FC917085

Overview
NameFC917085
Unique NameFC917085
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length916
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3326 contig Ccv1_Contig3326:1..916. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC917085 vs. ExPASy Swiss-Prot
Match: LCYE_ARATH (Lycopene epsilon cyclase, chloroplastic OS=Arabidopsis thaliana GN=LUT2 PE=1 SV=2)

HSP 1 Score: 322.013 bits (824), Expect = 2.943e-87
Identity = 165/235 (70.21%), Postives = 193/235 (82.13%), Query Frame = 3
Query:  225 CLGARNFAAMAVSPFPTGRTRRKALRVRTKQSAVDCNHSSYKVTARATSSNAGSESCVAVKE-----EDYIKAGGSQLVFVQMQQNKSMDKQSKLADKLPPISIGNGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGRVSRHLLHEELLRKCVESGVSYLSSKVESITESTSGHRLVPCEHDMIV 914
            C+GARNFAAMAVS FP+   RRK   V+ + S  +       V A    S+ GSESCVAV+E     ED++KAGGS+++FVQMQQNK MD+QSKL DKLPPISIG+G LDLVVIGCGPAGLALAAESAKLGL VGLIGPDLPFTNNYGVWEDEF DLGL+ CIEHVWR+T+VY+D+D+PI IGRAYGRVSR LLHEELLR+CVESGVSYLSSKV+SITE++ G RLV C+ + ++
Sbjct:    3 CVGARNFAAMAVSTFPSWSCRRKFPVVK-RYSYRNIRFGLCSVRASGGGSS-GSESCVAVREDFADEEDFVKAGGSEILFVQMQQNKDMDEQSKLVDKLPPISIGDGALDLVVIGCGPAGLALAAESAKLGLKVGLIGPDLPFTNNYGVWEDEFNDLGLQKCIEHVWRETIVYLDDDKPITIGRAYGRVSRRLLHEELLRRCVESGVSYLSSKVDSITEASDGLRLVACDDNNVI 235          
BLAST of FC917085 vs. ExPASy Swiss-Prot
Match: LCYE_SOLLC (Lycopene epsilon cyclase, chloroplastic OS=Solanum lycopersicum GN=CRTL-E-1 PE=2 SV=1)

HSP 1 Score: 298.516 bits (763), Expect = 3.485e-80
Identity = 151/235 (64.26%), Postives = 184/235 (78.30%), Query Frame = 3
Query:  225 CLGARNFAAMAVSPFPTGRTRRKALRVRTKQSAVDCNHSSYKVTARATSSNAGSESCVAVKE-----EDYIKAGGSQLVFVQMQQNKSMDKQSKLADKLPPISIGNGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGRVSRHLLHEELLRKCVESGVSYLSSKVESITESTSGHRLVPCEHDMIV 914
            C+G +N  AMAV   P  R  R +     ++ ++   +  Y+      +S++GS+SCV  KE     EDYIKAGGSQLVFVQMQQ K MD+QSKL+D+L  IS G  +LDLVVIGCGPAGLALAAESAKLGLNVGL+GPDLPFTNNYGVWEDEF+DLGL+ CIEHVWRDT+VY+D+DEPILIGRAYGRVSRH LHEELL++CVE+GV YL+SKV+ I E+T+G  LV CE D+++
Sbjct:    3 CVGVQNVGAMAVLTRP--RLNRWSGGELCQEKSIFLAYEQYESKC---NSSSGSDSCVVDKEDFADEEDYIKAGGSQLVFVQMQQKKDMDQQSKLSDELRQISAGQTVLDLVVIGCGPAGLALAAESAKLGLNVGLVGPDLPFTNNYGVWEDEFKDLGLQACIEHVWRDTIVYLDDDEPILIGRAYGRVSRHFLHEELLKRCVEAGVLYLNSKVDRIVEATNGQSLVECEGDVVI 232          
BLAST of FC917085 vs. ExPASy Swiss-Prot
Match: NXS_SOLTU (Neoxanthin synthase, chloroplastic OS=Solanum tuberosum GN=NXS PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.806e-21
Identity = 57/141 (40.43%), Postives = 79/141 (56.03%), Query Frame = 3
Query:  435 SQLVFVQMQQNKSMDKQSKLADKLPPISIGNGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPD--LPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGRVSRHLLHEELLRKCVESGVSYLSSKV 851
            S L    + + +S D    L D     + G    D+++IG GPAGL LA   +K G+ V  + P     + NNYGVW DEF +LGLE C++H W  T V+I++ +   +GR YGRVSR  L   LL  CVE+ V +  +KV
Sbjct:   53 SFLDLAPISKPESFDVNISLVDP----NSGRAQFDVIIIGAGPAGLRLAEHVSKYGIKVCCVDPSPLSMWPNNYGVWVDEFENLGLEDCLDHKWPMTCVHINDHKTKYLGRPYGRVSRKKLKLRLLNSCVENRVKFYKAKV 189          
BLAST of FC917085 vs. ExPASy Swiss-Prot
Match: LCYB_ARATH (Lycopene beta cyclase, chloroplastic OS=Arabidopsis thaliana GN=LCY1 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.819e-20
Identity = 57/167 (34.13%), Postives = 95/167 (56.89%), Query Frame = 3
Query:  399 AVKEEDYIKAGGSQLV-FVQMQQNKSMDKQSKLADKLPPISIGNGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPD--LPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGRVSRHLLHEELLRKCVESGVSYLSSKVESITESTSGHRLV 890
            A+K    + +G + L+  V   + +++D +  L D     +  + ++DL ++G GPAGLA+A + ++ GL+V  I P   L + NNYGVW DEF  + L  C++  W   VVY+DE     + R YGRV+R  L  ++L+KC+ +GV +  SKV ++    +   +V
Sbjct:   42 AIKIVSSVVSGSAALLDLVPETKKENLDFELPLYD-----TSKSQVVDLAIVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVYVDEGVKKDLSRPYGRVNRKQLKSKMLQKCITNGVKFHQSKVTNVVHEEANSTVV 203          
BLAST of FC917085 vs. ExPASy Swiss-Prot
Match: LCYB_TOBAC (Lycopene beta cyclase, chloroplastic OS=Nicotiana tabacum GN=LCY1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.103e-20
Identity = 54/140 (38.57%), Postives = 83/140 (59.29%), Query Frame = 3
Query:  480 KQSKLADKLPPISIGNG-ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPD--LPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGRVSRHLLHEELLRKCVESGVSYLSSKVESITESTSGHRLV 890
            K+  L  +LP      G ++DL V+G GPAGLA+A + ++ GL+V  I P   L + NNYGVW DEF  + L  C++  W  TVVYID++    + R YGRV+R  L  ++++KC+ +GV +  +KV  +    +   L+
Sbjct:   65 KKENLDFELPMYDPSKGLVVDLAVVGGGPAGLAVAQQVSEAGLSVVSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDATWSGTVVYIDDNTTKDLDRPYGRVNRKQLKSKMMQKCILNGVKFHHAKVIKVIHEEAKSMLI 204          
BLAST of FC917085 vs. ExPASy Swiss-Prot
Match: LCYB_SOLLC (Lycopene beta cyclase, chloroplastic OS=Solanum lycopersicum GN=LCY1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 9.028e-20
Identity = 53/140 (37.86%), Postives = 82/140 (58.57%), Query Frame = 3
Query:  480 KQSKLADKLPPISIGNGIL-DLVVIGCGPAGLALAAESAKLGLNVGLIGPD--LPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGRVSRHLLHEELLRKCVESGVSYLSSKVESITESTSGHRLV 890
            K+  L  +LP      G++ DL V+G GPAGLA+A + ++ GL+V  I P+  L + NNYGVW DEF  + L  C++  W    VYID++    + R YGRV+R  L  ++++KC+ +GV +  +KV  +    S   L+
Sbjct:   65 KKENLDFELPMYDPSKGVVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPNPKLIWPNNYGVWVDEFEAMDLLDCLDATWSGAAVYIDDNTAKDLHRPYGRVNRKQLKSKMMQKCIMNGVKFHQAKVIKVIHEESKSMLI 204          
BLAST of FC917085 vs. ExPASy Swiss-Prot
Match: LCYB_CAPAN (Lycopene beta cyclase, chloroplastic/chromoplastic OS=Capsicum annuum GN=LCY1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 9.028e-20
Identity = 57/161 (35.40%), Postives = 90/161 (55.90%), Query Frame = 3
Query:  432 GSQLVFVQMQQNKSMD-----KQSKLADKLPPISIGNGIL-DLVVIGCGPAGLALAAESAKLGLNVGLIGPD--LPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGRVSRHLLHEELLRKCVESGVSYLSSKVESITESTSGHRLV 890
            GS+ V V+   +  ++     K+  L  +LP      G++ DL V+G GPAGLA+A + ++ GL+V  I P+  L + NNYGVW DEF  + L  C++  W    VYID+     + R YGRV+R  L  ++++KC+ +GV +  +KV  +    S   L+
Sbjct:   42 GSRSVCVKASSSALLELVPETKKENLDFELPMYDPSKGVVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPNPKLIWPNNYGVWVDEFEAMDLLDCLDATWSGAAVYIDDKTTKDLNRPYGRVNRKQLKSKMMQKCILNGVKFHQAKVIKVIHEESKSMLI 202          
BLAST of FC917085 vs. ExPASy Swiss-Prot
Match: CCS_CAPAN (Capsanthin/capsorubin synthase, chromoplast OS=Capsicum annuum GN=CCS PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.011e-19
Identity = 48/107 (44.86%), Postives = 67/107 (62.62%), Query Frame = 3
Query:  537 DLVVIGCGPAGLALAAESAKLGLNVGLIGPD--LPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGRVSRHLLHEELLRKCVESGVSYLSSKV 851
            D+++IG GPAGL LA + +K G+ V  + P     + NNYGVW DEF  LGLE C++H W  + V+I + +   + R YGRVSR  L  +LL  CVE+ V +  +KV
Sbjct:   83 DVIIIGTGPAGLRLAEQVSKYGIKVCCVDPSPLSMWPNNYGVWVDEFEKLGLEDCLDHKWPVSCVHISDHKTKYLDRPYGRVSRKKLKLKLLNSCVENRVKFYKAKV 189          
BLAST of FC917085 vs. ExPASy Swiss-Prot
Match: CCS_CITSI (Capsanthin/capsorubin synthase, chromoplast OS=Citrus sinensis GN=CCS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.793e-18
Identity = 47/108 (43.52%), Postives = 69/108 (63.89%), Query Frame = 3
Query:  537 DLVVIGCGPAGLALAAE-SAKLGLNVGLIGPDLPFT--NNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGRVSRHLLHEELLRKCVESGVSYLSSKV 851
            D+++IG GPAGL LA + S++  + V  + P    T  NNYGVW DEF D+GL  C++  W  T V+I++ +   + R YGRVSR++L  +LL  CV +GV +  +KV
Sbjct:   87 DVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRPYGRVSRNILKTKLLENCVSNGVKFHKAKV 194          
BLAST of FC917085 vs. ExPASy Swiss-Prot
Match: LCYB_NARPS (Lycopene beta cyclase, chloroplastic/chromoplastic OS=Narcissus pseudonarcissus GN=LCY1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.340e-14
Identity = 42/108 (38.89%), Postives = 63/108 (58.33%), Query Frame = 3
Query:  534 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPD--LPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGRVSRHLLHEELLRKCVESGVSYLSSKV 851
            LDL V+G GP   + +  S   GL+V  I P+  L + NNYGVW DEF D+ L  C++  W   +VY+D+     + R Y RV+R  L  ++++KCV +GV +  + V
Sbjct:   88 LDLAVVGGGPLARSCST-SLGGGLSVVSIDPNPKLIWPNNYGVWVDEFEDMDLLDCLDATWSGAIVYVDDRSTKNLSRPYARVNRKNLKSKMMKKCVSNGVRFHQATV 194          
The following BLAST results are available for this feature:
BLAST of FC917085 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
LCYE_ARATH2.943e-8770.21Lycopene epsilon cyclase, chloroplastic OS=Arabido... [more]
LCYE_SOLLC3.485e-8064.26Lycopene epsilon cyclase, chloroplastic OS=Solanum... [more]
NXS_SOLTU2.806e-2140.43Neoxanthin synthase, chloroplastic OS=Solanum tube... [more]
LCYB_ARATH1.819e-2034.13Lycopene beta cyclase, chloroplastic OS=Arabidopsi... [more]
LCYB_TOBAC3.103e-2038.57Lycopene beta cyclase, chloroplastic OS=Nicotiana ... [more]
LCYB_SOLLC9.028e-2037.86Lycopene beta cyclase, chloroplastic OS=Solanum ly... [more]
LCYB_CAPAN9.028e-2035.40Lycopene beta cyclase, chloroplastic/chromoplastic... [more]
CCS_CAPAN2.011e-1944.86Capsanthin/capsorubin synthase, chromoplast OS=Cap... [more]
CCS_CITSI3.793e-1843.52Capsanthin/capsorubin synthase, chromoplast OS=Cit... [more]
LCYB_NARPS4.340e-1438.89Lycopene beta cyclase, chloroplastic/chromoplastic... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA26AH05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA26AH05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917085 ID=FC917085; Name=FC917085; organism=Citrus clementina; type=EST; length=916bp
AAATTCTTCACTTTGCAAACACACACTAAAAACGTTTTAGTGAGCAAACT
CAAAAGAAACAACACAAACCAAAATTCATTTTGTGAAAAAGAAAAAATTA
GTGGCATACAACGTCTCTAGAGACGCACAGCAATGGCGTGAAAACTGAAA
ACCGAAGCTTTTTATGAGAAGCGGAAGAGAATTAAGAGAAAAAGCAGAAG
AAGAAGGCAAAAATGGAATACTACTGTCTTGGAGCTCGAAATTTCGCAGC
AATGGCGGTATCTCCTTTCCCAACAGGGCGGACGCGAAGGAAAGCACTGA
GAGTGAGAACCAAACAGAGTGCTGTAGATTGTAATCATAGTTCCTATAAA
GTGACAGCTAGAGCTACTAGTAGTAATGCTGGTAGTGAGAGTTGCGTAGC
CGTCAAAGAAGAAGATTATATTAAGGCCGGTGGCTCTCAGCTTGTTTTCG
TACAAATGCAGCAAAACAAGTCAATGGATAAACAGTCTAAATTAGCCGAT
AAGCTACCGCCAATATCAATTGGTAATGGTATTTTGGATTTGGTGGTGAT
TGGTTGTGGCCCAGCTGGTCTTGCTTTGGCTGCAGAATCAGCGAAGTTGG
GATTAAATGTTGGACTTATTGGCCCGGATCTCCCTTTCACAAACAATTAT
GGTGTGTGGGAAGATGAATTTAGAGATCTTGGACTTGAAGGGTGTATCGA
ACATGTCTGGAGAGACACAGTTGTATATATTGATGAAGATGAACCCATCT
TGATTGGTCGTGCTTATGGACGAGTTAGTCGACATTTGCTTCATGAAGAA
TTATTAAGAAAGTGTGTCGAGTCAGGTGTTTCATATCTTAGCTCAAAAGT
GGAAAGCATTACGGAATCTACCAGTGGTCATCGTCTTGTACCTTGTGAAC
ATGATATGATTGTCCC
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