FC918262

Overview
NameFC918262
Unique NameFC918262
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length829
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC918262_ssr235 microsatellite FC918262_ssr235:235..244. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13629 contig Ccv1_Contig13629:128..956. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC918262 vs. ExPASy Swiss-Prot
Match: SF3A2_RAT (Splicing factor 3A subunit 2 OS=Rattus norvegicus GN=Sf3a2 PE=2 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 1.340e-72
Identity = 127/177 (71.75%), Postives = 153/177 (86.44%), Query Frame = 3
Query:  132 TIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPAQPQPHKRKVNVRKTVKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFK 662
            TID+ KDPYFM+NHLGSYECKLCLTLHNNEG+YLAHTQGK+HQTNLA+RAA+EAK+APAQP P K KV V+K VKIGRPGY+VTKQ D E  Q+SLLFQI+YPEI +   PRHRFMS++EQR++P D+R+QYL+ AAEPYE IAFKVPS EIDK+  KF++HW+ ++K F LQ +FK
Sbjct:   37 TIDINKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVTKQRDTEMGQQSLLFQIDYPEIAEGVMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIAFKVPSREIDKAEGKFWTHWNRETKQFFLQFHFK 213          
BLAST of FC918262 vs. ExPASy Swiss-Prot
Match: SF3A2_HUMAN (Splicing factor 3A subunit 2 OS=Homo sapiens GN=SF3A2 PE=1 SV=2)

HSP 1 Score: 273.092 bits (697), Expect = 1.340e-72
Identity = 127/177 (71.75%), Postives = 153/177 (86.44%), Query Frame = 3
Query:  132 TIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPAQPQPHKRKVNVRKTVKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFK 662
            TID+ KDPYFM+NHLGSYECKLCLTLHNNEG+YLAHTQGK+HQTNLA+RAA+EAK+APAQP P K KV V+K VKIGRPGY+VTKQ D E  Q+SLLFQI+YPEI +   PRHRFMS++EQR++P D+R+QYL+ AAEPYE IAFKVPS EIDK+  KF++HW+ ++K F LQ +FK
Sbjct:   37 TIDINKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVTKQRDSEMGQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIAFKVPSREIDKAEGKFWTHWNRETKQFFLQFHFK 213          
BLAST of FC918262 vs. ExPASy Swiss-Prot
Match: SF3A2_BOVIN (Splicing factor 3A subunit 2 OS=Bos taurus GN=SF3A2 PE=2 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 1.340e-72
Identity = 127/177 (71.75%), Postives = 153/177 (86.44%), Query Frame = 3
Query:  132 TIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPAQPQPHKRKVNVRKTVKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFK 662
            TID+ KDPYFM+NHLGSYECKLCLTLHNNEG+YLAHTQGK+HQTNLA+RAA+EAK+APAQP P K KV V+K VKIGRPGY+VTKQ D E  Q+SLLFQI+YPEI +   PRHRFMS++EQR++P D+R+QYL+ AAEPYE IAFKVPS EIDK+  KF++HW+ ++K F LQ +FK
Sbjct:   37 TIDINKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVTKQRDTEMGQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIAFKVPSREIDKAEGKFWTHWNRETKQFFLQFHFK 213          
BLAST of FC918262 vs. ExPASy Swiss-Prot
Match: SF3A2_MOUSE (Splicing factor 3A subunit 2 OS=Mus musculus GN=Sf3a2 PE=2 SV=2)

HSP 1 Score: 253.062 bits (645), Expect = 1.435e-66
Identity = 119/160 (74.38%), Postives = 140/160 (87.50%), Query Frame = 3
Query:  132 TIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPAQPQPHKRKVNVRKTVKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFF 611
            TID+ KDPYFM+NHLGSYECKLCLTLHNNEG+YLAHTQGK+HQTNLA+RAA+EAK+APAQP P + KV V+K VKIGRPGY+VTKQ D E  Q+SLLFQI+YPEI +   PRHRFMS++EQR++P D+R+QYL+ AAEPYE IAFKVPS EIDK+  KFF
Sbjct:   37 TIDINKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEQVKVEVKKFVKIGRPGYKVTKQRDTEMGQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIAFKVPSREIDKAEGKFF 196          
BLAST of FC918262 vs. ExPASy Swiss-Prot
Match: SF3A2_DICDI (Splicing factor 3A subunit 2 OS=Dictyostelium discoideum GN=sf3a2 PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.699e-59
Identity = 111/182 (60.99%), Postives = 146/182 (80.22%), Query Frame = 3
Query:  135 IDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPAQPQPH---KRKVNVRKTVKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKST---PKFFSHWDPDSKMFTLQLYFK 662
            +D++KDPY + NH+GS+EC+LCLT+HNN GNYLAHTQGK+HQT+LA+RAA+E ++ P+  + +     +V  +KT+KIGRPGY++ KQ D +T Q SLLFQI+YPEIE   +PRHR MS+FEQRV+  +K YQYL+FAAEPYE IAFK+P+ EID++T    KFF+HWD  +K FTLQLYFK
Sbjct:   34 VDVSKDPYIISNHIGSFECRLCLTVHNNVGNYLAHTQGKKHQTHLARRAAKEQRENPSVSKNNYIQTTRVIHKKTIKIGRPGYKIIKQRDSKTGQLSLLFQIDYPEIESGLQPRHRIMSAFEQRVEQPNKDYQYLLFAAEPYETIAFKIPNKEIDRTTGPDGKFFTHWD-RNKTFTLQLYFK 214          
BLAST of FC918262 vs. ExPASy Swiss-Prot
Match: SAP62_SCHPO (CWF complex protein sap62 OS=Schizosaccharomyces pombe GN=sap62 PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 8.187e-46
Identity = 96/182 (52.75%), Postives = 133/182 (73.08%), Query Frame = 3
Query:  132 TIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPAQ-PQP----HKRKVNVRKTV-KIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYF 659
            TIDL+KDPY M+NHLG++EC+LCLT H NE +YL HTQGK+HQTNLA+R A E K +    PQ      +  V V+K+V KIGRPGY+V+K  + E+ +  L FQI+YP+IE  +KPR+R MS++EQRV+  D+++QYL+ AAEPYE IAFK     ID++  KF+S+W  D+  +T+Q ++
Sbjct:   37 TIDLSKDPYLMKNHLGTFECRLCLTTHANENSYLTHTQGKKHQTNLARRQALENKKSQENAPQVLLGISQSHVQVKKSVVKIGRPGYKVSKIREAESGKFGLRFQIKYPDIEVNAKPRYRIMSAYEQRVEAPDRKFQYLVVAAEPYESIAFK-----IDRAPGKFWSYW--DAPTYTIQFFY 211          
The following BLAST results are available for this feature:
BLAST of FC918262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
SF3A2_RAT1.340e-7271.75Splicing factor 3A subunit 2 OS=Rattus norvegicus ... [more]
SF3A2_HUMAN1.340e-7271.75Splicing factor 3A subunit 2 OS=Homo sapiens GN=SF... [more]
SF3A2_BOVIN1.340e-7271.75Splicing factor 3A subunit 2 OS=Bos taurus GN=SF3A... [more]
SF3A2_MOUSE1.435e-6674.38Splicing factor 3A subunit 2 OS=Mus musculus GN=Sf... [more]
SF3A2_DICDI1.699e-5960.99Splicing factor 3A subunit 2 OS=Dictyostelium disc... [more]
SAP62_SCHPO8.187e-4652.75CWF complex protein sap62 OS=Schizosaccharomyces p... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA17AH11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA17AH11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918262 ID=FC918262; Name=FC918262; organism=Citrus clementina; type=EST; length=829bp
AAGCTTTGAACACATACCTCATCAAAATCATGGACAGAGAGTGGGGTTCG
AAGCCCGGCAGCGGTGGCGCCGCCTCCGCTCAGAATGAGGCCATCGACCG
GCGAGAGAGGCTCCGGAGGTTGGCCTTGGAGACCATCGATTTAGCCAAAG
ATCCTTATTTCATGCGGAACCACCTGGGCAGTTACGAGTGTAAGCTGTGT
TTGACACTTCACAATAACGAGGGAAACTACTTGGCACACACACAAGGGAA
GCGCCATCAGACCAATTTGGCTAAGAGAGCTGCCCGCGAGGCCAAGGATG
CTCCTGCTCAGCCCCAGCCCCACAAGCGAAAAGTCAACGTTCGTAAAACA
GTCAAAATTGGTAGGCCTGGGTATCGTGTGACAAAACAGTTTGATCCTGA
GACAAAGCAGAGGTCTCTTCTATTCCAGATTGAATATCCTGAGATAGAAG
ACCTATCAAAGCCGAGGCACCGATTTATGTCATCTTTTGAGCAGCGAGTT
CAACCATTTGATAAGAGATACCAGTATCTTATGTTTGCAGCAGAACCATA
TGAGATCATTGCTTTTAAGGTTCCCAGCACAGAGATTGACAAATCTACAC
CCAAGTTCTTTTCCCATTGGGATCCAGACTCAAAGATGTTCACGCTGCAG
CTATATTTCAAATCCAAACCAGTGGAGGGGAACAAACCTCAAGCTGCCCC
TGCAGCCAACGGTGCAGTAGCTCCACCACCGCCACCTCCACCACAGGGGC
CACCACCAGGTGTGTCTGCAGGATATGCTCCTAGAGCCCCACCCCCGCCA
ATGACTGGGACATTACCGCCTCCCCCACC
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