FC918263

Overview
NameFC918263
Unique NameFC918263
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length866
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6568 contig Ccv1_Contig6568:10..875. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC918263 vs. ExPASy Swiss-Prot
Match: PSMD4_ARATH (26S proteasome non-ATPase regulatory subunit 4 OS=Arabidopsis thaliana GN=MBP1 PE=1 SV=1)

HSP 1 Score: 346.665 bits (888), Expect = 1.021e-94
Identity = 175/236 (74.15%), Postives = 198/236 (83.90%), Query Frame = 3
Query:   81 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDD-GKPEKLEALLAAVNNNDSSHLVHVPTGPNALSDVLISSPVFTXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNIDPELALALRVSM 785
            MVLEATMICIDNSEWMRNGDYSPSRL+AQ +AV+L+CGAKTQSNPENTVGILTM GKGVRVLTTPT+DLGKILACMH LD+GGE+N+ A IQ+AQLALKHRQNKNQRQRIIVFAGSP+KY++K +E++GK+LKKNSV++DIVNFGEDDD  KP+KLEALL AVNNND SH+VHVP+G NALSDVL+S+PVFT                           VDPNIDPELALALRVSM
Sbjct:    1 MVLEATMICIDNSEWMRNGDYSPSRLQAQTEAVNLLCGAKTQSNPENTVGILTMAGKGVRVLTTPTSDLGKILACMHGLDVGGEINLTAAIQIAQLALKHRQNKNQRQRIIVFAGSPIKYEKKALEIVGKRLKKNSVSLDIVNFGEDDDEEKPQKLEALLTAVNNNDGSHIVHVPSGANALSDVLLSTPVFT--GDEGASGYVSAAAAAAAAGGDFDFGVDPNIDPELALALRVSM 234          
BLAST of FC918263 vs. ExPASy Swiss-Prot
Match: PSMD4_DICDI (26S proteasome non-ATPase regulatory subunit 4 OS=Dictyostelium discoideum GN=psmD4 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 5.476e-56
Identity = 111/235 (47.23%), Postives = 156/235 (66.38%), Query Frame = 3
Query:   81 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTGPNALSDVLISSPVFTXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNIDPELALALRVSM 785
            M LEAT++C+DNSEWMRNGD++PSR  AQ DAV+LIC +KTQSNPE+ V I++M GK   VL T T +L KIL+   EL I G+++ +  +Q+AQLAL+HRQN +Q  RII F GSP+K  ++ +  + K+LKKN VA+DI+NFGE  +   +KLEA +  VNNND SHL+ VP GP+ LSD+++ SP+                             ++ + DP+LA+AL++S+
Sbjct:    1 MTLEATIVCLDNSEWMRNGDFTPSRSEAQKDAVNLICASKTQSNPESAVSIMSMAGKKPEVLVTLTQELSKILSGAQELKINGKIDFSTTMQIAQLALRHRQNNHQHPRIIAFVGSPLKETKEELIQLAKRLKKNGVAVDIINFGEVTENS-DKLEAFINDVNNNDESHLLTVPPGPHILSDIILQSPI-----------------VESGSGQFGSEFINADTDPDLAMALKLSL 217          
BLAST of FC918263 vs. ExPASy Swiss-Prot
Match: PSMD4_MOUSE (26S proteasome non-ATPase regulatory subunit 4 OS=Mus musculus GN=Psmd4 PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.649e-52
Identity = 115/237 (48.52%), Postives = 153/237 (64.56%), Query Frame = 3
Query:   81 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNND--SSHLVHVPTGPNALSDVLISSPVFTXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNIDPELALALRVSM 785
            MVLE+TM+C+DNSE+MRNGD+ P+RL+AQ DAV+++C +KT+SNPEN VG++T+      VLTT T D G+IL+ +H +   G++    GI+VA LALKHRQ KN + RII F GSPV+ + K +  + K+LKK  V +DI+NFGE ++   EKL A +  +N  D   SHLV VP GP +L+D LISSP+                             VDP+ DPELALALRVSM
Sbjct:    1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CEVLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP-SLADALISSPILA----------GEGGAMLGLGASDFEFGVDPSADPELALALRVSM 224          
BLAST of FC918263 vs. ExPASy Swiss-Prot
Match: PSMD4_HUMAN (26S proteasome non-ATPase regulatory subunit 4 OS=Homo sapiens GN=PSMD4 PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.649e-52
Identity = 115/237 (48.52%), Postives = 153/237 (64.56%), Query Frame = 3
Query:   81 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNND--SSHLVHVPTGPNALSDVLISSPVFTXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNIDPELALALRVSM 785
            MVLE+TM+C+DNSE+MRNGD+ P+RL+AQ DAV+++C +KT+SNPEN VG++T+      VLTT T D G+IL+ +H +   G++    GI+VA LALKHRQ KN + RII F GSPV+ + K +  + K+LKK  V +DI+NFGE ++   EKL A +  +N  D   SHLV VP GP +L+D LISSP+                             VDP+ DPELALALRVSM
Sbjct:    1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CEVLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP-SLADALISSPILA----------GEGGAMLGLGASDFEFGVDPSADPELALALRVSM 224          
BLAST of FC918263 vs. ExPASy Swiss-Prot
Match: PSMD4_BOVIN (26S proteasome non-ATPase regulatory subunit 4 OS=Bos taurus GN=PSMD4 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.649e-52
Identity = 115/237 (48.52%), Postives = 153/237 (64.56%), Query Frame = 3
Query:   81 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNND--SSHLVHVPTGPNALSDVLISSPVFTXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNIDPELALALRVSM 785
            MVLE+TM+C+DNSE+MRNGD+ P+RL+AQ DAV+++C +KT+SNPEN VG++T+      VLTT T D G+IL+ +H +   G++    GI+VA LALKHRQ KN + RII F GSPV+ + K +  + K+LKK  V +DI+NFGE ++   EKL A +  +N  D   SHLV VP GP +L+D LISSP+                             VDP+ DPELALALRVSM
Sbjct:    1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CEVLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP-SLADALISSPILA----------GEGGAMLGLGASDFEFGVDPSADPELALALRVSM 224          
BLAST of FC918263 vs. ExPASy Swiss-Prot
Match: RPN10_SCHPO (26S proteasome regulatory subunit rpn10 OS=Schizosaccharomyces pombe GN=rpn10 PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.182e-50
Identity = 109/235 (46.38%), Postives = 141/235 (60.00%), Query Frame = 3
Query:   81 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTGPNALSDVLISSPVFTXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNIDPELALALRVSM 785
            MVLEATMI IDNSEWM NGDY P+R  AQ D V +I   K   NPEN  G++T+G    +VL+T T D GK L+ MH+L + G      GIQ+AQLALKHR+NK QRQRI+ F GSP+  D K +  + K++KKN+VAIDI++ GE  +     L+  + A N++DS HLV +P  P  LSD++  SP+                             VDPN+D ELALAL +SM
Sbjct:    1 MVLEATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTLTRDYGKFLSAMHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVEDEKNLIRLAKRMKKNNVAIDIIHIGELQN--ESALQHFIDAANSSDSCHLVSIPPSPQLLSDLVNQSPI---------------GQGVVASQNQFEYGVDPNLDVELALALELSM 218          
BLAST of FC918263 vs. ExPASy Swiss-Prot
Match: RPN10_YEAST (26S proteasome regulatory subunit RPN10 OS=Saccharomyces cerevisiae GN=RPN10 PE=1 SV=3)

HSP 1 Score: 196.438 bits (498), Expect = 1.706e-49
Identity = 108/237 (45.57%), Postives = 147/237 (62.03%), Query Frame = 3
Query:   81 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNN--NDSSHLVHVPTGPNALSDVLISSPVFTXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNIDPELALALRVSM 785
            MVLEAT++ IDNSE+ RNGD+  +R  AQ D+V  I  AK  SNPENTVG+++  G   RVL+T T + GKILA +H+  I G++++A  +Q+AQL LKHRQNK Q QRI+ F  SP+   R  +  + K LKKN+VA+DI+NFGE +    E L+  +AAVNN   ++SHL+ V  GP  L + + SSP+                             VDP++DPELA+ALR+SM
Sbjct:    1 MVLEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLSTFTAEFGKILAGLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISDSRDELIRLAKTLKKNNVAVDIINFGEIEQ-NTELLDEFIAAVNNPQEETSHLLTVTPGPRLLYENIASSPIILEEGSSGMGAFGGSGGDSDANGTFMDFGVDPSMDPELAMALRLSM 236          
BLAST of FC918263 vs. ExPASy Swiss-Prot
Match: PSMD4_DROME (26S proteasome non-ATPase regulatory subunit 4 OS=Drosophila melanogaster GN=Pros54 PE=1 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 7.169e-48
Identity = 110/237 (46.41%), Postives = 143/237 (60.34%), Query Frame = 3
Query:   81 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNND--SSHLVHVPTGPNALSDVLISSPVFTXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNIDPELALALRVSM 785
            MVLE+TMIC DNS++ RNGDY P+RL  Q D ++L+C  K +SNPEN VG++T+    V VL T T+D G+I + MH +   GE+N+  GI++A L LKHRQ KN + RI+VF GSP+ ++   +    K+LKK  V +DIV+FG D     E L A + A+N  D   SHLV VP G + LSD L+SSP+                             VDPN DPELALALRVSM
Sbjct:    1 MVLESTMICFDNSDFQRNGDYFPTRLIVQRDGINLVCLTKLRSNPENNVGLMTLSNT-VEVLATLTSDAGRIFSKMHLVQPKGEINLLTGIRIAHLVLKHRQGKNHKMRIVVFVGSPINHEEGDLVKQAKRLKKEKVNVDIVSFG-DHGNNNEILTAFINALNGKDGTGSHLVSVPRG-SVLSDALLSSPII---------QGEDGMGGAGLGGNVFEFGVDPNEDPELALALRVSM 225          
BLAST of FC918263 vs. ExPASy Swiss-Prot
Match: PIPSL_HUMAN (Putative PIP5K1A and PSMD4-like protein OS=Homo sapiens GN=PIPSL PE=5 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.184e-42
Identity = 103/235 (43.83%), Postives = 138/235 (58.72%), Query Frame = 3
Query:   87 LEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNND--SSHLVHVPTGPNALSDVLISSPVFTXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNIDPELALALRVSM 785
            L+     +DNSE+M NGD+ P+RL+AQ DAV+ +C +KT+SNPEN VG++T+      VLTT T D G+IL+ +H +   G++    GI VA LALKHRQ  N + RII F G+PV+ + K +  + K LKK  V +DI+NFGE ++   EKL A +  +N  D   SHLV VP GP +L+D LIS P+                             VDP+ DPELAL LRV M
Sbjct:  488 LQMLTTSVDNSEYMGNGDFLPTRLQAQQDAVNTVCHSKTRSNPENNVGLITLDND-CEVLTTLTPDTGRILSKLHTVQPKGKITFCMGIHVAHLALKHRQGNNHKIRIIAFVGNPVEDNEKNLVKLAKCLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP-SLADALISFPILA----------GEGGAMMGLGASDFEFGVDPSADPELALVLRVFM 709          
BLAST of FC918263 vs. ExPASy Swiss-Prot
Match: PSMD4_SCHMA (26S proteasome non-ATPase regulatory subunit 4 OS=Schistosoma mansoni PE=2 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 4.658e-39
Identity = 95/237 (40.08%), Postives = 137/237 (57.81%), Query Frame = 3
Query:   81 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNND--SSHLVHVPTGPNALSDVLISSPVFTXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNIDPELALALRVSM 785
            M  EAT+I +DNS++MRNGD+ P+RL+AQ DAV LIC +K Q NPENT+G+L++      VL T T D+ KI   +H ++  G +   + I++A LAL+HRQ ++Q+ RI+ F GSP+  D K +  + K+LKK  V +DI+NFGE++  + +KL   +  +N  D   SHL+ V  G   L D L++SPV                             +D   DP+L  ALRVSM
Sbjct:    1 MSQEATIIAVDNSDYMRNGDFFPTRLQAQNDAVGLICQSKRQRNPENTIGLLSLAN--TEVLCTLTNDVSKIYNRLHLVEPKGRIIFCSSIRIAHLALRHRQLRHQKMRIVCFIGSPILEDEKELTRLAKRLKKEKVNVDIINFGENETNE-QKLSEFIDTLNGKDGTGSHLISVAPG-TVLHDTLMTSPVVA----------GEDGSGMAGAGLGLEFGLDGAEDPDLLYALRVSM 223          
The following BLAST results are available for this feature:
BLAST of FC918263 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
PSMD4_ARATH1.021e-9474.1526S proteasome non-ATPase regulatory subunit 4 OS=... [more]
PSMD4_DICDI5.476e-5647.2326S proteasome non-ATPase regulatory subunit 4 OS=... [more]
PSMD4_MOUSE1.649e-5248.5226S proteasome non-ATPase regulatory subunit 4 OS=... [more]
PSMD4_HUMAN1.649e-5248.5226S proteasome non-ATPase regulatory subunit 4 OS=... [more]
PSMD4_BOVIN1.649e-5248.5226S proteasome non-ATPase regulatory subunit 4 OS=... [more]
RPN10_SCHPO1.182e-5046.3826S proteasome regulatory subunit rpn10 OS=Schizos... [more]
RPN10_YEAST1.706e-4945.5726S proteasome regulatory subunit RPN10 OS=Sacchar... [more]
PSMD4_DROME7.169e-4846.4126S proteasome non-ATPase regulatory subunit 4 OS=... [more]
PIPSL_HUMAN1.184e-4243.83Putative PIP5K1A and PSMD4-like protein OS=Homo sa... [more]
PSMD4_SCHMA4.658e-3940.0826S proteasome non-ATPase regulatory subunit 4 OS=... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA96BA09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA96BA09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918263 ID=FC918263; Name=FC918263; organism=Citrus clementina; type=EST; length=866bp
CCCAAACTGAACATCAAAAATCGATTCAAAGCTCGTCTGCATACTCTCGT
CTTCTCGTACTAAAAAATTCAATCAAAGCCATGGTTCTCGAGGCGACTAT
GATATGCATTGACAATTCGGAATGGATGCGAAACGGCGATTACTCTCCGT
CACGATTACGAGCTCAAGCCGACGCCGTTAGTCTTATTTGTGGAGCCAAA
ACACAATCGAACCCGGAGAATACCGTGGGGATATTGACGATGGGTGGCAA
AGGGGTTCGTGTTTTGACTACTCCTACAACTGATCTTGGGAAAATTTTAG
CTTGCATGCATGAACTTGATATTGGGGGTGAGATGAACATAGCGGCTGGA
ATCCAGGTTGCACAGTTGGCTCTTAAGCATCGGCAGAACAAAAACCAGCG
TCAAAGGATTATAGTTTTTGCTGGAAGTCCTGTTAAGTATGATAGGAAGG
TAATGGAGATGATTGGGAAGAAATTGAAGAAGAACAGTGTGGCTATTGAT
ATTGTTAATTTTGGTGAAGATGATGATGGGAAGCCAGAGAAATTGGAAGC
ACTTCTTGCTGCAGTTAATAACAATGATAGTAGTCATCTAGTTCATGTTC
CTACTGGTCCAAATGCTCTTTCTGATGTACTTATAAGCTCACCTGTATTC
ACTGCTGATGGTGAAGGAGGAAGTGGCTTTGCTGCAGCAGCAGCGGCAGC
TGCAGCTGGTGGAGTTTCTGACTTCGATTTTGGTGTGGACCCCAACATTG
ACCCTGAACTGGCTCTTGCCCTTAGGGTTTCCATGGAAGAGGAGAGAGCA
AGGCAAGAAGCTGCTGCCAAAAGGGCTGCTGATGAAGCTTCCAGACAAGG
GAAAGAGGAGGAGCCA
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