FC916151

Overview
NameFC916151
Unique NameFC916151
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length920
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC916151_ssr85 microsatellite FC916151_ssr85:85..104. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13907 contig Ccv1_Contig13907:1..920. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC916151 vs. ExPASy Swiss-Prot
Match: INT3_DANRE (Integrator complex subunit 3 OS=Danio rerio GN=ints3 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.398e-12
Identity = 46/162 (28.40%), Postives = 82/162 (50.62%), Query Frame = 3 
Query:  435 LSIRQAFDALESKLRPPFALTVPNPQEYMQLNRAILYGVLCEPHFAKVHIKHLHAIVTDGYAXXXXXXXXXXXXXXXXXFDSVKNQLIWVTKEMINVSAVGFDGLLVSLLRQIVGGDFSDGNLWLCFELVSLFLGKWDCLLEEEPLVLSNALYTFLSLLADH 920
            LS R+A DAL + +          PQ++ ++   +   +L EP  A+   + L  +  DG                    D  + QL+W+ +E++    +G DG+L++L++QI GGD S  NLWL   ++ + + + + +L+   LV + +LYT+L L+ DH
Sbjct:   44 LSEREANDALTAHV-------CKGPQQHEEVCLGLFTLLLTEPPQAQRCYRDLTLVNRDGMNVVLMKINQILMEKFLKLQDVCRTQLVWLVRELVKSGVIGADGVLMTLMKQIAGGDISSKNLWLAENVLDILVDQREWVLKSGMLV-AMSLYTYLRLIVDH 197
The following BLAST results are available for this feature:
BLAST of FC916151 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
INT3_DANRE1.398e-1228.40Integrator complex subunit 3 OS=Danio rerio GN=int... [more]
back to top
Properties
Property NameValue
Genbank descriptionIC0AAA87AF09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA87AF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC916151 ID=FC916151; Name=FC916151; organism=Citrus clementina; type=EST; length=920bp
CCGAATCGGATGGAAGAAAACCTGAAACAAACCCTAATTCCAAATTGGAA
GAACAAATACTCAAACAGCGACAAACAGCGAAGAGTCCGTCCGTCCGTCC
GTCCGTCGCTGCAACCCGTAATTCGACTTCCTGTTGCCATGTACCGGCGC
CGCTGAGTACGTTCGTCGTCCTCACTCGTCACGCTGCCTTGCTTCCACTT
CGGCTGTCCCAAGTAAATATGGTGAAGAACAACATCGTTGAACTCTAAGG
AAGGGTACTGGTGATTCTCATTCTGACAAGATGGCAAATTCCCTCACTGA
ATTGAAACCCTGGCTGGTATAAGGTATAAGGTATAAGGTATAAGGTATCA
GTATCCGTTTTATTTGCATTTTTCCTCAGCATGGCTTCAAAACTAATTGG
AACAGCACCTCGTGAAGCTGAAAATCCTTATGAACTCTCTATAAGGCAGG
CTTTTGATGCTCTTGAATCAAAATTGCGACCTCCTTTTGCTTTAACAGTC
CCAAATCCACAAGAATACATGCAGCTCAATAGGGCTATTCTTTACGGGGT
TTTATGTGAACCTCATTTTGCCAAAGTTCATATTAAGCATTTACATGCTA
TAGTCACTGATGGGTATGCTTTATTTGTGAGTTTGCTTGTTAAAGTTGTT
AAGGAGTTGTATGTTAAACTGTTTGATTCTGTGAAGAATCAGTTGATTTG
GGTTACGAAGGAGATGATTAATGTTTCGGCTGTAGGGTTTGATGGTTTGT
TAGTGAGTTTGTTGAGGCAAATTGTTGGTGGAGATTTTAGTGATGGGAAT
TTGTGGTTGTGTTTTGAGTTGGTGAGCCTGTTTTTGGGTAAATGGGATTG
TTTGTTAGAGGAGGAACCGTTGGTTCTGAGTAATGCTTTGTATACTTTTC
TTTCTTTATTAGCTGATCAT
back to top