FC916149

Overview
NameFC916149
Unique NameFC916149
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length882
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13906 contig Ccv1_Contig13906:1..882. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC916149 vs. ExPASy Swiss-Prot
Match: PSNA_ARATH (Presenilin-like protein At1g08700 OS=Arabidopsis thaliana GN=At1g08700 PE=2 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 3.395e-77
Identity = 155/249 (62.25%), Postives = 178/249 (71.49%), Query Frame = 3
Query:  144 MESSILDSIGSEIIGVMTPXXXXXXXXXXXXXXXXXXEQSLSGASDP-FRTAANLVYLERPDDSSTQKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTKLPEWTTWXXXXXXXXXXXXXXXXPGEPLKLLVELASSRDEELPALVYEARPTVS--DNERNRRSGLRFL 881
            MESSILDS+G EIIGVM P                    SLS  SDP  R+AANL+Y+E P DS+T KLEG++ NA+VFV+LIA VTF+LVLL+YYNFTNFLK+Y+RFSAFFVLGTMGG            PVD+ TCF+LLFNFTI+G LS+F+GGIPI+LRQ YMV MGI++AAWFTKLPEWTTW                PG PLKLLVELASSRDEELPA+VYEARPTVS  +  RNR S LR L
Sbjct:    1 MESSILDSLGVEIIGVMAPVSICMFLVVLLTY-------SLSVTSDPQIRSAANLIYIENPSDSTTVKLEGSLANAIVFVVLIAAVTFILVLLFYYNFTNFLKHYMRFSAFFVLGTMGGAIFLSIIQHFSIPVDSITCFILLFNFTILGTLSVFAGGIPIVLRQCYMVVMGIVVAAWFTKLPEWTTWFILVALALYDLVAVLAPGGPLKLLVELASSRDEELPAMVYEARPTVSSGNQRRNRGSSLRAL 242          
BLAST of FC916149 vs. ExPASy Swiss-Prot
Match: PSNB_ARATH (Presenilin-like protein At2g29900 OS=Arabidopsis thaliana GN=At2g29900 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.178e-45
Identity = 99/235 (42.13%), Postives = 134/235 (57.02%), Query Frame = 3
Query:  153 SILDSIGSEIIGVMTPXXXXXXXXXXXXXXXXXXEQSLSGASDPFRTAANLVYLERPDDSSTQKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTKLPEWTTWXXXXXXXXXXXXXXXXPGEPLKLLVELASSRDEELPALVYEARPTVSDNERN 857
            SILDS+G E+I ++TP                    S S +     TAA   Y E   DSS  K  GA+LN++VFV  I + TF+LVLL+Y     FLK Y+ FSAF VLG +GG            P+D+ T  +LLFNF++VGV ++F     IL+ Q Y+V +G+++A +FT LPEWTTW                P  PL+LLVE+A SRDE++PALVYEARP + ++ R+
Sbjct:    9 SILDSLGEELIAILTPVSICMFTVVLLVCILNSDPSSSSASFSSIATAA---YSESDSDSSWDKFVGALLNSVVFVAAITVATFVLVLLFYLRCVKFLKFYMGFSAFIVLGNLGGEILVLLIDRFRFPIDSITFLILLFNFSVVGVFAVFMSKFSILITQGYLVWIGVLVAYFFTLLPEWTTWVLLVALALYDIAAVLLPVGPLRLLVEMAISRDEDIPALVYEARPVIRNDSRS 240          
BLAST of FC916149 vs. ExPASy Swiss-Prot
Match: PSNA_DICDI (Presenilin-A OS=Dictyostelium discoideum GN=psenA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.237e-20
Identity = 47/158 (29.75%), Postives = 89/158 (56.33%), Query Frame = 3
Query:  354 AVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTKLPEWTTWXXXXXXXXXXXXXXXXPGEPLKLLVELASSRDEELPALVYEA 827
            +V+N+L+F+ +I + T ++V+LY +     L  ++  ++  +LG  GG             +D  T  ++++NF++ G++ +F    P LL Q Y++ + ++MA +F++LP+WTTW                PG PL++L+E A  R+E +PA++Y A
Sbjct:  227 SVVNSLIFLAVIILSTTIMVVLYKFKLMKALYAWLMGTSILLLGVFGGFLFLILLAYLNLGLDYVTFVIVVWNFSVGGIVCIFWYS-PKLLNQGYLISISVLMALFFSRLPDWTTWGILSIVSIYDIFAVLCPGGPLRILIETAQKRNENIPAMIYNA 383          
BLAST of FC916149 vs. ExPASy Swiss-Prot
Match: PSN1_XENLA (Presenilin-1 OS=Xenopus laevis GN=psen1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.664e-18
Identity = 58/184 (31.52%), Postives = 94/184 (51.09%), Query Frame = 3
Query:  288 RTAANLVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGEPLKLLVELASSRDEEL-PALVYEA 827
            R    L+Y    +D+ +  Q+   ++LNA + + +I ++T LLV+LY Y     +  ++  S+  +L                  VD  T  +L++NF +VG++ +   G P+LL+QAY++ +  +MA  F K LPEWTTW                P  PL++LVE A  R+E L PAL+Y +
Sbjct:   74 RFDGQLIYTPFTEDTESVGQRALNSILNATIMISVIIVMTILLVVLYKYRCYKVIHGWLIISSLLLLFFFSYIYLGEVFKTYNVAVDYITLALLIWNFGVVGMICIHWKG-PLLLQQAYLIMISALMALVFIKYLPEWTTWLILAVISVYDLVAVLSPKGPLRMLVETAQERNETLFPALIYSS 256          
BLAST of FC916149 vs. ExPASy Swiss-Prot
Match: PSN1_MICMU (Presenilin-1 OS=Microcebus murinus GN=PSEN1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.039e-17
Identity = 59/184 (32.07%), Postives = 93/184 (50.54%), Query Frame = 3
Query:  288 RTAANLVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGEPLKLLVELASSRDEEL-PALVYEA 827
            R    L+Y    +D+ T  Q+   +VLNA + + +I ++T LLV+LY Y     +  ++  S+  +L                  VD  T  +L++NF +VG++S+   G P+ L+QAY++ +  +MA  F K LPEWT W                P  PL++LVE A  R+E L PAL+Y +
Sbjct:  108 RKDGQLIYTPFTEDTETVGQRALHSVLNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLFFFSFIYLGEVFKTYNVAVDYITVALLIWNFGVVGMISIHWKG-PLRLQQAYLIMISALMALVFIKYLPEWTAWLILAVISVYDLVAVLCPKGPLRMLVETAQERNETLFPALIYSS 290          
BLAST of FC916149 vs. ExPASy Swiss-Prot
Match: PSN1_PONAB (Presenilin-1 OS=Pongo abelii GN=PSEN1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.357e-17
Identity = 58/184 (31.52%), Postives = 93/184 (50.54%), Query Frame = 3
Query:  288 RTAANLVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGEPLKLLVELASSRDEEL-PALVYEA 827
            R    L+Y    +D+ T  Q+   ++LNA + + +I ++T LLV+LY Y     +  ++  S+  +L                  VD  T  +L++NF +VG++S+   G P+ L+QAY++ +  +MA  F K LPEWT W                P  PL++LVE A  R+E L PAL+Y +
Sbjct:  108 RKDGQLIYTPFTEDTETVGQRALHSILNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLFFFSFIYLGEVFKTYNVAVDYITVALLIWNFGVVGMISIHWKG-PLRLQQAYLIMISALMALVFIKYLPEWTAWLILAVISVYDLVAVLCPKGPLRMLVETAQERNETLFPALIYSS 290          
BLAST of FC916149 vs. ExPASy Swiss-Prot
Match: PSN1_MACFA (Presenilin-1 OS=Macaca fascicularis GN=PSEN1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.357e-17
Identity = 58/184 (31.52%), Postives = 93/184 (50.54%), Query Frame = 3
Query:  288 RTAANLVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGEPLKLLVELASSRDEEL-PALVYEA 827
            R    L+Y    +D+ T  Q+   ++LNA + + +I ++T LLV+LY Y     +  ++  S+  +L                  VD  T  +L++NF +VG++S+   G P+ L+QAY++ +  +MA  F K LPEWT W                P  PL++LVE A  R+E L PAL+Y +
Sbjct:  108 RKDGQLIYTPFTEDTETVGQRALHSILNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLFFFSFKNLGEVFKTYNVAVDYITVALLIWNFGVVGMISIHWKG-PLRLQQAYLIMISALMALVFIKYLPEWTAWLILAVISVYDLVAVLCPKGPLRMLVETAQERNETLFPALIYSS 290          
BLAST of FC916149 vs. ExPASy Swiss-Prot
Match: PSN1_HUMAN (Presenilin-1 OS=Homo sapiens GN=PSEN1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.357e-17
Identity = 58/184 (31.52%), Postives = 93/184 (50.54%), Query Frame = 3
Query:  288 RTAANLVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGEPLKLLVELASSRDEEL-PALVYEA 827
            R    L+Y    +D+ T  Q+   ++LNA + + +I ++T LLV+LY Y     +  ++  S+  +L                  VD  T  +L++NF +VG++S+   G P+ L+QAY++ +  +MA  F K LPEWT W                P  PL++LVE A  R+E L PAL+Y +
Sbjct:  108 RKDGQLIYTPFTEDTETVGQRALHSILNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLFFFSFIYLGEVFKTYNVAVDYITVALLIWNFGVVGMISIHWKG-PLRLQQAYLIMISALMALVFIKYLPEWTAWLILAVISVYDLVAVLCPKGPLRMLVETAQERNETLFPALIYSS 290          
BLAST of FC916149 vs. ExPASy Swiss-Prot
Match: PSN1_MOUSE (Presenilin-1 OS=Mus musculus GN=Psen1 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.023e-17
Identity = 58/184 (31.52%), Postives = 93/184 (50.54%), Query Frame = 3
Query:  288 RTAANLVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGEPLKLLVELASSRDEEL-PALVYEA 827
            R    L+Y    +D+ T  Q+   ++LNA + + +I I+T LLV+LY Y     +  ++  S+  +L                  VD  T  +L++NF +VG++++   G P+ L+QAY++ +  +MA  F K LPEWT W                P  PL++LVE A  R+E L PAL+Y +
Sbjct:  108 RKDGQLIYTPFTEDTETVGQRALHSILNAAIMISVIVIMTILLVVLYKYRCYKVIHAWLIISSLLLLFFFSFIYLGEVFKTYNVAVDYVTVALLIWNFGVVGMIAIHWKG-PLRLQQAYLIMISALMALVFIKYLPEWTAWLILAVISVYDLVAVLCPKGPLRMLVETAQERNETLFPALIYSS 290          
BLAST of FC916149 vs. ExPASy Swiss-Prot
Match: PSN1_RAT (Presenilin-1 OS=Rattus norvegicus GN=Psen1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.948e-17
Identity = 57/184 (30.98%), Postives = 93/184 (50.54%), Query Frame = 3
Query:  288 RTAANLVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGEPLKLLVELASSRDEEL-PALVYEA 827
            R    L+Y    +D+ T  Q+   ++LNA + + +I ++T LLV+LY Y     +  ++  S+  +L                  VD  T  +L++NF +VG++++   G P+ L+QAY++ +  +MA  F K LPEWT W                P  PL++LVE A  R+E L PAL+Y +
Sbjct:  108 RKDGQLIYTPFTEDTETVGQRALHSILNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIVSSLLLLFFFSFIYLGEVFKTYNVAVDYITVALLIWNFGVVGMIAIHWKG-PLRLQQAYLIMISALMALVFIKYLPEWTAWLILAVISVYDLVAVLCPKGPLRMLVETAQERNETLFPALIYSS 290          
The following BLAST results are available for this feature:
BLAST of FC916149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
PSNA_ARATH3.395e-7762.25Presenilin-like protein At1g08700 OS=Arabidopsis t... [more]
PSNB_ARATH1.178e-4542.13Presenilin-like protein At2g29900 OS=Arabidopsis t... [more]
PSNA_DICDI2.237e-2029.75Presenilin-A OS=Dictyostelium discoideum GN=psenA ... [more]
PSN1_XENLA4.664e-1831.52Presenilin-1 OS=Xenopus laevis GN=psen1 PE=2 SV=1[more]
PSN1_MICMU1.039e-1732.07Presenilin-1 OS=Microcebus murinus GN=PSEN1 PE=2 S... [more]
PSN1_PONAB1.357e-1731.52Presenilin-1 OS=Pongo abelii GN=PSEN1 PE=2 SV=1[more]
PSN1_MACFA1.357e-1731.52Presenilin-1 OS=Macaca fascicularis GN=PSEN1 PE=2 ... [more]
PSN1_HUMAN1.357e-1731.52Presenilin-1 OS=Homo sapiens GN=PSEN1 PE=1 SV=1[more]
PSN1_MOUSE3.023e-1731.52Presenilin-1 OS=Mus musculus GN=Psen1 PE=1 SV=1[more]
PSN1_RAT3.948e-1730.98Presenilin-1 OS=Rattus norvegicus GN=Psen1 PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA15BH01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA15BH01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC916149 ID=FC916149; Name=FC916149; organism=Citrus clementina; type=EST; length=882bp
TTCGAAAAGCATCATAAGATTATTCCCCCTAATCGCACTTCTCCCATTTG
ATTGATGATAGATTCTATCTTTCGTCCCAGAAGAAAAGAAAAAGAAAAAG
AAAGAAAAAAAAATGCAGTGACGAAAGTCGTTAGGTAGCAGCAATGGAGT
CGAGCATTTTAGATAGCATCGGAAGCGAGATCATCGGCGTGATGACGCCG
GTCTCCCTCTGCATGCTCCTTGTGGTTCTCTTAGTCTACTCTCTTTCCCC
ATCGGAGCAGTCCTTGTCCGGTGCCTCCGATCCATTCCGGACCGCCGCCA
ATCTCGTGTACCTCGAACGCCCCGACGACTCCTCCACCCAGAAGCTCGAG
GGCGCCGTCCTCAACGCCCTTGTCTTCGTCATCCTCATCGCCATCGTCAC
TTTCCTCCTCGTCCTCCTTTATTACTATAACTTCACCAACTTCTTGAAGA
ATTACGTGCGCTTCTCCGCCTTTTTCGTCTTAGGTACAATGGGAGGTTCG
ATCTTTTTGTCGATCATTCAGCAATTCTCTATACCTGTCGATGCATTTAC
ATGCTTTGTACTGCTTTTTAACTTCACTATTGTGGGTGTGTTGTCTCTGT
TTTCGGGTGGGATACCGATTCTGTTGAGGCAAGCGTATATGGTGTGCATG
GGAATCATTATGGCAGCCTGGTTTACAAAGCTGCCCGAGTGGACTACGTG
GGCCTTGCTACTGGCATTGGCTTTATATGATCTGTTTGCAGTTTTGGCGC
CTGGTGAGCCCCTTAAGTTGTTGGTGGAGTTGGCCTCTAGTCGAGATGAG
GAACTTCCTGCTTTGGTGTATGAAGCTCGGCCAACGGTTTCAGATAATGA
GAGAAACCGAAGATCAGGCTTGAGGTTTTTGC
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