FC918249

Overview
NameFC918249
Unique NameFC918249
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length963
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC918249_ssr490 microsatellite FC918249_ssr490:490..519. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig2809 contig Ccv1_Contig2809:1..963. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC918249 vs. ExPASy Swiss-Prot
Match: U497A_ARATH (UPF0497 membrane protein At2g36330 OS=Arabidopsis thaliana GN=At2g36330 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.386e-21
Identity = 43/77 (55.84%), Postives = 61/77 (79.22%), Query Frame = 1
Query:  640 ILKRAKRDNTIKKSLLGFRVCGFVFSLVAFSVLAADKDRGWARDSFYRYKEFSYCLAVNVIVFVYSGFQSFDLAYRL 870
            IL+R++R+  +K S LGFR+   V +L++FS++AADK +GW+ DSF RYKE+ +CL+VNV+ FVYS FQ+ DLAY L
Sbjct:  122 ILRRSRREEVVKFSALGFRLSEVVLALISFSIMAADKTKGWSGDSFDRYKEYRFCLSVNVVAFVYSSFQACDLAYHL 198          

HSP 2 Score: 25.7942 bits (55), Expect = 2.386e-21
Identity = 10/16 (62.50%), Postives = 14/16 (87.50%), Query Frame = 3
Query:  915 DFSLDQILTYLLLSAS 962
            +F +DQ+L YLL+SAS
Sbjct:  214 EFIIDQVLAYLLMSAS 229          
BLAST of FC918249 vs. ExPASy Swiss-Prot
Match: U49A7_ARATH (UPF0497 membrane protein At5g40300 OS=Arabidopsis thaliana GN=At5g40300 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.966e-20
Identity = 51/107 (47.66%), Postives = 69/107 (64.49%), Query Frame = 1
Query:  601 IGSARKILRTNLTILKRAKRDNT----IKKSLLGFRVCGFVFSLVAFSVLAADKDRGWARDSFYRYKEFSYCLAVNVIVFVYSGFQSFDLAYRLTAGHRKHGRILRY 909
            +  +R+ LR + +      R++     I+K+LLGFRV  FV  LV+FSV+ +D+D+GWA DSFY YKEF +CLA NVI FVYSGF   DL Y L+   R+    LR+
Sbjct:   92 VSESRRQLRPSFSSSSSTPRESKWASLIRKALLGFRVIAFVSCLVSFSVMVSDRDKGWAHDSFYNYKEFRFCLAANVIGFVYSGFMICDLVYLLSTSIRRSRHNLRH 198          
BLAST of FC918249 vs. ExPASy Swiss-Prot
Match: U49D7_ARATH (UPF0497 membrane protein At5g62820 OS=Arabidopsis thaliana GN=At5g62820 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.214e-18
Identity = 42/111 (37.84%), Postives = 65/111 (58.56%), Query Frame = 1
Query:  529 KQPPPVKPHISSAAAPDTESAPSNIGSARKILRTNLTILKRAKRDNTIKKSLLGFRVCGFVFSLVAFSVLAADKDRGWARDSFYRYKEFSYCLAVNVIVFVYSGFQSFDLA 861
            K P  +  H S       ++     G+      +  T + RA+ D+ +  + LGFR+   +  +++FS++AADK +GW+ DS+ RYKE+ YCLAVNVI FVYS F++ D A
Sbjct:   99 KSPSSMVVHNSWVREDGGQTTTRKAGAPINGEESTRTTVNRARGDDLVSLTALGFRITEVILCVISFSIMAADKTQGWSGDSYDRYKEYRYCLAVNVIAFVYSAFEACDAA 209          

HSP 2 Score: 26.9498 bits (58), Expect = 2.214e-18
Identity = 11/15 (73.33%), Postives = 14/15 (93.33%), Query Frame = 3
Query:  918 FSLDQILTYLLLSAS 962
            FS+DQ+L YLL+SAS
Sbjct:  229 FSMDQLLAYLLMSAS 243          
BLAST of FC918249 vs. ExPASy Swiss-Prot
Match: U497G_MAIZE (UPF0497 membrane protein 16 OS=Zea mays PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.649e-14
Identity = 44/109 (40.37%), Postives = 59/109 (54.13%), Query Frame = 1
Query:  535 PPPVKPHISSAAAPDTESAPSNIGSARKILRTNLTILKRAKRDNTIKKSLLGFRVCGFVFSLVAFSVLAADKDRGWARDSFYRYKEFSYCLAVNVIVFVYSGFQSFDLA 861
            PPP  P  S A AP      + + SA +++     IL R +R   ++++ L  R       L A +VLAAD  RGWARDS+  Y +F Y  AVNV+ F+YS FQ   LA
Sbjct:  114 PPPPPPAASPAPAPRAPPPHAQVRSADRVVPA---ILSRKRRAAVMQRAALLARAAAAGXXLAALTVLAADTRRGWARDSYSNYAQFRYSEAVNVVGFLYSVFQFVALA 219          

HSP 2 Score: 27.335 bits (59), Expect = 1.649e-14
Identity = 10/16 (62.50%), Postives = 15/16 (93.75%), Query Frame = 3
Query:  915 DFSLDQILTYLLLSAS 962
            DF++DQ+L YLL+S+S
Sbjct:  238 DFTMDQVLAYLLISSS 253          
BLAST of FC918249 vs. ExPASy Swiss-Prot
Match: U497F_MAIZE (UPF0497 membrane protein 15 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.813e-13
Identity = 42/108 (38.89%), Postives = 58/108 (53.70%), Query Frame = 1
Query:  538 PPVKPHISSAAAPDTESAPSNIGSARKILRTNLTILKRAKRDNTIKKSLLGFRVCGFVFSLVAFSVLAADKDRGWARDSFYRYKEFSYCLAVNVIVFVYSGFQSFDLA 861
            PP  P  S A AP      + + SA +++     IL R +R   ++++ L  R       L A +VLA+D  RGWARDS+  Y +F Y  AVNV+ F+YS FQ   LA
Sbjct:  111 PPPPPAASPAPAPRAPPPHAQVRSADRVVPA---ILSRKRRAAVMQRAALLARAAAAGLCLAALAVLASDTRRGWARDSYSNYAQFRYSEAVNVVGFLYSVFQFVALA 215          

HSP 2 Score: 26.1794 bits (56), Expect = 3.813e-13
Identity = 9/16 (56.25%), Postives = 15/16 (93.75%), Query Frame = 3
Query:  915 DFSLDQILTYLLLSAS 962
            DF++DQ++ YLL+S+S
Sbjct:  234 DFTMDQVVAYLLISSS 249          
BLAST of FC918249 vs. ExPASy Swiss-Prot
Match: U4975_SORBI (UPF0497 membrane protein Sb04g002820 OS=Sorghum bicolor GN=Sb04g002820 PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 6.669e-12
Identity = 44/118 (37.29%), Postives = 57/118 (48.31%), Query Frame = 1
Query:  535 PPPVKPHIS---------SAAAPDTESAPSNIGSA-----RKILRTNLTILKRAKRDNTIKKSLLGFRVCGFVFSLVAFSVLAADKDRGWARDSFYRYKEFSYCLAVNVIVFVYSGFQ 846
            PPPV P            SA AP     P+   S+     R   +    IL R +R   ++++ L  R       L A +VLAAD  +GWARDS+  Y +F Y  AVNVI F+YS FQ
Sbjct:  243 PPPVPPSPPAPAQAPVPPSATAPAPAPVPAPRASSPHVQFRSADQVVPNILSRKRRAAAMQRTALLARGAAAGLCLAALAVLAADTRKGWARDSYSNYTQFRYSEAVNVIGFIYSVFQ 360          

HSP 2 Score: 29.261 bits (64), Expect = 6.669e-12
Identity = 11/16 (68.75%), Postives = 16/16 (100.00%), Query Frame = 3
Query:  915 DFSLDQILTYLLLSAS 962
            DF++DQ+LTYLL+S+S
Sbjct:  384 DFTMDQVLTYLLISSS 399          
The following BLAST results are available for this feature:
BLAST of FC918249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
U497A_ARATH2.386e-2155.84UPF0497 membrane protein At2g36330 OS=Arabidopsis ... [more]
U49A7_ARATH1.966e-2047.66UPF0497 membrane protein At5g40300 OS=Arabidopsis ... [more]
U49D7_ARATH2.214e-1837.84UPF0497 membrane protein At5g62820 OS=Arabidopsis ... [more]
U497G_MAIZE1.649e-1440.37UPF0497 membrane protein 16 OS=Zea mays PE=2 SV=2[more]
U497F_MAIZE3.813e-1338.89UPF0497 membrane protein 15 OS=Zea mays PE=2 SV=1[more]
U4975_SORBI6.669e-1237.29UPF0497 membrane protein Sb04g002820 OS=Sorghum bi... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA62BH09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA62BH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918249 ID=FC918249; Name=FC918249; organism=Citrus clementina; type=EST; length=963bp
CGAGAACAGTTAGTAACTGTAACACCCACTGTCTCAGTCCCTTTCATTTC
CAATTTCCAAAATTCCAAGTTCCAACGTCAGCACCAAACCAGTTAACCAA
CAGTCTCATTCATTGGTCACTCCCATCTCCAAAGTCCAAACTACCGAACA
ACGACGATGGAAAAACACGAACAAGAACAAGAAAAGGACCACAACACGGA
CCGGGAGCCGGCTCCGAACCCACCATCCAAGATGCAATCTCCTCCACGGG
AACCAGACCTCGAACCCATAACACTATCCCAAAACCCACCACCGGCAACG
CTTCCCCCACGCCGCCAACCGGAGCTCCAACCCATTAGATTGAGCGCGAG
CCCATCACCGGAAACGCTCTCTCCACTATCCGAACCAGAGTTGGAACAGC
ACACAACCCACAACCCACCGCTGGGACAAGAACATCTCCACCACTACAAC
TCCACGCCCGAATCACCGGCGTTGGATTTCTCACATCACGAAGAAGAAGA
AGAAGAAGAAGAAGAAGAAGAGAAACACAAACAACCACCTCCAGTTAAGC
CTCATATATCTTCGGCTGCAGCGCCGGATACAGAAAGTGCTCCTAGTAAT
ATCGGGAGTGCAAGGAAAATTTTGAGGACCAACTTGACCATCCTGAAGAG
AGCCAAGAGGGACAACACGATCAAAAAGTCACTGCTCGGGTTTAGGGTTT
GTGGGTTTGTGTTTAGCTTGGTTGCTTTCTCAGTTTTGGCCGCTGATAAA
GACAGGGGATGGGCTCGCGATTCTTTCTATCGTTACAAAGAGTTCAGCTA
CTGTTTGGCAGTGAATGTGATCGTTTTTGTGTATTCTGGGTTTCAATCAT
TTGATTTAGCCTATCGATTGACTGCCGGACATCGCAAACACGGCAGAATT
CTCCGGTATACTTGGATTTTTCATTGGACCAGATATTGACTTATCTTCTT
CTATCTGCATCGT
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