FC916144

Overview
NameFC916144
Unique NameFC916144
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length887
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4183 contig Ccv1_Contig4183:1..887. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC916144 vs. ExPASy Swiss-Prot
Match: LHTL2_ARATH (Lysine histidine transporter-like 2 OS=Arabidopsis thaliana GN=At1g67640 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.266e-19
Identity = 58/217 (26.73%), Postives = 105/217 (48.39%), Query Frame = 1
Query:  220 EKKQTYPAAHSMAQPTQPDPFLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPN-GSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKN 867
            EK Q+ P   +  +    D +L +    +A          +WW++ FH  TA+VG  +L+LPY    LGWG G T + +   +TFY+ + M ++  H    G+R  R+ EL     G     + V+  Q  +  GV I  ++  G+ L+ ++  L  +  +++   +I +   +  VL+ LP F+S+  ++L + ++SL YS +     +  G   N
Sbjct:    2 EKSQSSPTKDASTKQKNVDDWLPITSSRNA----------KWWYSAFHNVTAMVGAGVLSLPYAMSNLGWGPGVTIMIMSWLITFYTLWQMVQM--HEMVPGKRFDRYHELGQHAFGEKLGLWIVVPQQLIVEVGVDIVYMVTGGKSLKKIHDLLCTDCKNIRTTYWIMIFASIHFVLAHLPNFNSISIVSLAAAVMSLSYSTIAWATSVKKGVHPN 206          
BLAST of FC916144 vs. ExPASy Swiss-Prot
Match: LHT1_ARATH (Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.611e-18
Identity = 56/180 (31.11%), Postives = 91/180 (50.56%), Query Frame = 1
Query:  340 EWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECL----QIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKN 867
            +WW++ FH  TA+VG  +L LPY    LGWG G   L +   +T Y+ + M ++  H    G+R  R+ EL     G     Y V+  Q  +  GV I  ++  G+ L    +++  D  P   +KL  FI +   V  VLS LP F+S+  ++L + ++SL YS +   +  + G  ++
Sbjct:   37 KWWYSAFHNVTAMVGAGVLGLPYAMSQLGWGPGIAVLVLSWVITLYTLWQMVEM--HEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEIGVCIVYMVTGGKSLKKFHELVCDDCKP---IKLTYFIMIFASVHFVLSHLPNFNSISGVSLAAAVMSLSYSTIAWASSASKGVQED 211          
BLAST of FC916144 vs. ExPASy Swiss-Prot
Match: LHTL3_ARATH (Lysine histidine transporter-like 3 OS=Arabidopsis thaliana GN=At1g61270 PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 8.045e-18
Identity = 57/179 (31.84%), Postives = 90/179 (50.28%), Query Frame = 1
Query:  343 WWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECL----QIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKN 867
            W+++ FH  TAIVG  +L LPY    LGWG G   L +   +T Y+++ M ++ +  E  G+R  R+ EL     G     Y V+ +Q  + T   I  ++  GE L    Q+   D Y    LK+  FI +      VLS L  F+S+  ++LV+ ++S+ YS +   A +  G + N
Sbjct:   38 WYYSAFHNVTAIVGAGVLGLPYAMSELGWGPGVVVLILSWVITLYTFWQMIEMHEMFE--GKRFDRYHELGQAAFGKKLGLYIVVPLQLLVETSACIVYMVTGGESLKKIHQLSVGD-YECRKLKVRHFILIFASSQFVLSLLKNFNSISGVSLVAAVMSMSYSTIAWVASLTKGVANN 213          
BLAST of FC916144 vs. ExPASy Swiss-Prot
Match: LHT2_ARATH (Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.051e-17
Identity = 55/183 (30.05%), Postives = 94/183 (51.37%), Query Frame = 1
Query:  340 EWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPN-GSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDY 885
            +WW++ FH  TA+VG  +L+LPY    LGWG G T + +   +T Y+ + M ++  H    G+R  R+ EL     G     + V+  Q  +  GV I  ++  G  L+ ++  + P+   ++   +I +   V  V+S LP F+S+  I+L + ++SL YS +   A ++ G     P  DY
Sbjct:   32 KWWYSAFHNVTAMVGAGVLSLPYAMSNLGWGPGVTIMVMSWIITLYTLWQMVEM--HEIVPGKRLDRYHELGQHAFGEKLGLWIVVPQQLIVEVGVDIVYMVTGGASLKKVHQLVCPDCKEIRTTFWIMIFASVHFVISHLPNFNSISIISLAAAVMSLTYSTIAWAASVHKGVH---PDVDY 209          
BLAST of FC916144 vs. ExPASy Swiss-Prot
Match: LHTL1_ARATH (Lysine histidine transporter-like 1 OS=Arabidopsis thaliana GN=At1g48640 PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.517e-16
Identity = 58/199 (29.15%), Postives = 94/199 (47.24%), Query Frame = 1
Query:  283 LEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECL----QIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKN 867
            LE  ++ D           +WW++ FH  TA+VG  +L LP+    LGWG G   L +   +T Y+ + M ++  H    G+R  R+ EL     G     Y ++  Q  +  GV I  ++  G+ L    +I   D  P   ++L  FI +      VLS LP F+S+  ++LV+ ++SL YS +   A    G  ++
Sbjct:   25 LERQKEIDDWLPITSSRNAKWWYSTFHNVTAMVGAGVLGLPFFMAQLGWGPGIAVLILSWIITLYTLWQMVEM--HEMVPGKRFDRYHELGQFAFGERLGLYIIVPQQIIVEVGVCIVYMVTGGQSLKKFHEIACQDCSP---IRLSFFIMIFASSHFVLSHLPNFNSISGVSLVAAVMSLSYSTIAWTATAAKGVQED 218          
BLAST of FC916144 vs. ExPASy Swiss-Prot
Match: LHTL4_ARATH (Lysine histidine transporter-like 4 OS=Arabidopsis thaliana GN=At3g01760 PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.678e-15
Identity = 51/175 (29.14%), Postives = 88/175 (50.29%), Query Frame = 1
Query:  343 WWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNG----SLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAG 855
            W+++ FH  TAIVG  +L LPY    LGWG G   L +   +T Y+ + M ++ +  E  G+R  R+ EL     G     Y ++ +Q  +   V I  ++  G+ L+ ++     +G     L++  FI +      VLS L  F+S+  ++LV+ ++S+ YS +   A +  G
Sbjct:   36 WYYSAFHNVTAIVGAGVLGLPYAMSELGWGPGVVVLILSWVITLYTLWQMIEMHEMFE--GQRFDRYHELGQAAFGKKLGLYIIVPLQLLVEISVCIVYMVTGGKSLKNVHDLALGDGDKCTKLRIQHFILIFASSQFVLSLLKNFNSISGVSLVAAVMSVSYSTIAWVASLRKG 208          
BLAST of FC916144 vs. ExPASy Swiss-Prot
Match: LHTL5_ARATH (Lysine histidine transporter-like 5 OS=Arabidopsis thaliana GN=At1g71680 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 2.191e-15
Identity = 51/175 (29.14%), Postives = 90/175 (51.43%), Query Frame = 1
Query:  334 KGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPN-GSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAG 855
            + +W+++ FH  TA+VG  +L LP+    LGWG G   + +   +TFYS + M ++  H    G+R  R+ EL  +  G    ++ V+  Q  +     I   +  G+ L+     L+PN   ++   +I     + +VLSQ P F+S++ ++L++ L+S  YS +   A I  G
Sbjct:   36 EAKWYYSAFHNVTAMVGAGVLGLPFAMSQLGWGPGLVAIIMSWAITFYSLWQMVQL--HEAVPGKRLDRYPELGQEAFGPKLGYWIVMPQQLLVQIASDIVYNVTGGKSLKKFVELLFPNLEHIRQTYYILGFAALQLVLSQSPDFNSIKIVSLLAALMSFLYSMIASVASIAKG 208          
BLAST of FC916144 vs. ExPASy Swiss-Prot
Match: LHTL8_ARATH (Lysine histidine transporter-like 8 OS=Arabidopsis thaliana GN=AATL1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.568e-13
Identity = 52/180 (28.89%), Postives = 83/180 (46.11%), Query Frame = 1
Query:  304 DAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECL----QIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLV 831
            DA         G   +A FH   A VG   L LP  F  LGW  G   LT+      Y+ +++ ++  H    G+R+ R+ ELA    G     +  +F    ++ G     IL+ GE +    QI+   L  +  L   E+  + T + IVLSQLP  +S+  ++L+  + ++ YS +V
Sbjct:   85 DAWLPITESRNGNAHYAAFHNLNAGVGFQALVLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQL--HEAVPGKRYNRYVELAQAAFGERLGVWLALFPTVYLSAGTATALILIGGETMKLFFQIVCGPLCTSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAVTAITYSTMV 262          
BLAST of FC916144 vs. ExPASy Swiss-Prot
Match: AAP8_ARATH (Amino acid permease 8 OS=Arabidopsis thaliana GN=AAP8 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.267e-12
Identity = 49/178 (27.53%), Postives = 84/178 (47.19%), Query Frame = 1
Query:  337 GEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEK-AGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAG-ECLQIMYSDLYPNG------SLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACI 846
            G +W A  H+ TA++G  +L+L +    LGW  G T L     +T+Y+  L++      +   G R+  +  +    LG G         Q     GV IG  + A    + I  S+ Y +       S+  Y ++A   +V I+LSQLP FH L  +++++ ++S  Y+ + +G  I
Sbjct:   30 GTFWTASAHIITAVIGSGVLSLAWAIAQLGWVAGTTVLVAFAIITYYTSTLLADCYRSPDSITGTRNYNYMGVVRSYLG-GKKVQLCGVAQYVNLVGVTIGYTITASISLVAIGKSNCYHDKGHKAKCSVSNYPYMAAFGIVQIILSQLPNFHKLSFLSIIAAVMSFSYASIGIGLAI 206          
BLAST of FC916144 vs. ExPASy Swiss-Prot
Match: LHTL6_ARATH (Lysine histidine transporter-like 6 OS=Arabidopsis thaliana GN=At1g25530 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.961e-12
Identity = 52/176 (29.55%), Postives = 86/176 (48.86%), Query Frame = 1
Query:  340 EWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECL----QIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAG 855
            +WW++ FH  TA++G  +L+LPY    LGWG G   L +   +T  + + M ++  H    G R  R+ +L     G     + V+  Q  +  G  I  ++  G+CL    +I  S   P   ++   +I     V  +LSQLP F+S+  ++L + ++SL YS +  G  I  G
Sbjct:   31 KWWYSTFHTVTAMIGAGVLSLPYAMAYLGWGPGTFVLAMTWGLTLNTMWQMVQL--HECVPGTRFDRYIDLGRYAFGPKLGPWIVLPQQLIVQVGCNIVYMVTGGKCLKQFVEITCSTCTP---VRQSYWILGFGGVHFILSQLPNFNSVAGVSLAAAVMSLCYSTIAWGGSIAHG 201          
The following BLAST results are available for this feature:
BLAST of FC916144 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
LHTL2_ARATH4.266e-1926.73Lysine histidine transporter-like 2 OS=Arabidopsis... [more]
LHT1_ARATH3.611e-1831.11Lysine histidine transporter 1 OS=Arabidopsis thal... [more]
LHTL3_ARATH8.045e-1831.84Lysine histidine transporter-like 3 OS=Arabidopsis... [more]
LHT2_ARATH1.051e-1730.05Lysine histidine transporter 2 OS=Arabidopsis thal... [more]
LHTL1_ARATH1.517e-1629.15Lysine histidine transporter-like 1 OS=Arabidopsis... [more]
LHTL4_ARATH1.678e-1529.14Lysine histidine transporter-like 4 OS=Arabidopsis... [more]
LHTL5_ARATH2.191e-1529.14Lysine histidine transporter-like 5 OS=Arabidopsis... [more]
LHTL8_ARATH4.568e-1328.89Lysine histidine transporter-like 8 OS=Arabidopsis... [more]
AAP8_ARATH2.267e-1227.53Amino acid permease 8 OS=Arabidopsis thaliana GN=A... [more]
LHTL6_ARATH2.961e-1229.55Lysine histidine transporter-like 6 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA31DE12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA31DE12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC916144 ID=FC916144; Name=FC916144; organism=Citrus clementina; type=EST; length=887bp
CGATTTGCTTTCTTTTATCTGAACCCATCTTTGAATTGCATTTTTTTTCT
AAGTCTCTTTTTTTGCTGAAATATATATAAACAAAGAAACGAATCTGATG
TGATCATTACATACGCGATTCCCTTCCCTTCTTTTCGACGCCCCCGAGAA
TCTGGGTTTATATATTATTAATCCTCTCATTGTTTTTTTTTTAATCCTTT
TTTCTTCTTGTCATGAACTGAAAAAAAACAAACTTATCCAGCCGCCCACT
CAATGGCTCAGCCTACTCAACCGGACCCCTTCTTGGAGGTCTGCCGAGAC
TCCGATGCCGGCGCCGCCTTTGTTCTGGAGTCAAAAGGGGAGTGGTGGCA
CGCGGGGTTTCATCTAACGACGGCGATAGTGGGACCGACGATACTGACGC
TGCCGTACGTGTTTCGGGGGCTAGGCTGGGGCCTGGGATTTACATGCTTA
ACGGTGATGGGATTTGTCACCTTCTACTCTTATTATCTAATGTCTAAGGT
TCTAGACCACTGTGAGAAAGCTGGTCGTCGCCACATCCGATTCCGCGAGC
TTGCCGCCGACGTTTTAGGGTCCGGATGGATGTTTTATTTTGTAATATTT
ATTCAAACGGCGATCAACACTGGAGTAGGAATAGGAGCAATTTTACTTGC
GGGAGAATGCCTACAGATAATGTATTCAGATCTTTATCCCAACGGGTCTT
TGAAACTGTACGAGTTCATAGCAATGGTGACAGTGGTAATGATAGTTCTC
TCTCAGCTTCCAACCTTCCACTCCCTCAGACACATCAACCTTGTCTCTCT
GTTGCTTAGCTTGGGCTACAGTTTCCTTGTAGTTGGTGCTTGTATTAATG
CAGGATTCTCTAAAAATGCTCCTCCAAAGGACTATTC
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