107_HUMAN2.547e-3136.73Protein GPR107 OS=Homo sapiens GN=GPR107 PE=2 SV=1[more]
back to top
Properties
Property NameValue
Genbank descriptionIC0AAA63DB01FM1 IVIA1 Citrus clementina cDNA clone IC0AAA63DB01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC910666 ID=FC910666; Name=FC910666; organism=Citrus clementina; type=EST; length=706bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCACAAAAAAATTCCCTTA
AAAGAGTACAGACCCTATATTAAAGATAAGAGTGATTATAACATAAAAAA
GTAAATACCCAAAAAGAAAAATCACGGGGCATCAACAGCAGACCTAATGC
TATCAGCTGTCACCCTTGCAAAGTATAGTCACAGTTTGCCAAATTCAAAG
CTCAAACTCTTCATCCCTGAGAGCCTGCTCCGCAGCCTCCTCTTCCTCCT
CATCAAGAACAAAATACTCATTGGTCTCCAGAGGCCTAAACATATAGAAA
ATCACAATATAAAATGCCAAACTCGCCAGCTCTTCAGCTGCATTGCTCAC
CCACTGGTACTTATAAGCAGCGATGGTCTTAAGCGCAAACACCACAATTC
GCGTGAAGTACAAGTAACCAATCACAACAATGTAAAACTGCCTGAACAAA
GTCAGCTTGGCCAAATTCCTCGCCGCCTTCCCGTCAGTCTTTGACGTCTC
TCTCAAAGACCGAATCGACCACACGATCGGGAAAATAATCGCACAACAGC
AGATAATATCCACCAACAAAAACACCTGATTCCAAGTCACCCAATCCTTA
ATAAACGGCCCAGTTTCACCAATCACAACTGATGCTACGTTGGCCAGAAC
CTGTAACGGAATCACAATCATCAACACCTTCTTCTCCCTCTCTTGCAAAA
ACGGCT
back to top