FC918242

Overview
NameFC918242
Unique NameFC918242
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length885
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC918242_ssr298 microsatellite FC918242_ssr298:298..315. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13826 contig Ccv1_Contig13826:27..908. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC918242 vs. ExPASy Swiss-Prot
Match: SCP42_ARATH (Serine carboxypeptidase-like 42 OS=Arabidopsis thaliana GN=SCPL42 PE=2 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 1.028e-73
Identity = 130/181 (71.82%), Postives = 146/181 (80.66%), Query Frame = 3
Query:  339 YVAAFPAEDLVVSLPGQPKVAFRQYAGYVDVDVKNGRSLFYYFVEAEVEPHEKPLTLWLNXXXXXXXXXXXAFTELGPFYPRGDGRGLRRNSMSWNKASNLLFVESPAGVGWSYSNTTSDYNCGDASTARDMHVFMMNWYEKFPEFKSRELFLTGESYAGHYIPQLADVLLHHNAHSKGFQ 881
            +   +P EDLVV LPGQP V F+QYAGYVDVDVK GRSLFYY+VEA  +P  KPLTLWLN           AFTELGPFYP GDGRGLR NSMSWNKAS+LLFVESPAGVGWSYSN +SDYN GD STA DM VF++ W+EKFP+ KSR+LFLTGESYAGHYIPQLAD +L +N+HS GF+
Sbjct:   23 FAKGYPEEDLVVRLPGQPTVGFKQYAGYVDVDVKAGRSLFYYYVEAVKQPDSKPLTLWLNGGPGCSSIGGGAFTELGPFYPTGDGRGLRVNSMSWNKASHLLFVESPAGVGWSYSNKSSDYNTGDKSTANDMLVFLLRWFEKFPKLKSRDLFLTGESYAGHYIPQLADAILSYNSHSSGFK 203          
BLAST of FC918242 vs. ExPASy Swiss-Prot
Match: SCP44_ARATH (Serine carboxypeptidase-like 44 OS=Arabidopsis thaliana GN=SCPL44 PE=2 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.754e-73
Identity = 133/202 (65.84%), Postives = 149/202 (73.76%), Query Frame = 3
Query:  258 GRWCFGGFLNISXXXXXXXXXSRSNVAYVAAFPAEDLVVSLPGQPKVAFRQYAGYVDVDVKNGRSLFYYFVEAEVEPHEKPLTLWLNXXXXXXXXXXXAFTELGPFYPRGDGRGLRRNSMSWNKASNLLFVESPAGVGWSYSNTTSDYNCGDASTARDMHVFMMNWYEKFPEFKSRELFLTGESYAGHYIPQLADVLLHHNA 863
            G+W    FL ++            N      FP +DLV  LPGQP+VAFRQ+AGYVD+DVK GRSLFYYFVEAE +PH KPLTLWLN           AFTELGPFYP GD RGLRRN  SWNKASNLLFV+SPAGVGWSYSNTTSDY  GD STA+DM VFM+ W EKFP+FK+R LFL GESYAGHY+PQLADV+L +NA
Sbjct:    4 GKW---RFLEVAVVVMVLQWSCDYNGNLAEGFPVQDLVTKLPGQPEVAFRQFAGYVDIDVKAGRSLFYYFVEAEKQPHSKPLTLWLNGGPGCSSIGGGAFTELGPFYPTGDARGLRRNPKSWNKASNLLFVDSPAGVGWSYSNTTSDYTTGDESTAKDMLVFMLRWLEKFPQFKTRNLFLAGESYAGHYVPQLADVILEYNA 202          
BLAST of FC918242 vs. ExPASy Swiss-Prot
Match: SCP43_ARATH (Serine carboxypeptidase-like 43 OS=Arabidopsis thaliana GN=SCPL43 PE=2 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 5.102e-73
Identity = 129/183 (70.49%), Postives = 144/183 (78.69%), Query Frame = 3
Query:  333 VAYVAAFPAEDLVVSLPGQPKVAFRQYAGYVDVDVKNGRSLFYYFVEAEVEPHEKPLTLWLNXXXXXXXXXXXAFTELGPFYPRGDGRGLRRNSMSWNKASNLLFVESPAGVGWSYSNTTSDYNCGDASTARDMHVFMMNWYEKFPEFKSRELFLTGESYAGHYIPQLADVLLHHNAHSKGFQ 881
            + +   +P EDLV  LPGQP V FRQ+AGYVDVD +NGRSLFYY+VEA  EP  KPLTLWLN           AFTELGPFYP GDGRGLR NSMSWNKASNLLFVESPAGVGWSYSN +SDYN GD ST  DM VF++ W+ KFPE KSR+LFLTGESYAGHYIPQLADV+L +N+ S GF+
Sbjct:   20 LVFAEGYPEEDLVARLPGQPNVGFRQFAGYVDVDSENGRSLFYYYVEAVKEPDTKPLTLWLNGGPGCSSVGGGAFTELGPFYPTGDGRGLRLNSMSWNKASNLLFVESPAGVGWSYSNRSSDYNTGDKSTVNDMLVFLLRWFNKFPELKSRDLFLTGESYAGHYIPQLADVILSYNSRSSGFK 202          
BLAST of FC918242 vs. ExPASy Swiss-Prot
Match: SCP41_ARATH (Serine carboxypeptidase-like 41 OS=Arabidopsis thaliana GN=SCPL41 PE=2 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 8.146e-71
Identity = 126/181 (69.61%), Postives = 141/181 (77.90%), Query Frame = 3
Query:  339 YVAAFPAEDLVVSLPGQPKVAFRQYAGYVDVDVKNGRSLFYYFVEAEVEPHEKPLTLWLNXXXXXXXXXXXAFTELGPFYPRGDGRGLRRNSMSWNKASNLLFVESPAGVGWSYSNTTSDYNCGDASTARDMHVFMMNWYEKFPEFKSRELFLTGESYAGHYIPQLADVLLHHNAHSKGFQ 881
            +   +P  DLVV LPGQPKV FRQYAGYVD+D+  GRSLFYYFVEAE  P  KPLTLWLN           AFTELGPFYP G GRGLR NSMSWNKASNLLFV+SPAGVGWSYSN +SDYN GD S A DM VF++ W++KFPE KS +LFLTGESYAGHYIPQLAD +L +N+ S GF+
Sbjct:   19 FARGYPETDLVVRLPGQPKVVFRQYAGYVDLDLNAGRSLFYYFVEAEKHPDTKPLTLWLNGGPGCSSVGGGAFTELGPFYPTGYGRGLRINSMSWNKASNLLFVDSPAGVGWSYSNRSSDYNAGDKSAASDMLVFLLRWFDKFPELKSHDLFLTGESYAGHYIPQLADAILSYNSRSSGFK 199          
BLAST of FC918242 vs. ExPASy Swiss-Prot
Match: SCP31_ARATH (Serine carboxypeptidase-like 31 OS=Arabidopsis thaliana GN=SCPL31 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.550e-48
Identity = 92/172 (53.49%), Postives = 117/172 (68.02%), Query Frame = 3
Query:  360 EDLVVSLPGQPKVAFRQYAGYVDVDVKNGRSLFYYFVEAEVEPHEKPLTLWLNXXXXXXXXXXXAFTELGPFYPRGDGRGLRRNSMSWNKASNLLFVESPAGVGWSYSNTTSDY-NCGDASTARDMHVFMMNWYEKFPEFKSRELFLTGESYAGHYIPQLADVLLHHNAHSK 872
            +DLV  LPGQP V+FR YAGYV VD  NGR++FY+F EA   P EKPL LWLN           A  E+GPF    +G GL  N  +WNK +N+LF+ESP GVG+SYSNT+SDY   GD  TARD + F+ NW+EKFPE K    ++ GESYAG Y+P+LA+V+  +N ++K
Sbjct:   48 QDLVTGLPGQPDVSFRHYAGYVPVDESNGRAMFYWFFEAMDLPKEKPLVLWLNGGPGCSSVGYGATQEIGPFLVDTNGNGLNFNPYAWNKEANMLFLESPVGVGFSYSNTSSDYQKLGDDFTARDAYTFLCNWFEKFPEHKENTFYIAGESYAGKYVPELAEVVYDNNNNNK 219          
BLAST of FC918242 vs. ExPASy Swiss-Prot
Match: SCP40_ARATH (Serine carboxypeptidase-like 40 OS=Arabidopsis thaliana GN=SCPL40 PE=2 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 4.349e-48
Identity = 93/169 (55.03%), Postives = 116/169 (68.64%), Query Frame = 3
Query:  363 DLVVSLPGQPKVAFRQYAGYVDVDVKNGRSLFYYFVEAEVEPHEKPLTLWLNXXXXXXXXXXXAFTELGPFYPRGDGRGLRRNSMSWNKASNLLFVESPAGVGWSYSNTTSDY-NCGDASTARDMHVFMMNWYEKFPEFKSRELFLTGESYAGHYIPQLA-DVLLHHNA 863
            DL+  LPGQP V+F QY GYV V+   GRS FYYFVEA       PL LWLN           A  ELGPF    DG+ L RN  +WN A+N+LF+ESPAGVG+SY+NTTSD    GD +TA D ++F++NW E+FPE+K R+L++ GESYAGHY+PQLA  +LLHH +
Sbjct:   80 DLIRRLPGQPPVSFDQYGGYVTVNESAGRSFFYYFVEASKSKDSSPLLLWLNGGPGCSSLAYGALQELGPFRVHSDGKTLFRNRYAWNNAANVLFLESPAGVGFSYTNTTSDLEKHGDRNTAADNYIFLVNWLERFPEYKGRDLYIAGESYAGHYVPQLAHTILLHHRS 248          
BLAST of FC918242 vs. ExPASy Swiss-Prot
Match: SCP39_ARATH (Serine carboxypeptidase-like 39 OS=Arabidopsis thaliana GN=SCPL39 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 3.117e-46
Identity = 90/167 (53.89%), Postives = 111/167 (66.47%), Query Frame = 3
Query:  363 DLVVSLPGQPKVAFRQYAGYVDVDVKNGRSLFYYFVEAEVEPHEKPLTLWLNXXXXXXXXXXXAFTELGPFYPRGDGRGLRRNSMSWNKASNLLFVESPAGVGWSYSNTTSDY-NCGDASTARDMHVFMMNWYEKFPEFKSRELFLTGESYAGHYIPQLADVLLHHN 860
            DL+ +LPGQP V+FRQY GYV V+   GRSL+YYFVEA       PL LWLN           AF ELGPF   GDG+ L  N  SWN  +N+LF+ESP G G+SY+NT SD  N GD   A D ++F++ W E+FPE+K RE ++ GESYAGHY+PQLA  +L HN
Sbjct:   78 DLIENLPGQPSVSFRQYGGYVTVNESAGRSLYYYFVEATKTKKSLPLVLWLNGGPGCSSLYG-AFQELGPFRIYGDGKTLYTNPYSWNNVANILFLESPVGTGFSYTNTESDLENPGDMKAAADKYIFLVKWLERFPEYKGREFYIAGESYAGHYVPQLAQTILVHN 243          
BLAST of FC918242 vs. ExPASy Swiss-Prot
Match: SCP32_ARATH (Serine carboxypeptidase-like 32 OS=Arabidopsis thaliana GN=SCPL32 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 4.071e-46
Identity = 86/175 (49.14%), Postives = 117/175 (66.86%), Query Frame = 3
Query:  363 DLVVSLPGQPKVAFRQYAGYVDVDVKNGRSLFYYFVEAEVEPHEKPLTLWLNXXXXXXXXXXXAFTELGPFYPRGDGRGLRRNSMSWNKASNLLFVESPAGVGWSYSNTTSDY-NCGDASTARDMHVFMMNWYEKFPEFKSRELFLTGESYAGHYIPQLADVLLHHNAHSKGFQV 884
            DLV + PGQPKV+FR YAGYV V++ +GR+LFY+F EA   P+ KPL LWLN           A  E+GPF     G  L+ N  +WNK +N+LF+ESPAGVG+SYSNT+SDY   GD  TARD + F+  W+ +FP +K ++ F+ GESYAG Y+P+LA+V+   N  ++   +
Sbjct:   30 DLVTNFPGQPKVSFRHYAGYVTVNIISGRALFYWFFEAMTHPNVKPLVLWLNGGPGCSSVGYGATQEIGPFLVDNKGNSLKFNPYAWNKEANILFLESPAGVGFSYSNTSSDYRKLGDDFTARDSYTFLQKWFLRFPAYKEKDFFIAGESYAGKYVPELAEVIYDKNKDNENLSL 204          
BLAST of FC918242 vs. ExPASy Swiss-Prot
Match: SCP34_ARATH (Serine carboxypeptidase-like 34 OS=Arabidopsis thaliana GN=SCPL34 PE=2 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 1.184e-45
Identity = 88/175 (50.29%), Postives = 119/175 (68.00%), Query Frame = 3
Query:  342 VAAFPAEDLVVSLPGQPKVAFRQYAGYVDVDVKNGRSLFYYFVEAEVEPHEKPLTLWLNXXXXXXXXXXXAFTELGPFYPRGDGR-GLRRNSMSWNKASNLLFVESPAGVGWSYSNTTSDY-NCGDASTARDMHVFMMNWYEKFPEFKSRELFLTGESYAGHYIPQLADVLLHHN 860
            V A    D V  LPGQP V FRQYAGYV V+  +GR+LFY+F EA   P +KP+ LWLN           A  ELGPF+P+   +  L+ N  SWNKA+NLLF+ESP GVG+SY+NT+ D    GD  TARD + F++NW+++FP++KS + ++ GESYAGHY+PQL++++   N
Sbjct:   43 VLAAQRADRVKELPGQPPVKFRQYAGYVTVNETHGRALFYWFFEATQNPSKKPVLLWLNGGPGCSSIGFGAAEELGPFFPQNSSQPKLKLNPYSWNKAANLLFLESPVGVGFSYTNTSRDIKQLGDTVTARDSYNFLVNWFKRFPQYKSHDFYIAGESYAGHYVPQLSELIYKEN 217          
BLAST of FC918242 vs. ExPASy Swiss-Prot
Match: SCP30_ARATH (Putative serine carboxypeptidase-like 30 OS=Arabidopsis thaliana GN=SCPL30 PE=2 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 1.003e-44
Identity = 87/167 (52.10%), Postives = 112/167 (67.07%), Query Frame = 3
Query:  363 DLVVSLPGQPKVAFRQYAGYVDVDVKNGRSLFYYFVEAEVEPHEKPLTLWLNXXXXXXXXXXXAFTELGPFYPRGDGRGLRRNSMSWNKASNLLFVESPAGVGWSYSNTTSDY-NCGDASTARDMHVFMMNWYEKFPEFKSRELFLTGESYAGHYIPQLADVLLHHN 860
            DLV +LPGQP V+F+ YAGYV VD  NGR+LFY+F EA   P EKPL LWLN           A  E+GPF    + +GL  N  +WNK  N+LF+ESP GVG+SYSNT+SDY N  D    +D + F+ NW+EKFPE K  E ++ GESYAG Y+P+LA+++  +N
Sbjct:   43 DLVTNLPGQPDVSFKHYAGYVPVDKSNGRALFYWFFEAMDLPKEKPLVLWLNGGPGCSSVGYGATQEIGPFLADTNEKGLIFNPYAWNKEVNMLFLESPVGVGFSYSNTSSDYLNLDDHFAKKDAYTFLCNWFEKFPEHKGNEFYIAGESYAGIYVPELAELVYDNN 209          
The following BLAST results are available for this feature:
BLAST of FC918242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
SCP42_ARATH1.028e-7371.82Serine carboxypeptidase-like 42 OS=Arabidopsis tha... [more]
SCP44_ARATH1.754e-7365.84Serine carboxypeptidase-like 44 OS=Arabidopsis tha... [more]
SCP43_ARATH5.102e-7370.49Serine carboxypeptidase-like 43 OS=Arabidopsis tha... [more]
SCP41_ARATH8.146e-7169.61Serine carboxypeptidase-like 41 OS=Arabidopsis tha... [more]
SCP31_ARATH2.550e-4853.49Serine carboxypeptidase-like 31 OS=Arabidopsis tha... [more]
SCP40_ARATH4.349e-4855.03Serine carboxypeptidase-like 40 OS=Arabidopsis tha... [more]
SCP39_ARATH3.117e-4653.89Serine carboxypeptidase-like 39 OS=Arabidopsis tha... [more]
SCP32_ARATH4.071e-4649.14Serine carboxypeptidase-like 32 OS=Arabidopsis tha... [more]
SCP34_ARATH1.184e-4550.29Serine carboxypeptidase-like 34 OS=Arabidopsis tha... [more]
SCP30_ARATH1.003e-4452.10Putative serine carboxypeptidase-like 30 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA62BH08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA62BH08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918242 ID=FC918242; Name=FC918242; organism=Citrus clementina; type=EST; length=885bp
ATTTTCAAAGATGCTTTGCGTTTATTTAGTTTAATTATCCATTAGTATCT
TTTTGTTAAAGTAGACCCAGAATTCACGTGACTGGTGTAACAGAATTTGT
TTGATAAAGATATACAAGGGAATTATTATCATCCATGATTTTTAATACAT
ATAACTCTTTATAGGTTGCTTTTGGTTTCATTATCATTATATATTTGAAC
GTGCAATTCCATCTAAATGAATGTACATGTGAGCTTCCCGTGACAAATCT
TGAGATGGGTAGGTGGTGTTTTGGTGGGTTCTTGAATATTTCTTTAGTGT
TGTTGTTGTTGTTGTTGGTGAGTAGAAGTAATGTTGCATACGTGGCGGCG
TTCCCGGCGGAGGATCTGGTGGTGAGCTTGCCGGGGCAACCGAAGGTTGC
CTTCAGGCAATATGCTGGCTATGTTGATGTTGATGTCAAAAATGGCAGAA
GCTTGTTTTACTACTTTGTTGAAGCTGAAGTCGAACCGCATGAGAAACCT
CTCACTCTTTGGCTTAATGGAGGCCCAGGTTGCTCTTCTGTTGGAGGAGG
TGCTTTCACAGAATTGGGTCCATTTTATCCAAGAGGTGATGGCCGGGGCC
TTAGAAGGAATTCGATGTCATGGAATAAAGCATCAAATCTTCTCTTTGTT
GAGTCTCCTGCTGGAGTTGGATGGTCATACTCAAATACAACTTCTGACTA
TAATTGCGGGGATGCCTCCACTGCCAGGGATATGCATGTATTTATGATGA
ACTGGTATGAAAAATTCCCAGAATTCAAGTCAAGAGAATTGTTTCTTACA
GGGGAAAGCTATGCAGGTCATTACATACCGCAGTTGGCTGACGTTCTGCT
GCACCATAATGCACATTCAAAGGGGTTTCAAGTTT
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