FC918262
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC918262 vs. ExPASy Swiss-Prot
Match: SF3A2_RAT (Splicing factor 3A subunit 2 OS=Rattus norvegicus GN=Sf3a2 PE=2 SV=1) HSP 1 Score: 273.092 bits (697), Expect = 1.340e-72 Identity = 127/177 (71.75%), Postives = 153/177 (86.44%), Query Frame = 3 Query: 132 TIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPAQPQPHKRKVNVRKTVKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFK 662 TID+ KDPYFM+NHLGSYECKLCLTLHNNEG+YLAHTQGK+HQTNLA+RAA+EAK+APAQP P K KV V+K VKIGRPGY+VTKQ D E Q+SLLFQI+YPEI + PRHRFMS++EQR++P D+R+QYL+ AAEPYE IAFKVPS EIDK+ KF++HW+ ++K F LQ +FK Sbjct: 37 TIDINKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVTKQRDTEMGQQSLLFQIDYPEIAEGVMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIAFKVPSREIDKAEGKFWTHWNRETKQFFLQFHFK 213
BLAST of FC918262 vs. ExPASy Swiss-Prot
Match: SF3A2_HUMAN (Splicing factor 3A subunit 2 OS=Homo sapiens GN=SF3A2 PE=1 SV=2) HSP 1 Score: 273.092 bits (697), Expect = 1.340e-72 Identity = 127/177 (71.75%), Postives = 153/177 (86.44%), Query Frame = 3 Query: 132 TIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPAQPQPHKRKVNVRKTVKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFK 662 TID+ KDPYFM+NHLGSYECKLCLTLHNNEG+YLAHTQGK+HQTNLA+RAA+EAK+APAQP P K KV V+K VKIGRPGY+VTKQ D E Q+SLLFQI+YPEI + PRHRFMS++EQR++P D+R+QYL+ AAEPYE IAFKVPS EIDK+ KF++HW+ ++K F LQ +FK Sbjct: 37 TIDINKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVTKQRDSEMGQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIAFKVPSREIDKAEGKFWTHWNRETKQFFLQFHFK 213
BLAST of FC918262 vs. ExPASy Swiss-Prot
Match: SF3A2_BOVIN (Splicing factor 3A subunit 2 OS=Bos taurus GN=SF3A2 PE=2 SV=1) HSP 1 Score: 273.092 bits (697), Expect = 1.340e-72 Identity = 127/177 (71.75%), Postives = 153/177 (86.44%), Query Frame = 3 Query: 132 TIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPAQPQPHKRKVNVRKTVKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFK 662 TID+ KDPYFM+NHLGSYECKLCLTLHNNEG+YLAHTQGK+HQTNLA+RAA+EAK+APAQP P K KV V+K VKIGRPGY+VTKQ D E Q+SLLFQI+YPEI + PRHRFMS++EQR++P D+R+QYL+ AAEPYE IAFKVPS EIDK+ KF++HW+ ++K F LQ +FK Sbjct: 37 TIDINKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVTKQRDTEMGQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIAFKVPSREIDKAEGKFWTHWNRETKQFFLQFHFK 213
BLAST of FC918262 vs. ExPASy Swiss-Prot
Match: SF3A2_MOUSE (Splicing factor 3A subunit 2 OS=Mus musculus GN=Sf3a2 PE=2 SV=2) HSP 1 Score: 253.062 bits (645), Expect = 1.435e-66 Identity = 119/160 (74.38%), Postives = 140/160 (87.50%), Query Frame = 3 Query: 132 TIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPAQPQPHKRKVNVRKTVKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFF 611 TID+ KDPYFM+NHLGSYECKLCLTLHNNEG+YLAHTQGK+HQTNLA+RAA+EAK+APAQP P + KV V+K VKIGRPGY+VTKQ D E Q+SLLFQI+YPEI + PRHRFMS++EQR++P D+R+QYL+ AAEPYE IAFKVPS EIDK+ KFF Sbjct: 37 TIDINKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEQVKVEVKKFVKIGRPGYKVTKQRDTEMGQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIAFKVPSREIDKAEGKFF 196
BLAST of FC918262 vs. ExPASy Swiss-Prot
Match: SF3A2_DICDI (Splicing factor 3A subunit 2 OS=Dictyostelium discoideum GN=sf3a2 PE=3 SV=1) HSP 1 Score: 229.565 bits (584), Expect = 1.699e-59 Identity = 111/182 (60.99%), Postives = 146/182 (80.22%), Query Frame = 3 Query: 135 IDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPAQPQPH---KRKVNVRKTVKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKST---PKFFSHWDPDSKMFTLQLYFK 662 +D++KDPY + NH+GS+EC+LCLT+HNN GNYLAHTQGK+HQT+LA+RAA+E ++ P+ + + +V +KT+KIGRPGY++ KQ D +T Q SLLFQI+YPEIE +PRHR MS+FEQRV+ +K YQYL+FAAEPYE IAFK+P+ EID++T KFF+HWD +K FTLQLYFK Sbjct: 34 VDVSKDPYIISNHIGSFECRLCLTVHNNVGNYLAHTQGKKHQTHLARRAAKEQRENPSVSKNNYIQTTRVIHKKTIKIGRPGYKIIKQRDSKTGQLSLLFQIDYPEIESGLQPRHRIMSAFEQRVEQPNKDYQYLLFAAEPYETIAFKIPNKEIDRTTGPDGKFFTHWD-RNKTFTLQLYFK 214
BLAST of FC918262 vs. ExPASy Swiss-Prot
Match: SAP62_SCHPO (CWF complex protein sap62 OS=Schizosaccharomyces pombe GN=sap62 PE=1 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 8.187e-46 Identity = 96/182 (52.75%), Postives = 133/182 (73.08%), Query Frame = 3 Query: 132 TIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPAQ-PQP----HKRKVNVRKTV-KIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYF 659 TIDL+KDPY M+NHLG++EC+LCLT H NE +YL HTQGK+HQTNLA+R A E K + PQ + V V+K+V KIGRPGY+V+K + E+ + L FQI+YP+IE +KPR+R MS++EQRV+ D+++QYL+ AAEPYE IAFK ID++ KF+S+W D+ +T+Q ++ Sbjct: 37 TIDLSKDPYLMKNHLGTFECRLCLTTHANENSYLTHTQGKKHQTNLARRQALENKKSQENAPQVLLGISQSHVQVKKSVVKIGRPGYKVSKIREAESGKFGLRFQIKYPDIEVNAKPRYRIMSAYEQRVEAPDRKFQYLVVAAEPYESIAFK-----IDRAPGKFWSYW--DAPTYTIQFFY 211 The following BLAST results are available for this feature:
BLAST of FC918262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC918262 ID=FC918262; Name=FC918262; organism=Citrus clementina; type=EST; length=829bpback to top |