FC918257

Overview
NameFC918257
Unique NameFC918257
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length944
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC918257_ssr474 microsatellite FC918257_ssr474:474..503. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig2809 contig Ccv1_Contig2809:17..960. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC918257 vs. ExPASy Swiss-Prot
Match: U49A7_ARATH (UPF0497 membrane protein At5g40300 OS=Arabidopsis thaliana GN=At5g40300 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.094e-27
Identity = 62/124 (50.00%), Postives = 84/124 (67.74%), Query Frame = 3
Query:  585 IGSARKILRTNLTILKRAKRDNT----IKKSLLGFRVCGFVFSLVAFSVLAADKDRGWARDSFYRYKEFSYCLAVNVIVFVYSGFQSFDLAYRLTAGHRKPRQILRYYLDFSLEQILTYLLLSA 944
            +  +R+ LR + +      R++     I+K+LLGFRV  FV  LV+FSV+ +D+D+GWA DSFY YKEF +CLA NVI FVYSGF   DL Y L+   R+ R  LR++L+F L+Q+L YLL SA
Sbjct:   92 VSESRRQLRPSFSSSSSTPRESKWASLIRKALLGFRVIAFVSCLVSFSVMVSDRDKGWAHDSFYNYKEFRFCLAANVIGFVYSGFMICDLVYLLSTSIRRSRHNLRHFLEFGLDQMLAYLLASA 215          
BLAST of FC918257 vs. ExPASy Swiss-Prot
Match: U497A_ARATH (UPF0497 membrane protein At2g36330 OS=Arabidopsis thaliana GN=At2g36330 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.830e-24
Identity = 53/107 (49.53%), Postives = 76/107 (71.03%), Query Frame = 3
Query:  624 ILKRAKRDNTIKKSLLGFRVCGFVFSLVAFSVLAADKDRGWARDSFYRYKEFSYCLAVNVIVFVYSGFQSFDLAYRLTAGHRKPRQILRYYLDFSLEQILTYLLLSA 944
            IL+R++R+  +K S LGFR+   V +L++FS++AADK +GW+ DSF RYKE+ +CL+VNV+ FVYS FQ+ DLAY L          LR   +F ++Q+L YLL+SA
Sbjct:  122 ILRRSRREEVVKFSALGFRLSEVVLALISFSIMAADKTKGWSGDSFDRYKEYRFCLSVNVVAFVYSSFQACDLAYHLVKEKHLISHHLRPLFEFIIDQVLAYLLMSA 228          
BLAST of FC918257 vs. ExPASy Swiss-Prot
Match: U49D7_ARATH (UPF0497 membrane protein At5g62820 OS=Arabidopsis thaliana GN=At5g62820 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.580e-19
Identity = 51/144 (35.42%), Postives = 79/144 (54.86%), Query Frame = 3
Query:  513 KQPPPVKPHISSAAAPDTESAPSNIGSARKILRTNLTILKRAKRDNTIKKSLLGFRVCGFVFSLVAFSVLAADKDRGWARDSFYRYKEFSYCLAVNVIVFVYSGFQSFDLAYRLTAGHRKPRQILRYYLDFSLEQILTYLLLSA 944
            K P  +  H S       ++     G+      +  T + RA+ D+ +  + LGFR+   +  +++FS++AADK +GW+ DS+ RYKE+ YCLAVNVI FVYS F++ D A  +                FS++Q+L YLL+SA
Sbjct:   99 KSPSSMVVHNSWVREDGGQTTTRKAGAPINGEESTRTTVNRARGDDLVSLTALGFRITEVILCVISFSIMAADKTQGWSGDSYDRYKEYRYCLAVNVIAFVYSAFEACDAACYIAKESYMINCGFHDLFVFSMDQLLAYLLMSA 242          
BLAST of FC918257 vs. ExPASy Swiss-Prot
Match: U497G_MAIZE (UPF0497 membrane protein 16 OS=Zea mays PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.836e-16
Identity = 53/142 (37.32%), Postives = 75/142 (52.82%), Query Frame = 3
Query:  519 PPPVKPHISSAAAPDTESAPSNIGSARKILRTNLTILKRAKRDNTIKKSLLGFRVCGFVFSLVAFSVLAADKDRGWARDSFYRYKEFSYCLAVNVIVFVYSGFQSFDLAYRLTAGHRKPRQILRYYLDFSLEQILTYLLLSA 944
            PPP  P  S A AP      + + SA +++     IL R +R   ++++ L  R       L A +VLAAD  RGWARDS+  Y +F Y  AVNV+ F+YS FQ   LA  +           R   DF+++Q+L YLL+S+
Sbjct:  114 PPPPPPAASPAPAPRAPPPHAQVRSADRVVPA---ILSRKRRAAVMQRAALLARAAAAGXXLAALTVLAADTRRGWARDSYSNYAQFRYSEAVNVVGFLYSVFQFVALAELMRRNTHLIPHPKRGLFDFTMDQVLAYLLISS 252          
BLAST of FC918257 vs. ExPASy Swiss-Prot
Match: U497F_MAIZE (UPF0497 membrane protein 15 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.349e-15
Identity = 50/141 (35.46%), Postives = 74/141 (52.48%), Query Frame = 3
Query:  522 PPVKPHISSAAAPDTESAPSNIGSARKILRTNLTILKRAKRDNTIKKSLLGFRVCGFVFSLVAFSVLAADKDRGWARDSFYRYKEFSYCLAVNVIVFVYSGFQSFDLAYRLTAGHRKPRQILRYYLDFSLEQILTYLLLSA 944
            PP  P  S A AP      + + SA +++     IL R +R   ++++ L  R       L A +VLA+D  RGWARDS+  Y +F Y  AVNV+ F+YS FQ   LA  +           R   DF+++Q++ YLL+S+
Sbjct:  111 PPPPPAASPAPAPRAPPPHAQVRSADRVVPA---ILSRKRRAAVMQRAALLARAAAAGLCLAALAVLASDTRRGWARDSYSNYAQFRYSEAVNVVGFLYSVFQFVALAELMRRNKHLIPHPKRDLFDFTMDQVVAYLLISS 248          
BLAST of FC918257 vs. ExPASy Swiss-Prot
Match: U4975_SORBI (UPF0497 membrane protein Sb04g002820 OS=Sorghum bicolor GN=Sb04g002820 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.317e-13
Identity = 55/156 (35.26%), Postives = 75/156 (48.08%), Query Frame = 3
Query:  519 PPPVKPHIS---------SAAAPDTESAPSNIGSA-----RKILRTNLTILKRAKRDNTIKKSLLGFRVCGFVFSLVAFSVLAADKDRGWARDSFYRYKEFSYCLAVNVIVFVYSGFQSFDLAYRLTAGHRKPRQILRYYLDFSLEQILTYLLLSA 944
            PPPV P            SA AP     P+   S+     R   +    IL R +R   ++++ L  R       L A +VLAAD  +GWARDS+  Y +F Y  AVNVI F+YS FQ   L   +           R   DF+++Q+LTYLL+S+
Sbjct:  243 PPPVPPSPPAPAQAPVPPSATAPAPAPVPAPRASSPHVQFRSADQVVPNILSRKRRAAAMQRTALLARGAAAGLCLAALAVLAADTRKGWARDSYSNYTQFRYSEAVNVIGFIYSVFQFVALVELMRRNKHLIPHPKRDLFDFTMDQVLTYLLISS 398          
BLAST of FC918257 vs. ExPASy Swiss-Prot
Match: U497H_MAIZE (UPF0497 membrane protein 17 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.902e-12
Identity = 40/96 (41.67%), Postives = 56/96 (58.33%), Query Frame = 3
Query:  657 KKSLLGFRVCGFVFSLVAFSVLAADKDRGWARDSFYRYKEFSYCLAVNVIVFVYSGFQSFDLAYRLTAGHRKPRQILRYYLDFSLEQILTYLLLSA 944
            ++ LL  R+   V SL AFSV+A+ +  GWA D + R+ ++ Y +AVNVIVF YS  QS      L +     R +  YY    L+Q+L YLL+SA
Sbjct:  221 RELLLALRLATAVLSLAAFSVIASARTSGWAGDYYARHLQYRYAVAVNVIVFAYSVAQSLGKIRHLVSPRFTFRTMSSYYCSLFLDQVLAYLLMSA 316          
BLAST of FC918257 vs. ExPASy Swiss-Prot
Match: U497R_ORYSJ (UPF0497 membrane protein Os02g0134500 OS=Oryza sativa subsp. japonica GN=Os02g0134500 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.485e-12
Identity = 55/151 (36.42%), Postives = 77/151 (50.99%), Query Frame = 3
Query:  519 PPPVKPHIS-----SAAAPDTESAPSNIGSARKILRTNLT---ILKRAKRDNTIKKSLLGFRVCGFVFSLVAFSVLAADKDRGWARDSFYRYKEFSYCLAVNVIVFVYSGFQSFDLAYRLTAG-HRKPRQILRYYLDFSLEQILTYLLLSA 944
            PPP  P         A AP    AP+    AR +   +     IL R +    ++++ L  RV   +  L A +VLAAD  +G+A DS+  Y +  Y  AVNVI FVYS  Q F LA  +    H  PR+   Y+ DF ++Q+L YLL+S+
Sbjct:  105 PPPPAPAAPVLVPPPAPAPRPAPAPAPRVPARAVEHDHRVVPDILLRKRPTAVLQRTALVARVAAALLCLAALAVLAADSRKGFALDSYSNYSQLRYSEAVNVIGFVYSVLQFFVLADLMRRNKHLNPRRKGDYF-DFFMDQVLAYLLISS 254          
BLAST of FC918257 vs. ExPASy Swiss-Prot
Match: U4974_SORBI (UPF0497 membrane protein Sb03g029220 OS=Sorghum bicolor GN=Sb03g029220 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.588e-11
Identity = 47/146 (32.19%), Postives = 74/146 (50.68%), Query Frame = 3
Query:  507 KHKQPPPVKPHISSAAAPDTESAPSNIGSARKILRTNLTILKRAKRDNTIKKSLLGFRVCGFVFSLVAFSVLAADKDRGWARDSFYRYKEFSYCLAVNVIVFVYSGFQSFDLAYRLTAGHRKPRQILRYYLDFSLEQILTYLLLSA 944
            +H+     + H ++AA  +  S P ++ +A       + + +R +   T+       R+   V SL AFSV+A+ +  GWA D +  + ++ Y +AVNVIV  YS  QSF    RL +     R +  YY    L+Q L YLL+SA
Sbjct:  277 QHQHQQRQEQHAAAAAVENGGSVPPDVAAA-------VAVGERRELSVTL-------RLATAVLSLAAFSVIASARTSGWAGDYYAHHLQYRYAVAVNVIVCAYSIAQSFGEIRRLISPRFIFRSMSSYYCSLFLDQALAYLLMSA 408          
The following BLAST results are available for this feature:
BLAST of FC918257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
U49A7_ARATH2.094e-2750.00UPF0497 membrane protein At5g40300 OS=Arabidopsis ... [more]
U497A_ARATH2.830e-2449.53UPF0497 membrane protein At2g36330 OS=Arabidopsis ... [more]
U49D7_ARATH3.580e-1935.42UPF0497 membrane protein At5g62820 OS=Arabidopsis ... [more]
U497G_MAIZE2.836e-1637.32UPF0497 membrane protein 16 OS=Zea mays PE=2 SV=2[more]
U497F_MAIZE5.349e-1535.46UPF0497 membrane protein 15 OS=Zea mays PE=2 SV=1[more]
U4975_SORBI1.317e-1335.26UPF0497 membrane protein Sb04g002820 OS=Sorghum bi... [more]
U497H_MAIZE1.902e-1241.67UPF0497 membrane protein 17 OS=Zea mays PE=2 SV=1[more]
U497R_ORYSJ2.485e-1236.42UPF0497 membrane protein Os02g0134500 OS=Oryza sat... [more]
U4974_SORBI3.588e-1132.19UPF0497 membrane protein Sb03g029220 OS=Sorghum bi... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA50AA09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA50AA09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918257 ID=FC918257; Name=FC918257; organism=Citrus clementina; type=EST; length=944bp
CTGTAACGCCCACTGTCTCAGTCCCTTTCATTTCCAATTTCCAAAATTCC
AAGTTCCAACGTCAGCACCAAACCAGTTAACCAACAGTCTCATTCATTGG
TCACTCCCATCTCCAAAGTCCAAACTACCGAACAACGACGATGGAAAAAC
ACGAACAAGAACAAGAAAAGGACCACAACACGGACCGGGAGCCGGCTCCG
AACCCACCATCCAAGATGCAATCTCCTCCACGGGAACCAGACCTCGAACC
CATAACACTATCCCAAAACCCACCACCGGCAACGCTTCCCCCACGCCGCC
AACCGGAGCTCCAACCCATTAGATTGAGCGCGAGCCCATCACCGGAAACG
CTCTCTCCACTATCCGAACCAGAGTTGGAACAGCACACAACCCACAACCC
ACCGCTGGGACAAGAACATCTCCACCACTACAACTCCACGCCCGAATCAC
CGGCGTTGGATTTCTCACATCACGAAGAAGAAGAAGAAGAAGAAGAAGAA
GAAGAGAAACACAAACAACCACCTCCAGTTAAGCCTCATATATCTTCGGC
TGCAGCGCCGGATACAGAAAGTGCTCCTAGTAATATCGGGAGTGCAAGGA
AAATTTTGAGGACCAACTTGACCATCCTGAAGAGAGCCAAGAGGGACAAC
ACGATCAAAAAGTCACTGCTCGGGTTTAGGGTTTGTGGGTTTGTGTTTAG
CTTGGTTGCTTTCTCAGTTTTGGCCGCTGATAAAGACAGGGGATGGGCTC
GCGATTCTTTCTATCGTTACAAAGAGTTCAGCTACTGTTTGGCAGTGAAT
GTGATCGTTTTTGTGTATTCTGGGTTTCAATCATTTGATTTAGCCTATCG
ATTGACTGCCGGACATCGCAAACCACGGCAGATTCTCCGGTATTACTTGG
ATTTTTCATTGGAACAGATATTGACTTATCTTCTTCTATCTGCA
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