FC918258

Overview
NameFC918258
Unique NameFC918258
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length910
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC918258_ssr885 microsatellite FC918258_ssr885:885..899. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12193 contig Ccv1_Contig12193:213..1122. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC918258 vs. ExPASy Swiss-Prot
Match: HSFB4_ARATH (Heat stress transcription factor B-4 OS=Arabidopsis thaliana GN=HSFB4 PE=2 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 6.765e-76
Identity = 160/273 (58.61%), Postives = 177/273 (64.84%), Query Frame = 1
Query:   85 MALMLDNCEG---------ILLSLDSH-KSVPAPFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAQPQVAINXXXXXXXXXXXXXXVLVNGPSFFPFPNRVSISPSDSDEHVNNWC-DSPPRGGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSEDNERLRRSNNMLMSELAHMRKLYNDIIYFVQNHVKPVTPSN--SYPPSLL 864
            MA+M++N  G         I L ++   K+VPAPFLTKTYQLVDDP TDHVVSWG+DDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFK+GEKHLLCEIHRRKT+  Q+                 +  +G SFFP P     +P    E  + WC DSPP   +                                 LSEDNERLRRSN +LMSELAHM+KLYNDIIYFVQNHVKPV PSN  SY  S L
Sbjct:    1 MAMMVENSYGGYGGGGGERIQLMVEGQGKAVPAPFLTKTYQLVDDPATDHVVSWGDDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKRGEKHLLCEIHRRKTS--QMIPQQHSPFMSHHHAPPQIPFSGGSFFPLPPPRVTTP----EEDHYWCDDSPPSRPR-------------------VIPQQIDTAAQVTALSEDNERLRRSNTVLMSELAHMKKLYNDIIYFVQNHVKPVAPSNNSSYLSSFL 248          
BLAST of FC918258 vs. ExPASy Swiss-Prot
Match: HFB4B_ORYSJ (Heat stress transcription factor B-4b OS=Oryza sativa subsp. japonica GN=HSFB4B PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 9.791e-67
Identity = 140/282 (49.65%), Postives = 166/282 (58.87%), Query Frame = 1
Query:   85 MALMLDNCEGILLSLD----------SHKSVPAPFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAQPQVAINXXXXXXXXXXXXXXVLVNGPSFFPFPNRVSISPSDSDEHVNNWCDSPPRGGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSEDNERLRRSNNMLMSELAHMRKLYNDIIYFVQNHVKPVTPSNSYPPSLLLCNTTPSAAAAA 900
            MA +++ C  +++S++          + K VPAPFLTKTYQLVDDP TDH+VSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIV DRWEFANEFF+KG KHLL EIHRRK++QP                            P P++    P     H+N +   PP                                     LSEDN +LRR N++L+SELAHM+KLYNDIIYF+QNHV PVT + + P S  +        AAA
Sbjct:    1 MAFLVERCGEMVVSMEMGPHGGGGAAAGKPVPAPFLTKTYQLVDDPCTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADRWEFANEFFRKGAKHLLAEIHRRKSSQPPPP-------------------------PMPHQ----PYHHHHHLNPFSLPPP--PPAYHHHHLIQEEPATTAHCTVAGDGGEGGDFLAALSEDNRQLRRRNSLLLSELAHMKKLYNDIIYFLQNHVAPVTTTTTTPSSTAMAAAQHHLPAAA 251          
BLAST of FC918258 vs. ExPASy Swiss-Prot
Match: HFB4D_ORYSJ (Heat stress transcription factor B-4d OS=Oryza sativa subsp. japonica GN=HSFB4D PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 7.261e-62
Identity = 136/268 (50.75%), Postives = 163/268 (60.82%), Query Frame = 1
Query:   85 MALMLDNCEG-ILLSLD-SH----------KSVPAPFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKT---AQPQVAINXXXXXXXXXXXXXXVLVNGPSFFPFPNRVSISPSDSDEHVNNWCDSPP--RGGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSEDNERLRRSNNMLMSELAHMRKLYNDIIYFVQNHVKPVTP 837
            MA +++ C G +++S++ SH           + PAPFL+KTYQLVDDP+TD VVSWGED+ TFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIV DRWEFANEFF+KG KHLL EIHRRK+   +QPQ                  + +  P   P    V  + + +      +C SP    GG                                  LSEDN +LRR N++L+SELAHMRKLYNDIIYF+QNHV+PV P
Sbjct:    1 MAFLVERCGGEMVVSMERSHGRSTTTAAAVTAAPAPFLSKTYQLVDDPSTDDVVSWGEDEATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADRWEFANEFFRKGAKHLLSEIHRRKSSSCSQPQ------PPPPFPMHQHYPLSLFSPPTTPRSPPVGAAAAAAYHFQEEYCSSPADYAGG---------------------------GGDLLAALSEDNRQLRRRNSLLLSELAHMRKLYNDIIYFLQNHVEPVAP 235          
BLAST of FC918258 vs. ExPASy Swiss-Prot
Match: HFB4C_ORYSJ (Heat stress transcription factor B-4c OS=Oryza sativa subsp. japonica GN=HSFB4C PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 4.569e-48
Identity = 87/107 (81.31%), Postives = 97/107 (90.65%), Query Frame = 1
Query:  133 SHKSVPAPFLTKTYQLVDDPTTDHVVSWGEDD-TTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAQPQVA 450
            + K+VPAPFLTKTYQLVDDP TDH+VSWG+D  +TFVVWRPPEFARD+LPNYFKHNNFSSFVRQLNTYGFRK+VP+RWEFANEFF+KGEK LL EIHRRKT+    A
Sbjct:   17 AQKAVPAPFLTKTYQLVDDPATDHIVSWGDDRVSTFVVWRPPEFARDILPNYFKHNNFSSFVRQLNTYGFRKVVPERWEFANEFFRKGEKQLLTEIHRRKTSSASTA 123          

HSP 2 Score: 76.2554 bits (186), Expect = 2.798e-13
Identity = 35/43 (81.40%), Postives = 38/43 (88.37%), Query Frame = 1
Query:  712 LSEDNERLRRSNNMLMSELAHMRKLYNDIIYFVQNHVKPVTPS 840
            L E+NERLRRSN  L+ ELAHMRKLYNDIIYFVQNHV+PV PS
Sbjct:  212 LMEENERLRRSNTALLQELAHMRKLYNDIIYFVQNHVRPVAPS 254          
BLAST of FC918258 vs. ExPASy Swiss-Prot
Match: HFB2B_ORYSJ (Heat stress transcription factor B-2b OS=Oryza sativa subsp. japonica GN=HSFB2B PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.868e-47
Identity = 104/227 (45.81%), Postives = 122/227 (53.74%), Query Frame = 1
Query:  139 KSVPAPFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAQPQVAINXXXXXXXXXXXXXXVLVNGPSFFPFPNRVSISPSDSDEHVNNWCDSPPRGGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSEDNERLRRSNNMLMSELAHMRKLYNDIIYFVQNH 819
            ++VP PFLTKTYQLVDDP  D V+SW +D +TFVVWRP EFARDLLP YFKHNNFSSFVRQLNTYGFRKIVPDRWEFAN+ F++GE+ LLCEIHRRK   P  A                      S         IS S S E       +P   G                                  + ++NERLRR N  L  EL+ MRKL N+I+  +  +
Sbjct:   43 RTVPTPFLTKTYQLVDDPAVDDVISWNDDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANDCFRRGERRLLCEIHRRKVTPPAPAATTAAVAAAIPMALPVTTTRDGSPVLSGEEQVISSSSSPEPPLVLPQAPSGSGS--------------------------GGVASGDVGDENERLRRENAQLARELSQMRKLCNNILLLMSKY 243          
BLAST of FC918258 vs. ExPASy Swiss-Prot
Match: HFB4A_ORYSJ (Putative heat stress transcription factor B-4a OS=Oryza sativa subsp. japonica GN=HSFB4A PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.470e-46
Identity = 85/102 (83.33%), Postives = 94/102 (92.16%), Query Frame = 1
Query:  145 VPAPFLTKTYQLVDDPTTDHVVSWGEDD-----TTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTA 435
            VPAPFLTKTYQLVDDP TDHVVSW +DD     ++FVVWRPPEFARD+LPNYFKH+NFSSFVRQLNTYGFRK+VP+RWEFANEFF+KGEK LLCEIHRRK+A
Sbjct:   22 VPAPFLTKTYQLVDDPATDHVVSWEDDDGGESASSFVVWRPPEFARDILPNYFKHSNFSSFVRQLNTYGFRKVVPERWEFANEFFRKGEKQLLCEIHRRKSA 123          
BLAST of FC918258 vs. ExPASy Swiss-Prot
Match: HFB2B_ARATH (Heat stress transcription factor B-2b OS=Arabidopsis thaliana GN=HSFB2B PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.621e-45
Identity = 102/229 (44.54%), Postives = 127/229 (55.46%), Query Frame = 1
Query:  130 DSHKSVPAPFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAQPQVAINXXXXXXXXXXXXXXVLVNGPSFFPFPNRVSISPSDSDEHVNNWCDSPPRGGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSEDNERLRRSNNMLMSELAHMRKLYNDIIYFVQN 816
            DS +S+P PFLTKTYQLV+DP  D ++SW ED TTF+VWRP EFARDLLP YFKHNNFSSFVRQLNTYGFRK+VPDRWEF+N+ FK+GEK LL +I RRK +QP +A                V     +  P    + +SPS+S E      +S P                                     L E+NERLR+ N  L  E+  ++ LY +I   + N
Sbjct:   51 DSQRSIPTPFLTKTYQLVEDPVYDELISWNEDGTTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNDCFKRGEKILLRDIQRRKISQPAMAAAAAAAAAAVAASAVTV-----AAVPVVAHI-VSPSNSGEEQVISSNSSPAAA----------AAAIGGVVGGGSLQRTTSCTTAPELVEENERLRKDNERLRKEMTKLKGLYANIYTLMAN 263          
BLAST of FC918258 vs. ExPASy Swiss-Prot
Match: HFB2C_ORYSJ (Heat stress transcription factor B-2c OS=Oryza sativa subsp. japonica GN=HSFB2C PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 4.003e-44
Identity = 113/288 (39.24%), Postives = 139/288 (48.26%), Query Frame = 1
Query:  124 SLDSHKSVPAPFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAQPQVAINXXXXXXXXXXXXXXVLVNGP---SFFPFPNRVSISPSDSDEHVNNWCDSPPRGGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSEDNERLRRSNNMLMSELAHMRKLYNDII-----YFVQNHV-----------------KPVTPSNSYPPSLL----LCNTTPSAAAAA 900
            +L   +S+P PFLTKTYQLV+DP  D V+SW ED +TFVVWRP EFARDLLP YFKHNNFSSFVRQLNTYGFRKIVPDRWEFAN+ F++GEK LLC+IHRRK      A                 + +G    +  P P  + ++ + S  H +         G                                  L  +N RL R       EL HM+KL N+I+     Y    HV                 + V P    PP++L     C    +AAAAA
Sbjct:   28 ALAGQRSLPTPFLTKTYQLVEDPAVDDVISWNEDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANDCFRRGEKRLLCDIHRRKVVAAAAA--APPPPSPGMATAAAAVASGAVTVAAAPIPMALPVTRAGSPAHSSEEQVLSSNSGSGEEHRQASGSGSAPGGGGGGSASGGDMGEENERLRRENARLTR-------ELGHMKKLCNNILLLMSKYAATQHVEGSAGISSIANCSGESSEAVPPPPPLPPAILDLMPSCPALATAAAAA 306          
BLAST of FC918258 vs. ExPASy Swiss-Prot
Match: HSF24_SOLPE (Heat shock factor protein HSF24 OS=Solanum peruvianum GN=HSF24 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.288e-42
Identity = 100/231 (43.29%), Postives = 123/231 (53.25%), Query Frame = 1
Query:  133 SHKSVPAPFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAQPQVAINXXXXXXXXXXXXXXVLVNGPSFFPFPNRVSISPSDSDEHVNNWCDSPPRGGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSEDNERLRRSNNMLMSELAHMRKLYNDIIYFVQNHVK 825
            S ++ PAPFL KTYQLVDD  TD V+SW E  TTFVVW+  EFA+DLLP YFKHNNFSSFVRQLNTYGFRKIVPD+WEFANE FK+G+K LL  I RRKT     A                    G S        S SP +S + + +   S P                                     LS++NE+L++ N ML SEL   +K  N+++ F+  +VK
Sbjct:    2 SQRTAPAPFLLKTYQLVDDAATDDVISWNEIGTTFVVWKTAEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANENFKRGQKELLTAIRRRKTVTSTPA-------------------GGKS---VAAGASASPDNSGDDIGSSSTSSP------------------DSKNPGSVDTPGKLSQFTDLSDENEKLKKDNQMLSSELVQAKKQCNELVAFLSQYVK 192          
BLAST of FC918258 vs. ExPASy Swiss-Prot
Match: HSFB1_ARATH (Heat stress transcription factor B-1 OS=Arabidopsis thaliana GN=HSFB1 PE=2 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 6.391e-42
Identity = 96/231 (41.56%), Postives = 127/231 (54.98%), Query Frame = 1
Query:  133 SHKSVPAPFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAQPQVAINXXXXXXXXXXXXXXVLVNGPSFFPFPNRVSISPSDSDEHVNNWCDSPPRGGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSEDNERLRRSNNMLMSELAHMRKLYNDIIYFVQNHVK 825
            + +SVPAPFL+KTYQLVDD +TD VVSW E+ T FVVW+  EFA+DLLP YFKHNNFSSF+RQLNTYGFRK VPD+WEFAN++F++G + LL +I RRK+     A                V+V  PS          +    D+H ++   SP                                      LS +NE+L+R NN L SELA  +K  ++++ F+  H+K
Sbjct:    7 AQRSVPAPFLSKTYQLVDDHSTDDVVSWNEEGTAFVVWKTAEFAKDLLPQYFKHNNFSSFIRQLNTYGFRKTVPDKWEFANDYFRRGGEDLLTDIRRRKSVIASTA-------------GKCVVVGSPS--------ESNSGGGDDHGSSSTSSP-----------------------GSSKNPGSVENMVADLSGENEKLKRENNNLSSELAAAKKQRDELVTFLTGHLK 193          
The following BLAST results are available for this feature:
BLAST of FC918258 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
HSFB4_ARATH6.765e-7658.61Heat stress transcription factor B-4 OS=Arabidopsi... [more]
HFB4B_ORYSJ9.791e-6749.65Heat stress transcription factor B-4b OS=Oryza sat... [more]
HFB4D_ORYSJ7.261e-6250.75Heat stress transcription factor B-4d OS=Oryza sat... [more]
HFB4C_ORYSJ4.569e-4881.31Heat stress transcription factor B-4c OS=Oryza sat... [more]
HFB2B_ORYSJ3.868e-4745.81Heat stress transcription factor B-2b OS=Oryza sat... [more]
HFB4A_ORYSJ1.470e-4683.33Putative heat stress transcription factor B-4a OS=... [more]
HFB2B_ARATH3.621e-4544.54Heat stress transcription factor B-2b OS=Arabidops... [more]
HFB2C_ORYSJ4.003e-4439.24Heat stress transcription factor B-2c OS=Oryza sat... [more]
HSF24_SOLPE1.288e-4243.29Heat shock factor protein HSF24 OS=Solanum peruvia... [more]
HSFB1_ARATH6.391e-4241.56Heat stress transcription factor B-1 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA74DD11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA74DD11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918258 ID=FC918258; Name=FC918258; organism=Citrus clementina; type=EST; length=910bp
CCCCCCTCTCCCGACTCTCTCTCACTTGCTCCCAAACAAAAAAATTTTTC
TTGTTGCTTTGTTTTTGCTTTCACCCTTCTTTCAATGGCGCTTATGTTAG
ACAATTGCGAAGGCATCTTGCTATCACTAGACTCACACAAATCAGTACCG
GCGCCATTCCTCACAAAAACTTACCAGCTGGTTGATGATCCCACCACAGA
CCATGTAGTTTCCTGGGGCGAAGACGACACCACCTTCGTCGTTTGGCGTC
CCCCTGAGTTCGCACGTGATCTTCTTCCCAACTACTTCAAGCACAACAAC
TTTTCTAGTTTTGTCAGACAGCTCAACACCTATGGTTTTAGAAAGATTGT
GCCGGACAGATGGGAGTTTGCTAATGAGTTCTTCAAGAAAGGAGAGAAGC
ACTTGCTGTGTGAGATCCACAGAAGAAAGACTGCACAGCCACAAGTTGCC
ATAAACCATCATCACCATCATCATCAGCACCCACATTCGCATTCTCCCGT
ACTGGTCAACGGTCCAAGTTTCTTCCCATTTCCGAACCGAGTCAGCATCT
CTCCATCCGACTCAGACGAACACGTTAACAACTGGTGTGACTCGCCGCCA
AGAGGAGGCAAAGGCACGGGAGTTTCTGCTGTCATGAGTAGTGGTGCTGG
CTGCGGCGGCGGGTACAACAATAACAATAATAATATTAATCTTAATACCT
CGGTTACTGCCTTGTCGGAAGATAATGAGAGACTGAGGAGAAGCAACAAT
ATGCTTATGTCGGAACTTGCACACATGAGAAAGCTTTACAATGATATCAT
ATATTTTGTGCAAAATCATGTGAAGCCAGTTACTCCTAGCAATTCTTACC
CCCCTTCTTTGCTTCTTTGTAACACAACACCAAGTGCTGCTGCTGCTGCT
CCTATGTGTG
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