FC918256

Overview
NameFC918256
Unique NameFC918256
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length800
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC918256_ssr109 microsatellite FC918256_ssr109:109..120. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig8249 contig Ccv1_Contig8249:1..799. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC918256 vs. ExPASy Swiss-Prot
Match: QRT3_ARATH (Polygalacturonase QRT3 OS=Arabidopsis thaliana GN=QRT3 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.978e-25
Identity = 77/212 (36.32%), Postives = 108/212 (50.94%), Query Frame = 1 
Query:  166 MPARLLAKLQVAQNAPCPSASSIKNNGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFP-PXXXXXXXXXXTLRASDTFPSDRHLIELWAPNSQKLKRTDAIKIDRNYVFNDVKDQTARTYY--EDITFRDVLFDSGFRGGGIFVIDSARIRIKQLLLFTFHNTRNFGAKRPRNLHIK 792
            + A L+ +   A  +P P+        RV+  I YGADPTG  +S+DAIL+A+ +AF+  +   L+ G+ DLGG  ID QGG+Y IS+P+RFP            TLRAS+ FP DR+LIEL                         KD++++  Y  E IT RD+L D  +RGG I VI+S R  I    +  F +T     K     +I+
Sbjct:   47 LKASLVRRNLPALVSPPPTPPQAVPGPRVYQVISYGADPTGKLDSTDAILKAMEEAFDGPNHGVLMQGINDLGGARIDLQGGSYLISRPLRFPSAGAGNLLISGGTLRASNDFPVDRYLIEL-------------------------KDESSKLQYIFEYITLRDLLIDCNYRGGAIAVINSLRTSIDNCYITRFGDTNGILVKSGHETYIR 233
The following BLAST results are available for this feature:
BLAST of FC918256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
QRT3_ARATH1.978e-2536.32Polygalacturonase QRT3 OS=Arabidopsis thaliana GN=... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA96BA08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA96BA08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918256 ID=FC918256; Name=FC918256; organism=Citrus clementina; type=EST; length=800bp
CTCCTTTTCTCTGTCTCTCTTTCTCAACTTTTACACCCATTGATTATCTT
ATAATAAGGTTACTACAGTACAAGAATAATGAAGCATTTGTTAGCTTTGT
GCTTCACTTTATTATTATTATGTCCATTATTGCTGCAGGAAACAACTTCC
ATCAGTGAAGAAAATATGCCAGCCCGGTTACTAGCAAAGCTTCAAGTTGC
CCAAAATGCGCCATGTCCCTCAGCTTCTAGCATAAAAAATAACGGGAGAG
TGTTTTACCCAATTGGGTATGGAGCAGACCCAACGGGGGCAAATGAAAGC
AGTGACGCCATATTGCAAGCTCTAAACGACGCGTTTAACGTGCAAAGTGG
GCTTGAATTATTGCCTGGTGTCAAGGATTTGGGTGGTGTTATTATTGATT
TTCAAGGCGGAAACTATAAAATCAGCAAACCCATCAGGTTCCCTCCTGGC
GTTGGCAATGTCGTGGTACAAGGAGGAACACTGCGTGCATCAGATACATT
TCCAAGTGATCGACATCTCATTGAATTGTGGGCACCGAATTCCCAGAAAC
TGAAGCGAACAGACGCCATCAAAATTGATCGTAATTATGTCTTCAACGAC
GTGAAAGACCAGACCGCTAGAACCTACTATGAAGACATCACATTTCGCGA
CGTCCTCTTCGATTCAGGCTTCCGAGGAGGAGGGATTTTTGTGATTGATT
CAGCTCGGATTCGGATAAAACAATTGCTTCTTTTTACATTTCACAACACA
AGGAATTTTGGTGCAAAGAGGCCACGAAACCTTCATATCAAGCTGCTTCT
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