FC918261

Overview
NameFC918261
Unique NameFC918261
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length863
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8555 contig Ccv1_Contig8555:19..881. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC918261 vs. ExPASy Swiss-Prot
Match: KPRO_MAIZE (Putative receptor protein kinase ZmPK1 OS=Zea mays GN=PK1 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 7.444e-13
Identity = 71/277 (25.63%), Postives = 113/277 (40.79%), Query Frame = 2
Query:  128 ISLGSTLFASNYLNQSWPSPNSTFSLTFVQKTPTSYIPAITYSGGVPVWTAGKTAVDSSG----------SFQLHPSGTLRLVNGTGAIIWDSSTGSLN-VSSACLDDSGNFKLLKNDSVSAWSSFDNPTDAILPSQNFTYGKILRSGYYSFTLLRPGNLTLRWND----SVVY-----------------YNEGFKSNLTSPILSLQPNGILSIFDETLXXXXXXXXXXXXXEGSDVLRFLRLDSDGNLRIYSSARGTGTVTKRWAAIPDXCQVYG 862
            + LGS+L   +Y + +  S + TFS  F +    ++  ++ YS         KT V S+           +  L   G + L +  GA +W +   +   V  A L D+GN  +  +   + W SFD+PTD  LP+Q  T    L     S +   PGN   R++D    S++Y                 Y +G     ++ +  L  +G+L+  D                 G  V R L LD DGNLR+YS     G+ +    A+   C ++G
Sbjct:   32 LPLGSSLVVESYESSTLQSSDGTFSSGFYEVYTHAFTFSVWYSKTEAAAANNKTIVWSANPDRPVHARRSALTLQKDGNMVLTDYDGAAVWRADGNNFTGVQRARLLDTGNLVIEDSGGNTVWQSFDSPTDTFLPTQLITAATRLVPTTQSRS---PGNYIFRFSDLSVLSLIYHVPQVSDIYWPDPDQNLYQDGRNQYNSTRLGMLTDSGVLASSD-----FADGQALVASDVGPGVKRRLTLDPDGNLRLYSMNDSDGSWSVSMVAMTQPCNIHG 300          
The following BLAST results are available for this feature:
BLAST of FC918261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
KPRO_MAIZE7.444e-1325.63Putative receptor protein kinase ZmPK1 OS=Zea mays... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA62BH10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA62BH10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918261 ID=FC918261; Name=FC918261; organism=Citrus clementina; type=EST; length=863bp
CTGATTAAATGTCCCAGACATTAAACCATAAACACTACACAGACCAAAAA
TGACACTCACATTTTCAGCTTTAGCTATAACACTACTATTCTCACTAAGC
TTTCATTTTAGCTTTTCATTTGCAAACATAAGCTTAGGCTCCACTCTTTT
CGCTTCAAATTACTTGAACCAATCTTGGCCTTCACCAAACAGCACATTTT
CTCTCACATTCGTTCAAAAAACACCAACTTCTTACATTCCCGCTATCACT
TATTCCGGCGGAGTTCCCGTCTGGACCGCCGGAAAAACCGCCGTTGACTC
ATCTGGGTCCTTTCAGCTTCACCCCTCCGGCACTCTCCGCCTCGTCAATG
GCACCGGTGCCATCATCTGGGACTCTTCAACCGGAAGTCTTAATGTCTCC
TCTGCTTGTCTTGATGACTCTGGCAACTTCAAACTCCTCAAAAACGATAG
CGTTTCCGCTTGGTCCTCGTTTGATAATCCCACCGATGCCATCCTTCCTT
CACAGAATTTCACTTATGGAAAGATTTTGCGATCTGGGTATTATTCATTT
ACTCTCCTTAGACCAGGGAATTTAACTTTGAGGTGGAATGATAGCGTTGT
TTATTATAATGAAGGCTTCAAATCAAATTTGACTTCACCGATTTTAAGTT
TGCAGCCAAATGGAATTTTGTCAATATTTGATGAGACATTATCTAGTGCT
GCTATTATTGCTTATAGTAGTGATTATGCTGAGGGTAGTGATGTATTGAG
GTTCTTGAGATTAGATAGTGATGGTAATTTGAGGATCTATAGTTCTGCTA
GAGGTACTGGGACTGTGACCAAAAGATGGGCAGCTATTCCTGACCNATGT
CAGGTCTATGGTT
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